Wall clock time and date at job start Tue Mar 31 2020 05:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47506 * 2 1 4 4 C 1.50700 * 109.47382 * 240.00468 * 2 1 3 5 5 O 1.21282 * 119.99895 * 267.16279 * 4 2 1 6 6 N 1.34777 * 120.00320 * 87.15744 * 4 2 1 7 7 C 1.46496 * 120.00074 * 180.02562 * 6 4 2 8 8 C 1.53003 * 109.47141 * 180.02562 * 7 6 4 9 9 C 1.52998 * 109.47317 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47360 * 179.97438 * 9 8 7 11 11 H 1.08000 * 119.99523 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00090 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00031 * 180.02562 * 12 10 9 14 14 Si 1.86804 * 119.99994 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.46816 * 90.00470 * 14 12 10 16 16 H 1.48499 * 109.46893 * 210.00165 * 14 12 10 17 17 H 1.48502 * 109.47190 * 330.00679 * 14 12 10 18 18 N 1.46897 * 109.47294 * 120.00276 * 2 1 3 19 19 C 1.48006 * 111.00120 * 313.18047 * 18 2 1 20 20 C 1.50444 * 112.82854 * 191.34466 * 19 18 2 21 21 C 1.54309 * 108.49788 * 93.72389 * 20 19 18 22 22 C 1.45879 * 112.18496 * 281.45823 * 21 20 19 23 23 C 1.54311 * 112.18230 * 61.12781 * 22 21 20 24 24 C 1.47994 * 111.00495 * 184.45726 * 18 2 1 25 25 H 1.08997 * 109.47184 * 306.18928 * 1 2 3 26 26 H 1.08998 * 109.47406 * 186.18208 * 1 2 3 27 27 H 1.09004 * 109.46820 * 66.18506 * 1 2 3 28 28 H 0.96993 * 119.99930 * 0.02562 * 6 4 2 29 29 H 1.09001 * 109.47522 * 300.00271 * 7 6 4 30 30 H 1.08994 * 109.47679 * 60.00269 * 7 6 4 31 31 H 1.08998 * 109.47032 * 299.99829 * 8 7 6 32 32 H 1.09000 * 109.47398 * 59.99944 * 8 7 6 33 33 H 1.09001 * 109.47477 * 299.99885 * 9 8 7 34 34 H 1.09003 * 109.47387 * 59.99730 * 9 8 7 35 35 H 0.96993 * 120.00325 * 179.97438 * 13 12 10 36 36 H 1.09009 * 108.80661 * 312.20757 * 19 18 2 37 37 H 1.09001 * 108.81057 * 70.47732 * 19 18 2 38 38 H 1.09001 * 109.62863 * 334.02295 * 20 19 18 39 39 H 1.08998 * 109.63097 * 213.42864 * 20 19 18 40 40 H 1.09004 * 108.93611 * 160.76943 * 21 20 19 41 41 H 1.08997 * 108.94383 * 42.16570 * 21 20 19 42 42 H 1.08991 * 108.94369 * 300.42740 * 22 21 20 43 43 H 1.09000 * 108.93592 * 181.81937 * 22 21 20 44 44 H 1.08998 * 109.63147 * 161.75838 * 23 22 21 45 45 H 1.09002 * 109.63229 * 41.16326 * 23 22 21 46 46 H 1.08998 * 108.81215 * 205.70179 * 24 18 2 47 47 H 1.09009 * 108.81301 * 323.97462 * 24 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.2835 -1.8960 -1.1862 6 7 2.2025 -0.0280 -2.3803 7 6 2.6903 -0.7186 -3.5766 8 6 2.7936 0.2769 -4.7338 9 6 3.3038 -0.4442 -5.9830 10 6 3.4049 0.5363 -7.1230 11 1 3.1330 1.5704 -6.9714 12 6 3.8446 0.1131 -8.3593 13 7 3.9334 0.9688 -9.3540 14 14 4.3156 -1.6756 -8.6212 15 1 3.1219 -2.4427 -9.0592 16 1 5.3697 -1.7623 -9.6636 17 1 4.8295 -2.2435 -7.3489 18 7 2.0197 -0.6925 1.1994 19 6 1.3050 -0.2277 2.4092 20 6 1.9482 -0.7000 3.6846 21 6 2.9191 0.3934 4.1775 22 6 4.1798 0.3822 3.4436 23 6 3.9792 0.6483 1.9369 24 6 3.4951 -0.6200 1.2885 25 1 -0.3633 0.6068 0.8294 26 1 -0.3634 -1.0217 0.1107 27 1 -0.3633 0.4150 -0.9402 28 1 2.0019 0.9203 -2.4157 29 1 3.6734 -1.1442 -3.3750 30 1 1.9971 -1.5162 -3.8439 31 1 1.8108 0.7028 -4.9355 32 1 3.4871 1.0742 -4.4664 33 1 4.2867 -0.8697 -5.7810 34 1 2.6106 -1.2418 -6.2507 35 1 4.2431 0.6712 -10.2237 36 1 1.2848 0.8622 2.4084 37 1 0.2797 -0.5961 2.3751 38 1 2.4992 -1.6217 3.4974 39 1 1.1808 -0.8753 4.4386 40 1 3.1245 0.2331 5.2359 41 1 2.4466 1.3679 4.0543 42 1 4.6546 -0.5905 3.5709 43 1 4.8350 1.1504 3.8543 44 1 4.9259 0.9503 1.4891 45 1 3.2380 1.4357 1.7995 46 1 3.8544 -1.4703 1.8682 47 1 3.9115 -0.6818 0.2830 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172128367.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:08 Heat of formation + Delta-G solvation = -76.218442 kcal Electronic energy + Delta-G solvation = -22703.645086 eV Core-core repulsion = 19498.505891 eV Total energy + Delta-G solvation = -3205.139195 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.32457 -39.73187 -37.02374 -35.93024 -35.13591 -33.33593 -33.14473 -31.66058 -29.01621 -27.29142 -26.10698 -25.06187 -23.70038 -22.24838 -21.69416 -21.09232 -20.16895 -18.96601 -18.05104 -17.65150 -16.95708 -16.70440 -16.43889 -16.18242 -15.56646 -15.37271 -15.02654 -14.78183 -14.67723 -14.50802 -14.03737 -13.83198 -13.74113 -13.40844 -13.22929 -13.02799 -12.89674 -12.75783 -12.70535 -12.63925 -12.16536 -11.91884 -11.80509 -11.75285 -11.60515 -11.52923 -11.43722 -11.34116 -11.09806 -10.77062 -10.68252 -10.07145 -9.09107 -8.30271 -6.34075 1.36070 1.37713 1.49522 1.64331 2.10147 2.35521 2.89334 3.05478 3.69779 3.72480 3.83576 4.01261 4.07511 4.11252 4.15561 4.16439 4.20396 4.35447 4.42147 4.49158 4.51293 4.67062 4.74967 4.79649 4.81534 4.87589 4.88036 4.92401 5.02494 5.02973 5.09888 5.20561 5.22471 5.27784 5.31780 5.39833 5.40228 5.47403 5.50508 5.54603 5.64302 6.01745 6.21568 6.26603 6.62893 6.74045 7.30405 7.31043 8.86136 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032949 B = 0.002808 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.597408 B = 9969.847559 C =10153.422053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.076 3.924 3 H 0.078 0.922 4 C 0.510 3.490 5 O -0.569 6.569 6 N -0.720 5.720 7 C 0.129 3.871 8 C -0.099 4.099 9 C -0.012 4.012 10 C -0.530 4.530 11 H 0.038 0.962 12 C 0.005 3.995 13 N -0.950 5.950 14 Si 0.946 3.054 15 H -0.267 1.267 16 H -0.284 1.284 17 H -0.249 1.249 18 N -0.547 5.547 19 C 0.065 3.935 20 C -0.121 4.121 21 C -0.118 4.118 22 C -0.115 4.115 23 C -0.144 4.144 24 C 0.067 3.933 25 H 0.092 0.908 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.413 0.587 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.266 0.734 36 H 0.046 0.954 37 H 0.079 0.921 38 H 0.060 0.940 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.068 0.932 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.273 0.472 29.909 30.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.036 4.036 3 H 0.095 0.905 4 C 0.297 3.703 5 O -0.447 6.447 6 N -0.373 5.373 7 C 0.005 3.995 8 C -0.137 4.137 9 C -0.050 4.050 10 C -0.568 4.568 11 H 0.057 0.943 12 C -0.192 4.192 13 N -0.591 5.591 14 Si 0.770 3.230 15 H -0.192 1.192 16 H -0.210 1.210 17 H -0.173 1.173 18 N -0.273 5.273 19 C -0.061 4.061 20 C -0.158 4.158 21 C -0.155 4.155 22 C -0.153 4.153 23 C -0.183 4.183 24 C -0.061 4.061 25 H 0.110 0.890 26 H 0.076 0.924 27 H 0.092 0.908 28 H 0.249 0.751 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.038 0.962 34 H 0.037 0.963 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.098 0.902 38 H 0.079 0.921 39 H 0.105 0.895 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.155 -0.831 29.733 30.188 hybrid contribution 0.597 0.598 -0.981 1.295 sum -4.558 -0.233 28.752 29.112 Atomic orbital electron populations 1.21856 0.90510 1.03271 1.04102 1.21531 0.98097 0.95903 0.88034 0.90479 1.21127 0.76833 0.87341 0.85024 1.90674 1.51435 1.17341 1.85262 1.46050 1.67287 1.13859 1.10068 1.21249 0.98683 0.95391 0.84181 1.21469 1.01606 0.97594 0.93003 1.19468 0.96446 0.95810 0.93301 1.21458 1.43734 0.96357 0.95267 0.94340 1.25972 0.95096 1.02381 0.95727 1.70051 1.49067 1.37096 1.02850 0.85711 0.78636 0.79865 0.78780 1.19216 1.20974 1.17271 1.61537 1.04942 1.58781 1.02062 1.21895 0.97944 0.98287 0.87956 1.21448 0.99409 0.98849 0.96130 1.20588 0.95757 0.99007 1.00174 1.20531 0.98472 1.02057 0.94212 1.21891 1.01672 0.97898 0.96858 1.21768 0.86661 0.97838 0.99812 0.88966 0.92393 0.90779 0.75094 0.92882 0.92627 0.91595 0.91775 0.96244 0.96282 0.92487 0.93631 0.90248 0.92112 0.89498 0.91101 0.91710 0.92442 0.91426 0.91327 0.91405 0.91380 0.94022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 8.26 71.98 0.59 -1.60 16 2 C 0.08 1.51 2.43 44.17 0.11 1.62 16 3 H 0.08 1.23 7.67 -2.38 -0.02 1.21 16 4 C 0.51 14.29 5.70 87.66 0.50 14.79 16 5 O -0.57 -21.24 16.17 -3.04 -0.05 -21.29 16 6 N -0.72 -18.81 5.56 -463.07 -2.57 -21.38 16 7 C 0.13 4.18 5.67 86.38 0.49 4.67 16 8 C -0.10 -3.58 5.27 30.59 0.16 -3.42 16 9 C -0.01 -0.56 4.04 29.85 0.12 -0.44 16 10 C -0.53 -30.19 9.66 25.60 0.25 -29.94 16 11 H 0.04 2.37 7.99 -2.91 -0.02 2.35 16 12 C 0.01 0.30 5.47 84.65 0.46 0.76 16 13 N -0.95 -59.46 13.96 21.45 0.30 -59.16 16 14 Si 0.95 44.67 27.47 68.60 1.88 46.55 16 15 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 16 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 17 H -0.25 -11.05 6.54 99.48 0.65 -10.40 16 18 N -0.55 -11.24 4.26 -879.39 -3.74 -14.99 16 19 C 0.07 0.93 3.83 85.26 0.33 1.26 16 20 C -0.12 -1.50 5.63 30.21 0.17 -1.33 16 21 C -0.12 -1.26 5.30 28.85 0.15 -1.10 16 22 C -0.12 -1.46 5.30 28.86 0.15 -1.30 16 23 C -0.14 -2.24 5.56 30.21 0.17 -2.07 16 24 C 0.07 1.40 4.83 85.27 0.41 1.81 16 25 H 0.09 0.98 6.91 -2.39 -0.02 0.97 16 26 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.41 8.28 8.47 -92.71 -0.79 7.50 16 29 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.02 0.89 7.20 -2.39 -0.02 0.87 16 34 H 0.02 0.86 7.57 -2.39 -0.02 0.84 16 35 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 36 H 0.05 0.55 6.44 -2.38 -0.02 0.53 16 37 H 0.08 1.06 7.02 -2.39 -0.02 1.04 16 38 H 0.06 0.98 7.08 -2.39 -0.02 0.96 16 39 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.06 0.63 7.52 -2.39 -0.02 0.62 16 42 H 0.06 0.79 7.52 -2.39 -0.02 0.77 16 43 H 0.07 0.74 8.14 -2.39 -0.02 0.73 16 44 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.07 0.99 6.61 -2.39 -0.02 0.97 16 46 H 0.07 1.51 6.59 -2.39 -0.02 1.49 16 47 H 0.04 1.09 6.51 -2.38 -0.02 1.07 16 Total: -1.00 -71.26 355.93 -0.03 -71.29 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.09 Total: 15.29 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: 4.07 Total: -16.31 kcal Atomic # 7 Polarization: -89.51 SS G_CDS: -6.02 Total: -95.53 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.05 Total: -21.29 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.88 Total: 46.55 kcal Total: -71.26 -0.03 -71.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172128367.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.931 kcal (2) G-P(sol) polarization free energy of solvation -71.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds