Wall clock time and date at job start Tue Mar 31 2020 05:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47316 * 2 1 4 4 C 1.50706 * 109.46738 * 120.00006 * 2 1 3 5 5 O 1.21281 * 119.99825 * 119.99936 * 4 2 1 6 6 N 1.34775 * 119.99997 * 299.99414 * 4 2 1 7 7 C 1.46499 * 120.00263 * 180.02562 * 6 4 2 8 8 C 1.52992 * 109.47384 * 180.02562 * 7 6 4 9 9 C 1.53002 * 109.47204 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.47274 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00219 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00128 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99767 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00053 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47310 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47229 * 119.99810 * 14 12 10 17 17 H 1.48505 * 109.47114 * 239.99557 * 14 12 10 18 18 N 1.46895 * 109.46957 * 239.99533 * 2 1 3 19 19 C 1.48000 * 111.00234 * 301.28230 * 18 2 1 20 20 C 1.50453 * 112.83234 * 84.83471 * 19 18 2 21 21 C 1.54317 * 108.49865 * 93.72501 * 20 19 18 22 22 C 1.45877 * 112.18165 * 281.47771 * 21 20 19 23 23 C 1.54306 * 112.18956 * 61.12157 * 22 21 20 24 24 C 1.48000 * 110.99989 * 70.00646 * 18 2 1 25 25 H 1.09004 * 109.46960 * 59.99929 * 1 2 3 26 26 H 1.09000 * 109.47888 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47308 * 300.00696 * 1 2 3 28 28 H 0.96998 * 119.99954 * 0.02562 * 6 4 2 29 29 H 1.08998 * 109.46967 * 300.00497 * 7 6 4 30 30 H 1.09008 * 109.46798 * 59.99698 * 7 6 4 31 31 H 1.08998 * 109.47296 * 300.00077 * 8 7 6 32 32 H 1.08998 * 109.47619 * 59.99983 * 8 7 6 33 33 H 1.08998 * 109.46889 * 300.00120 * 9 8 7 34 34 H 1.08997 * 109.47408 * 59.99775 * 9 8 7 35 35 H 0.97007 * 119.99578 * 180.02562 * 13 12 10 36 36 H 1.08998 * 108.81430 * 323.96911 * 19 18 2 37 37 H 1.08999 * 108.81144 * 205.69436 * 19 18 2 38 38 H 1.08993 * 109.63220 * 334.02265 * 20 19 18 39 39 H 1.08995 * 109.62716 * 213.43013 * 20 19 18 40 40 H 1.08995 * 108.93877 * 42.17954 * 21 20 19 41 41 H 1.09002 * 108.93541 * 160.78444 * 21 20 19 42 42 H 1.08995 * 108.93574 * 181.81957 * 22 21 20 43 43 H 1.09002 * 108.93979 * 300.42475 * 22 21 20 44 44 H 1.08998 * 109.63527 * 41.15468 * 23 22 21 45 45 H 1.08999 * 109.63253 * 161.74901 * 23 22 21 46 46 H 1.08998 * 108.81455 * 70.47691 * 24 18 2 47 47 H 1.09006 * 108.71901 * 312.14188 * 24 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 1.2305 5 8 2.7295 -1.6966 1.1193 6 7 1.7067 -0.2499 2.4546 7 6 2.1954 -0.9402 3.6508 8 6 1.6848 -0.2193 4.9000 9 6 2.1957 -0.9398 6.1493 10 6 1.6924 -0.2302 7.3797 11 1 1.0706 0.6473 7.2806 12 6 2.0264 -0.7005 8.6320 13 7 2.7840 -1.7687 8.7527 14 14 1.4030 0.1797 10.1571 15 1 0.5769 1.3455 9.7530 16 1 0.5795 -0.7546 10.9660 17 1 2.5577 0.6480 10.9651 18 7 2.0196 -0.6926 -1.1993 19 6 1.5200 -2.0848 -1.2490 20 6 0.1494 -2.1918 -1.8603 21 6 0.3068 -2.4896 -3.3663 22 6 0.6430 -1.2943 -4.1319 23 6 1.9834 -0.6740 -3.6852 24 6 1.7510 0.1030 -2.4181 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3635 -1.0276 0.0005 27 1 -0.3634 0.5140 0.8900 28 1 1.1488 0.5386 2.5436 29 1 1.8324 -1.9679 3.6510 30 1 3.2854 -0.9399 3.6506 31 1 2.0475 0.8086 4.9000 32 1 0.5948 -0.2200 4.9000 33 1 1.8335 -1.9679 6.1494 34 1 3.2857 -0.9388 6.1492 35 1 3.0187 -2.0998 9.6338 36 1 1.4843 -2.4819 -0.2346 37 1 2.2142 -2.6866 -1.8355 38 1 -0.3854 -1.2515 -1.7270 39 1 -0.4024 -3.0012 -1.3825 40 1 1.0962 -3.2292 -3.4999 41 1 -0.6288 -2.9009 -3.7452 42 1 0.7094 -1.5575 -5.1875 43 1 -0.1489 -0.5566 -4.0021 44 1 2.7101 -1.4653 -3.5015 45 1 2.3544 -0.0053 -4.4619 46 1 2.4016 0.9775 -2.4175 47 1 0.7137 0.4373 -2.3960 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172128362.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:06 Heat of formation + Delta-G solvation = -47.640590 kcal Electronic energy + Delta-G solvation = -22772.053640 eV Core-core repulsion = 19568.153674 eV Total energy + Delta-G solvation = -3203.899966 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.58311 -38.73385 -35.53828 -34.96509 -33.33806 -32.42687 -31.50189 -30.22024 -27.02666 -26.71634 -25.17568 -23.95043 -22.51672 -20.81257 -20.67037 -20.09070 -19.37812 -17.16080 -16.65956 -16.22261 -15.78206 -15.55179 -15.25133 -14.75290 -14.46593 -14.22394 -13.99197 -13.78338 -13.52346 -13.26555 -12.88985 -12.68075 -12.32441 -12.21680 -12.09114 -11.97197 -11.82353 -11.70505 -11.33796 -10.92736 -10.89464 -10.82132 -10.72494 -10.64992 -10.56347 -10.36387 -9.86312 -9.68855 -9.28147 -9.09106 -8.70750 -8.37887 -8.25973 -6.02271 -4.05295 2.83788 3.20708 3.29518 3.37096 3.40579 3.83603 4.38546 4.43911 4.47538 4.66682 4.76476 4.83527 4.90906 4.94601 5.01307 5.17913 5.22801 5.32350 5.33610 5.40128 5.49787 5.55935 5.67558 5.72600 5.74259 5.77773 5.79315 5.83264 5.86540 5.91543 6.01007 6.09098 6.17469 6.26175 6.52609 6.60759 6.83063 6.91760 7.01301 7.05960 7.63662 7.76168 7.77129 7.96750 8.37418 8.47401 9.01695 9.58961 11.09067 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.046595 B = 0.002568 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.778201 B =10902.822911 C =10981.787521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.067 3.933 3 H 0.104 0.896 4 C 0.513 3.487 5 O -0.525 6.525 6 N -0.727 5.727 7 C 0.118 3.882 8 C -0.120 4.120 9 C 0.023 3.977 10 C -0.521 4.521 11 H 0.056 0.944 12 C 0.056 3.944 13 N -0.894 5.894 14 Si 0.893 3.107 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 N -0.527 5.527 19 C 0.055 3.945 20 C -0.162 4.162 21 C -0.119 4.119 22 C -0.119 4.119 23 C -0.121 4.121 24 C 0.062 3.938 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.396 0.604 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.261 0.739 36 H 0.089 0.911 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.055 0.945 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.070 0.930 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.201 3.833 -25.710 26.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.045 4.045 3 H 0.122 0.878 4 C 0.298 3.702 5 O -0.401 6.401 6 N -0.379 5.379 7 C -0.005 4.005 8 C -0.158 4.158 9 C -0.014 4.014 10 C -0.560 4.560 11 H 0.074 0.926 12 C -0.145 4.145 13 N -0.533 5.533 14 Si 0.721 3.279 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.210 1.210 18 N -0.251 5.251 19 C -0.072 4.072 20 C -0.201 4.201 21 C -0.156 4.156 22 C -0.156 4.156 23 C -0.159 4.159 24 C -0.065 4.065 25 H 0.085 0.915 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.230 0.770 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.070 0.930 36 H 0.107 0.893 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.095 0.905 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.105 2.950 -25.634 26.303 hybrid contribution -1.451 0.897 0.929 1.943 sum -6.557 3.847 -24.704 25.847 Atomic orbital electron populations 1.22670 0.95750 1.03540 1.02803 1.21571 0.93912 0.98918 0.90108 0.87816 1.20358 0.80616 0.84918 0.84334 1.90672 1.37074 1.25986 1.86406 1.46213 1.53501 1.32128 1.06015 1.21619 0.99264 0.96429 0.83168 1.21878 1.00103 0.99512 0.94330 1.19033 0.96684 0.95680 0.90033 1.21240 1.31462 1.12352 0.90922 0.92615 1.25037 0.95184 0.95081 0.99225 1.69979 1.36766 1.23056 1.23464 0.86528 0.78637 0.79653 0.83121 1.19773 1.21002 1.20993 1.61661 1.60757 1.02065 1.00586 1.22009 0.93322 0.88786 1.03070 1.22357 0.99337 1.02591 0.95822 1.20571 1.01426 0.98215 0.95436 1.20593 0.97372 0.98026 0.99656 1.21419 0.97752 1.00464 0.96236 1.21816 0.99533 0.96205 0.88966 0.91473 0.90926 0.91473 0.77000 0.91906 0.91787 0.92756 0.92808 0.96305 0.96262 0.92977 0.89327 0.90987 0.90682 0.91514 0.92017 0.92584 0.92271 0.92464 0.90459 0.91144 0.91175 0.94524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.63 7.40 37.16 0.27 -1.36 16 2 C 0.07 0.72 2.73 -68.87 -0.19 0.54 16 3 H 0.10 0.97 8.08 -51.93 -0.42 0.55 16 4 C 0.51 7.48 6.62 -10.98 -0.07 7.41 16 5 O -0.53 -9.75 14.20 5.56 0.08 -9.67 16 6 N -0.73 -10.22 5.45 -60.29 -0.33 -10.55 16 7 C 0.12 2.07 5.67 -4.05 -0.02 2.05 16 8 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 11 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 12 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 13 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 14 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 15 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 N -0.53 -5.89 4.47 -229.30 -1.03 -6.92 16 19 C 0.06 0.63 4.16 -4.49 -0.02 0.61 16 20 C -0.16 -1.46 4.35 -27.31 -0.12 -1.58 16 21 C -0.12 -0.92 5.30 -29.41 -0.16 -1.08 16 22 C -0.12 -0.83 5.30 -29.42 -0.16 -0.99 16 23 C -0.12 -0.92 5.63 -27.32 -0.15 -1.08 16 24 C 0.06 0.53 4.91 -4.49 -0.02 0.51 16 25 H 0.07 0.49 5.99 -51.93 -0.31 0.18 16 26 H 0.07 0.70 5.59 -51.93 -0.29 0.41 16 27 H 0.07 0.52 7.56 -51.93 -0.39 0.13 16 28 H 0.40 4.46 7.89 -40.82 -0.32 4.14 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.09 1.26 5.42 -51.93 -0.28 0.98 16 37 H 0.07 0.86 6.59 -51.93 -0.34 0.51 16 38 H 0.07 0.65 4.13 -51.93 -0.21 0.43 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.50 7.52 -51.93 -0.39 0.11 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 0.39 7.52 -51.93 -0.39 0.00 16 44 H 0.08 0.69 7.08 -51.93 -0.37 0.33 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.04 0.29 4.76 -51.93 -0.25 0.04 16 LS Contribution 348.87 15.07 5.26 5.26 Total: -1.00 -31.75 348.87 -9.79 -41.54 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -8.16 Total: 0.36 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: -1.32 Total: -10.36 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: -0.62 Total: -43.59 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.08 Total: -9.67 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.75 -9.79 -41.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172128362.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.098 kcal (2) G-P(sol) polarization free energy of solvation -31.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds