Wall clock time and date at job start Tue Mar 31 2020 05:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47506 * 2 1 4 4 C 1.50700 * 109.47382 * 240.00468 * 2 1 3 5 5 O 1.21282 * 119.99895 * 267.16279 * 4 2 1 6 6 N 1.34777 * 120.00320 * 87.15744 * 4 2 1 7 7 C 1.46496 * 120.00074 * 180.02562 * 6 4 2 8 8 C 1.53003 * 109.47141 * 180.02562 * 7 6 4 9 9 C 1.52998 * 109.47317 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47360 * 179.97438 * 9 8 7 11 11 H 1.08000 * 119.99523 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00090 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00031 * 180.02562 * 12 10 9 14 14 Si 1.86804 * 119.99994 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.46816 * 90.00470 * 14 12 10 16 16 H 1.48499 * 109.46893 * 210.00165 * 14 12 10 17 17 H 1.48502 * 109.47190 * 330.00679 * 14 12 10 18 18 N 1.46897 * 109.47294 * 120.00276 * 2 1 3 19 19 C 1.48006 * 111.00120 * 313.18047 * 18 2 1 20 20 C 1.50444 * 112.82854 * 191.34466 * 19 18 2 21 21 C 1.54309 * 108.49788 * 93.72389 * 20 19 18 22 22 C 1.45879 * 112.18496 * 281.45823 * 21 20 19 23 23 C 1.54311 * 112.18230 * 61.12781 * 22 21 20 24 24 C 1.47994 * 111.00495 * 184.45726 * 18 2 1 25 25 H 1.08997 * 109.47184 * 306.18928 * 1 2 3 26 26 H 1.08998 * 109.47406 * 186.18208 * 1 2 3 27 27 H 1.09004 * 109.46820 * 66.18506 * 1 2 3 28 28 H 0.96993 * 119.99930 * 0.02562 * 6 4 2 29 29 H 1.09001 * 109.47522 * 300.00271 * 7 6 4 30 30 H 1.08994 * 109.47679 * 60.00269 * 7 6 4 31 31 H 1.08998 * 109.47032 * 299.99829 * 8 7 6 32 32 H 1.09000 * 109.47398 * 59.99944 * 8 7 6 33 33 H 1.09001 * 109.47477 * 299.99885 * 9 8 7 34 34 H 1.09003 * 109.47387 * 59.99730 * 9 8 7 35 35 H 0.96993 * 120.00325 * 179.97438 * 13 12 10 36 36 H 1.09009 * 108.80661 * 312.20757 * 19 18 2 37 37 H 1.09001 * 108.81057 * 70.47732 * 19 18 2 38 38 H 1.09001 * 109.62863 * 334.02295 * 20 19 18 39 39 H 1.08998 * 109.63097 * 213.42864 * 20 19 18 40 40 H 1.09004 * 108.93611 * 160.76943 * 21 20 19 41 41 H 1.08997 * 108.94383 * 42.16570 * 21 20 19 42 42 H 1.08991 * 108.94369 * 300.42740 * 22 21 20 43 43 H 1.09000 * 108.93592 * 181.81937 * 22 21 20 44 44 H 1.08998 * 109.63147 * 161.75838 * 23 22 21 45 45 H 1.09002 * 109.63229 * 41.16326 * 23 22 21 46 46 H 1.08998 * 108.81215 * 205.70179 * 24 18 2 47 47 H 1.09009 * 108.81301 * 323.97462 * 24 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.2835 -1.8960 -1.1862 6 7 2.2025 -0.0280 -2.3803 7 6 2.6903 -0.7186 -3.5766 8 6 2.7936 0.2769 -4.7338 9 6 3.3038 -0.4442 -5.9830 10 6 3.4049 0.5363 -7.1230 11 1 3.1330 1.5704 -6.9714 12 6 3.8446 0.1131 -8.3593 13 7 3.9334 0.9688 -9.3540 14 14 4.3156 -1.6756 -8.6212 15 1 3.1219 -2.4427 -9.0592 16 1 5.3697 -1.7623 -9.6636 17 1 4.8295 -2.2435 -7.3489 18 7 2.0197 -0.6925 1.1994 19 6 1.3050 -0.2277 2.4092 20 6 1.9482 -0.7000 3.6846 21 6 2.9191 0.3934 4.1775 22 6 4.1798 0.3822 3.4436 23 6 3.9792 0.6483 1.9369 24 6 3.4951 -0.6200 1.2885 25 1 -0.3633 0.6068 0.8294 26 1 -0.3634 -1.0217 0.1107 27 1 -0.3633 0.4150 -0.9402 28 1 2.0019 0.9203 -2.4157 29 1 3.6734 -1.1442 -3.3750 30 1 1.9971 -1.5162 -3.8439 31 1 1.8108 0.7028 -4.9355 32 1 3.4871 1.0742 -4.4664 33 1 4.2867 -0.8697 -5.7810 34 1 2.6106 -1.2418 -6.2507 35 1 4.2431 0.6712 -10.2237 36 1 1.2848 0.8622 2.4084 37 1 0.2797 -0.5961 2.3751 38 1 2.4992 -1.6217 3.4974 39 1 1.1808 -0.8753 4.4386 40 1 3.1245 0.2331 5.2359 41 1 2.4466 1.3679 4.0543 42 1 4.6546 -0.5905 3.5709 43 1 4.8350 1.1504 3.8543 44 1 4.9259 0.9503 1.4891 45 1 3.2380 1.4357 1.7995 46 1 3.8544 -1.4703 1.8682 47 1 3.9115 -0.6818 0.2830 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172128367.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:08 Heat of formation + Delta-G solvation = -54.002847 kcal Electronic energy + Delta-G solvation = -22702.681745 eV Core-core repulsion = 19498.505891 eV Total energy + Delta-G solvation = -3204.175854 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.37849 -38.81051 -35.66337 -35.03955 -33.29602 -32.48843 -31.63241 -30.73433 -27.34897 -26.58545 -25.25736 -23.85885 -22.38845 -21.01563 -20.67219 -20.11450 -19.21665 -17.07604 -17.00934 -16.57339 -16.12239 -15.56745 -15.20878 -14.66991 -14.60008 -14.12110 -14.00932 -13.84980 -13.59616 -13.31596 -12.77669 -12.70586 -12.58615 -12.29747 -12.22305 -12.00993 -11.92199 -11.79601 -11.44757 -11.11245 -11.07506 -10.91761 -10.89861 -10.86708 -10.47923 -10.15632 -9.94162 -9.76258 -9.43599 -9.22956 -8.81302 -8.55915 -8.32524 -6.06795 -4.05517 2.75769 3.14489 3.31270 3.38815 3.43315 3.74448 4.33417 4.41271 4.44209 4.57336 4.75782 4.81365 4.82907 4.93109 5.00089 5.09110 5.15581 5.27383 5.31412 5.38026 5.44521 5.45397 5.55365 5.63188 5.65924 5.66643 5.73318 5.78685 5.82202 5.87941 5.95364 6.01890 6.02439 6.08115 6.37623 6.44990 6.69744 6.79437 6.82636 6.94375 7.22686 7.36113 7.68975 7.77164 8.41802 8.50108 8.96964 9.55559 11.06461 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032949 B = 0.002808 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.597408 B = 9969.847559 C =10153.422053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.070 3.930 3 H 0.057 0.943 4 C 0.511 3.489 5 O -0.523 6.523 6 N -0.729 5.729 7 C 0.116 3.884 8 C -0.113 4.113 9 C -0.011 4.011 10 C -0.522 4.522 11 H 0.072 0.928 12 C 0.066 3.934 13 N -0.903 5.903 14 Si 0.880 3.120 15 H -0.276 1.276 16 H -0.288 1.288 17 H -0.264 1.264 18 N -0.527 5.527 19 C 0.065 3.935 20 C -0.122 4.122 21 C -0.120 4.120 22 C -0.118 4.118 23 C -0.150 4.150 24 C 0.061 3.939 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.398 0.602 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.018 0.982 34 H 0.014 0.986 35 H 0.263 0.737 36 H 0.033 0.967 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.069 0.931 45 H 0.062 0.938 46 H 0.077 0.923 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.654 0.500 27.807 28.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.042 4.042 3 H 0.075 0.925 4 C 0.296 3.704 5 O -0.398 6.398 6 N -0.381 5.381 7 C -0.007 4.007 8 C -0.151 4.151 9 C -0.049 4.049 10 C -0.560 4.560 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.542 5.542 14 Si 0.707 3.293 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.189 1.189 18 N -0.253 5.253 19 C -0.062 4.062 20 C -0.160 4.160 21 C -0.158 4.158 22 C -0.155 4.155 23 C -0.189 4.189 24 C -0.067 4.067 25 H 0.085 0.915 26 H 0.092 0.908 27 H 0.086 0.914 28 H 0.231 0.769 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.037 0.963 34 H 0.033 0.967 35 H 0.073 0.927 36 H 0.051 0.949 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.088 0.912 45 H 0.081 0.919 46 H 0.095 0.905 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.519 -0.839 27.604 27.984 hybrid contribution 0.419 0.527 -0.335 0.752 sum -4.101 -0.311 27.269 27.577 Atomic orbital electron populations 1.21849 0.92098 1.03642 1.02613 1.21534 0.97057 0.95709 0.89862 0.92522 1.20411 0.78043 0.87780 0.84184 1.90698 1.49401 1.15167 1.84521 1.46213 1.67793 1.13159 1.10962 1.21619 0.99181 0.96130 0.83776 1.21698 1.01499 0.97623 0.94245 1.19503 0.96049 0.96453 0.92904 1.21097 1.44563 0.96776 0.93559 0.91030 1.25029 0.94955 0.97538 0.95958 1.69908 1.47505 1.34672 1.02141 0.86776 0.78614 0.85665 0.78258 1.20227 1.21369 1.18880 1.61580 1.04876 1.57784 1.01059 1.21807 0.98029 0.97570 0.88747 1.21446 0.99019 0.99388 0.96143 1.20608 0.96384 0.99042 0.99758 1.20547 0.97787 1.02048 0.95131 1.21958 1.01795 0.99101 0.96092 1.21881 0.86414 0.96911 1.01456 0.91538 0.90832 0.91444 0.76891 0.91930 0.91856 0.92145 0.92178 0.96335 0.96747 0.92692 0.94858 0.90725 0.90451 0.91037 0.92146 0.92363 0.91875 0.92355 0.91182 0.91889 0.90494 0.91261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 8.26 37.16 0.31 -1.00 16 2 C 0.07 0.76 2.43 -68.87 -0.17 0.59 16 3 H 0.06 0.53 7.67 -51.93 -0.40 0.13 16 4 C 0.51 7.36 5.70 -10.99 -0.06 7.29 16 5 O -0.52 -9.70 16.17 5.56 0.09 -9.61 16 6 N -0.73 -9.99 5.56 -60.30 -0.33 -10.32 16 7 C 0.12 1.93 5.67 -4.04 -0.02 1.90 16 8 C -0.11 -2.10 5.27 -26.73 -0.14 -2.24 16 9 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 10 C -0.52 -14.72 9.66 -34.44 -0.33 -15.05 16 11 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 12 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 13 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 14 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 17 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 18 N -0.53 -5.73 4.26 -229.30 -0.98 -6.71 16 19 C 0.07 0.54 3.83 -4.49 -0.02 0.52 16 20 C -0.12 -0.88 5.63 -27.32 -0.15 -1.04 16 21 C -0.12 -0.79 5.30 -29.42 -0.16 -0.95 16 22 C -0.12 -0.85 5.30 -29.42 -0.16 -1.00 16 23 C -0.15 -1.28 5.56 -27.32 -0.15 -1.43 16 24 C 0.06 0.65 4.83 -4.50 -0.02 0.63 16 25 H 0.07 0.47 6.91 -51.93 -0.36 0.11 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.40 4.39 8.47 -40.82 -0.35 4.04 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 34 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 35 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 36 H 0.03 0.26 6.44 -51.92 -0.33 -0.08 16 37 H 0.07 0.59 7.02 -51.93 -0.36 0.23 16 38 H 0.08 0.66 7.08 -51.93 -0.37 0.29 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.06 0.38 7.52 -51.93 -0.39 -0.01 16 42 H 0.06 0.47 7.52 -51.93 -0.39 0.08 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.54 6.61 -51.93 -0.34 0.19 16 46 H 0.08 0.84 6.59 -51.93 -0.34 0.49 16 47 H 0.07 0.89 6.51 -51.92 -0.34 0.55 16 LS Contribution 355.93 15.07 5.36 5.36 Total: -1.00 -32.55 355.93 -9.59 -42.15 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -8.55 Total: -0.69 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -1.29 Total: -10.30 kcal Atomic # 7 Polarization: -43.51 SS G_CDS: -0.54 Total: -44.05 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.09 Total: -9.61 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.55 -9.59 -42.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172128367.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.856 kcal (2) G-P(sol) polarization free energy of solvation -32.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds