Wall clock time and date at job start Tue Mar 31 2020 05:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46950 * 2 1 4 4 C 1.52994 * 109.47042 * 239.99349 * 2 1 3 5 5 C 1.50703 * 109.47199 * 65.00644 * 4 2 1 6 6 O 1.21290 * 119.99438 * 359.97438 * 5 4 2 7 7 N 1.34773 * 120.00392 * 180.02562 * 5 4 2 8 8 C 1.46502 * 119.99563 * 359.97438 * 7 5 4 9 9 C 1.46494 * 120.00261 * 179.97438 * 7 5 4 10 10 H 1.09004 * 109.47210 * 359.97438 * 9 7 5 11 11 C 1.53000 * 109.47140 * 239.99821 * 9 7 5 12 12 C 1.50700 * 109.47451 * 119.99488 * 9 7 5 13 13 H 1.08002 * 119.99619 * 5.45711 * 12 9 7 14 14 C 1.37871 * 120.00414 * 185.45421 * 12 9 7 15 15 N 1.31519 * 119.99903 * 9.62089 * 14 12 9 16 16 Si 1.86798 * 120.00424 * 189.62095 * 14 12 9 17 17 H 1.48499 * 109.47270 * 84.99600 * 16 14 12 18 18 H 1.48502 * 109.47373 * 204.99619 * 16 14 12 19 19 H 1.48509 * 109.46981 * 324.99277 * 16 14 12 20 20 C 1.53008 * 109.46749 * 119.99589 * 2 1 3 21 21 H 1.09003 * 109.49915 * 60.07776 * 20 2 1 22 22 C 1.53117 * 109.50040 * 299.99987 * 20 2 1 23 23 C 1.53121 * 109.15489 * 182.40610 * 22 20 2 24 24 C 1.53038 * 109.28083 * 57.65596 * 23 22 20 25 25 N 1.46840 * 109.51964 * 300.81688 * 24 23 22 26 26 C 1.46849 * 111.19638 * 61.74557 * 25 24 23 27 27 H 1.09003 * 109.46878 * 60.00448 * 1 2 3 28 28 H 1.09000 * 109.46950 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47166 * 300.00463 * 1 2 3 30 30 H 1.09006 * 109.46853 * 184.99931 * 4 2 1 31 31 H 1.09000 * 109.47607 * 305.00068 * 4 2 1 32 32 H 1.08999 * 109.46812 * 90.00651 * 8 7 5 33 33 H 1.09001 * 109.47115 * 209.99733 * 8 7 5 34 34 H 1.08991 * 109.47308 * 330.00535 * 8 7 5 35 35 H 1.09005 * 109.46662 * 303.28363 * 11 9 7 36 36 H 1.08990 * 109.47330 * 63.28259 * 11 9 7 37 37 H 1.09002 * 109.47119 * 183.28693 * 11 9 7 38 38 H 0.97000 * 120.00546 * 180.02562 * 15 14 12 39 39 H 1.08995 * 109.52591 * 302.30770 * 22 20 2 40 40 H 1.08998 * 109.52255 * 62.50534 * 22 20 2 41 41 H 1.09005 * 109.50476 * 177.59945 * 23 22 20 42 42 H 1.09004 * 109.50391 * 297.67279 * 23 22 20 43 43 H 1.08996 * 109.45900 * 60.83806 * 24 23 22 44 44 H 1.08997 * 109.46142 * 180.80616 * 24 23 22 45 45 H 1.00893 * 111.00404 * 297.64273 * 25 24 23 46 46 H 1.09004 * 109.46471 * 178.23756 * 26 25 24 47 47 H 1.08998 * 109.46871 * 58.27062 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.6415 0.0569 -2.4766 6 8 1.0111 1.0869 -2.3633 7 7 1.9845 -0.3921 -3.7001 8 6 2.7455 -1.6366 -3.8368 9 6 1.5966 0.3641 -4.8933 10 1 1.0408 1.2531 -4.5952 11 6 0.7164 -0.5110 -5.7879 12 6 2.8325 0.7747 -5.6517 13 1 3.8032 0.4260 -5.3315 14 6 2.7239 1.5952 -6.7543 15 7 1.5756 2.1721 -7.0342 16 14 4.2077 1.8877 -7.8507 17 1 4.3071 0.7948 -8.8512 18 1 4.0567 3.1881 -8.5517 19 1 5.4391 1.9128 -7.0209 20 6 2.0400 -0.7212 1.2494 21 1 1.6780 -1.7494 1.2492 22 6 1.5299 0.0002 2.4999 23 6 2.0936 -0.6918 3.7442 24 6 3.6224 -0.6888 3.6752 25 7 4.0601 -1.3910 2.4621 26 6 3.5703 -0.7173 1.2527 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 3.1264 -0.7996 -1.2054 31 1 1.6054 -1.7199 -1.2950 32 1 2.0560 -2.4765 -3.9221 33 1 3.3680 -1.5855 -4.7301 34 1 3.3784 -1.7736 -2.9601 35 1 1.2507 -1.4275 -6.0383 36 1 -0.2042 -0.7597 -5.2602 37 1 0.4759 0.0308 -6.7026 38 1 1.4991 2.7491 -7.8101 39 1 1.8586 1.0392 2.4807 40 1 0.4409 -0.0380 2.5238 41 1 1.7685 -0.1571 4.6367 42 1 1.7325 -1.7195 3.7840 43 1 3.9827 0.3396 3.6497 44 1 4.0265 -1.1935 4.5527 45 1 3.7715 -2.3576 2.4797 46 1 3.9367 -1.2426 0.3706 47 1 3.9309 0.3112 1.2384 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157066677.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:16 Heat of formation + Delta-G solvation = -59.688620 kcal Electronic energy + Delta-G solvation = -23388.851013 eV Core-core repulsion = 20184.428605 eV Total energy + Delta-G solvation = -3204.422408 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.82470 -38.70359 -35.66191 -34.64394 -32.80510 -31.78081 -30.11004 -29.27785 -27.39164 -26.00400 -25.16872 -24.02107 -23.13504 -21.54370 -20.53988 -19.70675 -18.14099 -16.70839 -16.37025 -15.85909 -15.57776 -15.08727 -14.93213 -14.65634 -14.28639 -13.83739 -13.60876 -13.42907 -12.96072 -12.59871 -12.41616 -12.40534 -12.29201 -11.87963 -11.79305 -11.70090 -11.47832 -11.40823 -11.15366 -10.98920 -10.88140 -10.84705 -10.70351 -10.64772 -10.44982 -10.28716 -10.17771 -10.15946 -9.20419 -8.75921 -8.45762 -8.38058 -7.54159 -6.07344 -4.12052 3.27661 3.34414 3.36075 3.48003 3.98686 4.14984 4.41288 4.56316 4.65944 4.78478 4.86256 5.09685 5.12615 5.22848 5.24727 5.37389 5.39801 5.48382 5.55802 5.65549 5.70116 5.79097 5.80485 5.84980 5.86613 5.93973 5.97621 6.02784 6.08317 6.18229 6.27760 6.37217 6.55596 6.68395 6.70896 6.77907 6.84814 7.01492 7.19723 7.38688 7.58330 7.72954 7.95701 8.20151 8.58920 8.88056 9.14280 9.53193 11.00013 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027117 B = 0.003656 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.332278 B = 7657.279831 C = 8026.562160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.065 4.065 3 H 0.078 0.922 4 C -0.138 4.138 5 C 0.503 3.497 6 O -0.550 6.550 7 N -0.595 5.595 8 C 0.084 3.916 9 C 0.255 3.745 10 H 0.069 0.931 11 C -0.140 4.140 12 C -0.529 4.529 13 H 0.059 0.941 14 C 0.067 3.933 15 N -0.884 5.884 16 Si 0.894 3.106 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.275 1.275 20 C -0.117 4.117 21 H 0.067 0.933 22 C -0.116 4.116 23 C -0.158 4.158 24 C 0.055 3.945 25 N -0.687 5.687 26 C 0.056 3.944 27 H 0.079 0.921 28 H 0.042 0.958 29 H 0.049 0.951 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.041 0.959 33 H 0.079 0.921 34 H 0.053 0.947 35 H 0.031 0.969 36 H 0.015 0.985 37 H 0.075 0.925 38 H 0.263 0.737 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.338 0.662 46 H 0.079 0.921 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.493 -9.391 17.488 19.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.084 4.084 3 H 0.096 0.904 4 C -0.178 4.178 5 C 0.290 3.710 6 O -0.429 6.429 7 N -0.327 5.327 8 C -0.060 4.060 9 C 0.155 3.845 10 H 0.087 0.913 11 C -0.199 4.199 12 C -0.568 4.568 13 H 0.077 0.923 14 C -0.136 4.136 15 N -0.522 5.522 16 Si 0.722 3.278 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.200 1.200 20 C -0.138 4.138 21 H 0.086 0.914 22 C -0.153 4.153 23 C -0.197 4.197 24 C -0.074 4.074 25 N -0.314 5.314 26 C -0.073 4.073 27 H 0.098 0.902 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.050 0.950 36 H 0.034 0.966 37 H 0.093 0.907 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.155 0.845 46 H 0.097 0.903 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.718 -8.410 17.367 19.372 hybrid contribution -0.164 -0.215 -0.748 0.796 sum 1.554 -8.625 16.618 18.788 Atomic orbital electron populations 1.21974 0.94903 1.00974 1.03052 1.20818 0.96428 0.99692 0.91471 0.90373 1.21831 1.02274 0.99963 0.93703 1.20425 0.80152 0.85807 0.84621 1.90611 1.41171 1.24885 1.86246 1.48230 1.53189 1.23962 1.07271 1.21585 0.95647 0.86362 1.02454 1.18910 0.94932 0.90771 0.79874 0.91281 1.22009 0.96986 0.99218 1.01646 1.21282 0.92965 1.30646 1.11877 0.92262 1.24902 0.96105 0.94842 0.97772 1.69975 1.24731 1.30013 1.27467 0.86583 0.82976 0.77531 0.80756 1.20503 1.21212 1.19961 1.21928 0.97097 0.99728 0.95010 0.91440 1.21653 1.00647 0.99561 0.93460 1.22276 0.97839 1.00948 0.98620 1.22023 0.92696 0.99882 0.92834 1.60685 1.62587 1.06068 1.02057 1.22209 0.92177 1.00330 0.92594 0.90185 0.93871 0.93219 0.89389 0.89919 0.94090 0.90277 0.92801 0.95022 0.96637 0.90668 0.92700 0.91772 0.91550 0.91682 0.92214 0.90976 0.91076 0.84475 0.90299 0.90765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 8.58 37.16 0.32 -1.80 16 2 C -0.06 -0.86 1.62 -90.62 -0.15 -1.01 16 3 H 0.08 1.20 7.96 -51.93 -0.41 0.79 16 4 C -0.14 -1.96 3.51 -27.88 -0.10 -2.06 16 5 C 0.50 10.17 7.39 -10.99 -0.08 10.09 16 6 O -0.55 -13.24 13.29 5.55 0.07 -13.16 16 7 N -0.60 -12.60 2.75 -175.26 -0.48 -13.08 16 8 C 0.08 1.38 9.16 59.85 0.55 1.93 16 9 C 0.26 6.54 2.50 -69.09 -0.17 6.36 16 10 H 0.07 2.08 6.84 -51.93 -0.36 1.72 16 11 C -0.14 -3.32 9.12 37.16 0.34 -2.98 16 12 C -0.53 -14.35 8.01 -34.44 -0.28 -14.63 16 13 H 0.06 1.58 7.16 -52.49 -0.38 1.20 16 14 C 0.07 1.84 5.17 -17.82 -0.09 1.75 16 15 N -0.88 -25.51 12.16 55.43 0.67 -24.84 16 16 Si 0.89 21.07 29.55 -169.99 -5.02 16.05 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 20 C -0.12 -1.21 1.92 -90.54 -0.17 -1.38 16 21 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 22 C -0.12 -1.12 4.86 -26.61 -0.13 -1.25 16 23 C -0.16 -1.27 6.08 -26.65 -0.16 -1.43 16 24 C 0.06 0.46 6.55 -3.84 -0.03 0.44 16 25 N -0.69 -6.40 6.87 -113.82 -0.78 -7.18 16 26 C 0.06 0.58 5.47 -3.83 -0.02 0.55 16 27 H 0.08 1.40 5.95 -51.93 -0.31 1.09 16 28 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.62 6.49 -51.93 -0.34 0.28 16 30 H 0.09 1.13 5.46 -51.93 -0.28 0.85 16 31 H 0.08 1.04 8.11 -51.93 -0.42 0.62 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 1.39 6.92 -51.93 -0.36 1.03 16 34 H 0.05 0.72 6.44 -51.93 -0.33 0.39 16 35 H 0.03 0.68 7.56 -51.93 -0.39 0.28 16 36 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 1.94 6.84 -51.93 -0.36 1.58 16 38 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.65 6.57 -51.93 -0.34 0.31 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.34 2.74 8.86 -39.30 -0.35 2.39 16 46 H 0.08 0.80 6.37 -51.93 -0.33 0.47 16 47 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 353.16 15.07 5.32 5.32 Total: -1.00 -30.59 353.16 -8.71 -39.30 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -8.32 Total: 3.00 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -0.17 Total: -5.41 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: -0.59 Total: -45.09 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.07 Total: -13.16 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.59 -8.71 -39.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157066677.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.391 kcal (2) G-P(sol) polarization free energy of solvation -30.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds