Wall clock time and date at job start Tue Mar 31 2020 05:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47388 * 2 1 4 4 C 1.50700 * 109.47348 * 239.99664 * 2 1 3 5 5 O 1.21284 * 120.00033 * 270.54255 * 4 2 1 6 6 N 1.34771 * 119.99816 * 90.26032 * 4 2 1 7 7 C 1.46503 * 120.00118 * 355.13041 * 6 4 2 8 8 C 1.46503 * 119.99868 * 175.12720 * 6 4 2 9 9 C 1.50702 * 109.46715 * 90.00325 * 8 6 4 10 10 H 1.07996 * 120.00426 * 0.02562 * 9 8 6 11 11 C 1.37878 * 119.99802 * 179.97438 * 9 8 6 12 12 N 1.31513 * 120.00083 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00182 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47121 * 59.99698 * 13 11 9 15 15 H 1.48496 * 109.47207 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.46902 * 299.99973 * 13 11 9 17 17 N 1.46911 * 109.47000 * 119.99697 * 2 1 3 18 18 C 1.46772 * 110.99726 * 173.57400 * 17 2 1 19 19 C 1.52859 * 110.07343 * 168.47607 * 18 17 2 20 20 C 1.53237 * 109.38289 * 77.03680 * 19 18 17 21 21 C 1.53091 * 108.81995 * 285.44007 * 20 19 18 22 22 C 1.52891 * 109.34260 * 316.36087 * 21 20 19 23 23 C 1.52827 * 109.60445 * 112.57375 * 22 21 20 24 24 C 1.46979 * 111.00173 * 297.78265 * 17 2 1 25 25 H 1.08996 * 109.46942 * 185.31396 * 1 2 3 26 26 H 1.09003 * 109.46621 * 305.30948 * 1 2 3 27 27 H 1.08999 * 109.46866 * 65.30873 * 1 2 3 28 28 H 1.08999 * 109.46888 * 94.59044 * 7 6 4 29 29 H 1.08997 * 109.46869 * 214.59307 * 7 6 4 30 30 H 1.08992 * 109.47025 * 334.59274 * 7 6 4 31 31 H 1.09003 * 109.47325 * 209.99897 * 8 6 4 32 32 H 1.08991 * 109.47110 * 330.00403 * 8 6 4 33 33 H 0.97006 * 120.00464 * 180.02562 * 12 11 9 34 34 H 1.09004 * 109.37313 * 288.65967 * 18 17 2 35 35 H 1.08997 * 109.37092 * 48.29448 * 18 17 2 36 36 H 1.09003 * 109.48623 * 317.06988 * 19 18 17 37 37 H 1.08999 * 109.48966 * 197.01363 * 19 18 17 38 38 H 1.09004 * 109.57506 * 165.64283 * 20 19 18 39 39 H 1.08999 * 109.68406 * 45.30896 * 20 19 18 40 40 H 1.08997 * 109.49261 * 196.39522 * 21 20 19 41 41 H 1.08998 * 109.50979 * 76.32782 * 21 20 19 42 42 H 1.09000 * 109.44576 * 352.53660 * 22 21 20 43 43 H 1.08994 * 109.42093 * 232.60500 * 22 21 20 44 44 H 1.09002 * 109.49104 * 164.00082 * 23 22 21 45 45 H 1.09006 * 109.50986 * 43.94471 * 23 22 21 46 46 H 1.08996 * 109.49552 * 242.57085 * 24 17 2 47 47 H 1.09005 * 109.49468 * 2.65685 * 24 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.2252 -1.9076 -1.2032 6 7 2.2620 -0.0165 -2.3627 7 6 1.9230 1.4071 -2.4308 8 6 2.8507 -0.6858 -3.5253 9 6 1.7524 -1.2471 -4.3911 10 1 0.7193 -1.1180 -4.1043 11 6 2.0665 -1.9248 -5.5501 12 7 3.3246 -2.0817 -5.8997 13 14 0.7051 -2.6201 -6.6237 14 1 -0.1769 -1.5165 -7.0812 15 1 1.3018 -3.2986 -7.8022 16 1 -0.0918 -3.5985 -5.8408 17 7 2.0197 -0.6925 1.1996 18 6 3.4788 -0.8463 1.1593 19 6 3.9961 -1.3028 2.5233 20 6 3.7125 -2.7982 2.7003 21 6 2.2192 -2.9882 2.9789 22 6 1.7540 -1.9357 3.9856 23 6 0.7941 -0.9621 3.3028 24 6 1.5922 0.0040 2.4212 25 1 -0.3633 -1.0232 0.0952 26 1 -0.3633 0.5940 0.8387 27 1 -0.3633 0.4293 -0.9337 28 1 2.8035 2.0022 -2.1885 29 1 1.5846 1.6522 -3.4375 30 1 1.1289 1.6260 -1.7171 31 1 3.4355 0.0322 -4.1004 32 1 3.4981 -1.4955 -3.1892 33 1 3.5456 -2.5582 -6.7152 34 1 3.7435 -1.5879 0.4056 35 1 3.9359 0.1087 0.9004 36 1 3.4916 -0.7416 3.3099 37 1 5.0702 -1.1268 2.5824 38 1 4.2925 -3.1831 3.5391 39 1 3.9856 -3.3338 1.7911 40 1 2.0495 -3.9837 3.3889 41 1 1.6587 -2.8765 2.0508 42 1 2.6176 -1.3886 4.3638 43 1 1.2442 -2.4270 4.8142 44 1 0.2490 -0.3979 4.0596 45 1 0.0886 -1.5188 2.6859 46 1 2.4690 0.3539 2.9661 47 1 0.9657 0.8551 2.1544 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159436407.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:53 Heat of formation + Delta-G solvation = -22.765389 kcal Electronic energy + Delta-G solvation = -24215.117588 eV Core-core repulsion = 21012.296292 eV Total energy + Delta-G solvation = -3202.821296 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.03151 -38.33702 -35.15594 -34.66964 -32.86760 -32.59049 -30.96793 -27.80667 -27.35578 -26.15296 -25.71346 -23.84000 -22.32056 -22.04240 -20.73131 -19.02361 -18.34734 -16.65615 -16.49259 -16.25779 -15.44098 -14.99159 -14.75543 -14.33859 -14.13319 -14.00082 -13.65817 -13.38784 -13.19642 -12.88053 -12.39612 -12.22462 -12.06217 -11.96848 -11.78468 -11.55603 -11.43424 -11.24579 -11.14083 -11.01097 -10.85070 -10.81395 -10.69245 -10.54088 -10.41659 -10.13223 -10.11921 -9.91799 -9.59891 -8.71951 -8.40396 -7.95954 -7.58006 -6.01198 -4.05567 3.33915 3.38377 3.40269 3.45283 3.75758 4.23250 4.47793 4.81252 4.92071 4.98970 5.09337 5.16842 5.21119 5.30174 5.33331 5.35217 5.39544 5.49088 5.56305 5.64188 5.66562 5.82216 5.85737 5.88131 5.92302 5.94496 6.00287 6.01278 6.08482 6.20192 6.24653 6.27666 6.40197 6.41688 6.49325 6.53550 6.83692 7.03567 7.24835 7.31374 7.46138 7.59033 7.95367 8.26859 8.47393 8.94339 9.17945 9.59448 11.06838 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023435 B = 0.004481 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.497424 B = 6246.531669 C = 6472.799529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.064 3.936 3 H 0.052 0.948 4 C 0.509 3.491 5 O -0.519 6.519 6 N -0.606 5.606 7 C 0.082 3.918 8 C 0.248 3.752 9 C -0.523 4.523 10 H 0.056 0.944 11 C 0.061 3.939 12 N -0.896 5.896 13 Si 0.897 3.103 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.276 1.276 17 N -0.508 5.508 18 C 0.050 3.950 19 C -0.136 4.136 20 C -0.110 4.110 21 C -0.121 4.121 22 C -0.121 4.121 23 C -0.111 4.111 24 C 0.043 3.957 25 H 0.072 0.928 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.041 0.959 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.030 0.970 32 H 0.041 0.959 33 H 0.263 0.737 34 H 0.092 0.908 35 H 0.023 0.977 36 H 0.082 0.918 37 H 0.059 0.941 38 H 0.049 0.951 39 H 0.064 0.936 40 H 0.046 0.954 41 H 0.092 0.908 42 H 0.064 0.936 43 H 0.050 0.950 44 H 0.055 0.945 45 H 0.072 0.928 46 H 0.060 0.940 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.435 7.065 18.296 19.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.047 4.047 3 H 0.070 0.930 4 C 0.294 3.706 5 O -0.394 6.394 6 N -0.339 5.339 7 C -0.062 4.062 8 C 0.129 3.871 9 C -0.562 4.562 10 H 0.074 0.926 11 C -0.141 4.141 12 N -0.536 5.536 13 Si 0.725 3.275 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.202 1.202 17 N -0.233 5.233 18 C -0.077 4.077 19 C -0.173 4.173 20 C -0.147 4.147 21 C -0.158 4.158 22 C -0.158 4.158 23 C -0.149 4.149 24 C -0.085 4.085 25 H 0.091 0.909 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.060 0.940 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.041 0.959 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.064 0.936 41 H 0.110 0.890 42 H 0.082 0.918 43 H 0.068 0.932 44 H 0.073 0.927 45 H 0.091 0.909 46 H 0.078 0.922 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.393 5.870 18.133 19.209 hybrid contribution -0.311 0.554 -0.818 1.035 sum -2.704 6.424 17.315 18.665 Atomic orbital electron populations 1.21773 0.92501 1.03519 1.01698 1.21782 0.97129 0.95485 0.90340 0.93036 1.20095 0.78940 0.87735 0.83851 1.90665 1.50823 1.14093 1.83850 1.48185 1.61983 1.09424 1.14327 1.21659 0.99067 0.82668 1.02822 1.19236 0.93856 0.92864 0.81128 1.21385 0.93204 1.35436 1.06183 0.92559 1.24928 0.95604 0.95899 0.97653 1.69922 1.16701 1.42203 1.24733 0.86570 0.81957 0.79302 0.79659 1.20298 1.21203 1.20166 1.61858 1.11830 1.49576 1.00061 1.22291 0.86643 1.00126 0.98628 1.22152 1.00114 0.97596 0.97468 1.21564 0.96646 0.95523 1.00975 1.21666 0.96490 0.96948 1.00732 1.21704 0.98883 0.97451 0.97761 1.21702 0.97901 0.97534 0.97732 1.22437 0.98973 0.95519 0.91527 0.90933 0.92147 0.91746 0.94021 0.90882 0.92359 0.95175 0.94090 0.92717 0.88969 0.95896 0.89981 0.92230 0.93264 0.91685 0.93553 0.88994 0.91788 0.93170 0.92665 0.90924 0.92210 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 8.73 37.16 0.32 -1.55 16 2 C 0.06 1.00 1.39 -68.86 -0.10 0.90 16 3 H 0.05 0.72 6.76 -51.93 -0.35 0.37 16 4 C 0.51 10.64 5.85 -10.99 -0.06 10.58 16 5 O -0.52 -13.14 14.86 5.55 0.08 -13.05 16 6 N -0.61 -12.99 2.86 -182.96 -0.52 -13.52 16 7 C 0.08 1.33 9.88 59.85 0.59 1.92 16 8 C 0.25 6.57 5.14 -5.19 -0.03 6.54 16 9 C -0.52 -15.01 9.39 -34.44 -0.32 -15.33 16 10 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 11 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 12 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 13 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 17 N -0.51 -7.29 2.61 -228.02 -0.60 -7.89 16 18 C 0.05 0.75 4.51 -3.97 -0.02 0.73 16 19 C -0.14 -1.63 5.32 -26.68 -0.14 -1.78 16 20 C -0.11 -1.37 5.77 -26.56 -0.15 -1.53 16 21 C -0.12 -1.52 5.50 -26.74 -0.15 -1.67 16 22 C -0.12 -1.25 5.46 -26.88 -0.15 -1.40 16 23 C -0.11 -1.14 5.69 -26.71 -0.15 -1.29 16 24 C 0.04 0.48 4.74 -3.67 -0.02 0.46 16 25 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.06 0.65 6.64 -51.93 -0.34 0.31 16 27 H 0.06 0.88 7.21 -51.93 -0.37 0.51 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 1.21 8.11 -51.93 -0.42 0.79 16 30 H 0.06 0.78 5.37 -51.93 -0.28 0.50 16 31 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 32 H 0.04 1.22 7.50 -51.93 -0.39 0.83 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.09 1.72 6.08 -51.93 -0.32 1.40 16 35 H 0.02 0.33 8.05 -51.93 -0.42 -0.08 16 36 H 0.08 0.88 2.86 -51.93 -0.15 0.73 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.94 7.84 -51.93 -0.41 0.53 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.09 1.42 6.33 -51.93 -0.33 1.09 16 42 H 0.06 0.63 5.42 -51.93 -0.28 0.35 16 43 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.86 7.79 -51.93 -0.40 0.45 16 46 H 0.06 0.62 5.46 -51.93 -0.28 0.33 16 47 H 0.06 0.58 6.16 -51.93 -0.32 0.26 16 LS Contribution 346.06 15.07 5.22 5.22 Total: -1.00 -32.15 346.06 -8.56 -40.71 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -7.99 Total: -0.66 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -0.47 Total: -1.75 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: -0.38 Total: -47.57 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: 0.08 Total: -13.05 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.15 -8.56 -40.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159436407.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.943 kcal (2) G-P(sol) polarization free energy of solvation -32.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds