Wall clock time and date at job start Tue Mar 31 2020 05:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46972 * 2 1 4 4 N 1.46899 * 109.46662 * 119.99715 * 2 1 3 5 5 C 1.46853 * 110.99925 * 50.79377 * 4 2 1 6 6 C 1.53041 * 109.52162 * 185.83784 * 5 4 2 7 7 C 1.53120 * 109.27742 * 300.81948 * 6 5 4 8 8 C 1.50704 * 109.51957 * 177.56297 * 7 6 5 9 9 O 1.21284 * 119.99356 * 252.25239 * 8 7 6 10 10 N 1.34776 * 120.00279 * 72.25095 * 8 7 6 11 11 C 1.46496 * 119.99581 * 183.70146 * 10 8 7 12 12 C 1.46498 * 119.99624 * 3.70253 * 10 8 7 13 13 H 1.08999 * 109.47502 * 354.03186 * 12 10 8 14 14 C 1.52998 * 109.47103 * 114.04029 * 12 10 8 15 15 C 1.50705 * 109.46699 * 234.03567 * 12 10 8 16 16 H 1.08002 * 120.00001 * 0.02562 * 15 12 10 17 17 C 1.37878 * 120.00140 * 180.02562 * 15 12 10 18 18 N 1.31521 * 119.99719 * 359.97438 * 17 15 12 19 19 Si 1.86795 * 120.00261 * 180.02562 * 17 15 12 20 20 H 1.48496 * 109.47222 * 59.99541 * 19 17 15 21 21 H 1.48500 * 109.47349 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47085 * 299.99787 * 19 17 15 23 23 C 1.53117 * 109.16148 * 57.65687 * 7 6 5 24 24 C 1.46845 * 111.00135 * 175.00053 * 4 2 1 25 25 H 1.08995 * 109.47493 * 300.00592 * 1 2 3 26 26 H 1.09006 * 109.46517 * 60.00121 * 1 2 3 27 27 H 1.09002 * 109.47030 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47140 * 239.99800 * 2 1 3 29 29 H 1.09000 * 109.46858 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47785 * 299.99680 * 3 2 1 31 31 H 1.09007 * 109.47463 * 59.99831 * 3 2 1 32 32 H 1.09002 * 109.46027 * 305.84847 * 5 4 2 33 33 H 1.08999 * 109.46516 * 65.81872 * 5 4 2 34 34 H 1.08998 * 109.50044 * 180.87713 * 6 5 4 35 35 H 1.09002 * 109.50217 * 60.76162 * 6 5 4 36 36 H 1.08999 * 109.57466 * 297.71842 * 7 6 5 37 37 H 1.09000 * 109.47289 * 95.03302 * 11 10 8 38 38 H 1.09002 * 109.46558 * 215.02700 * 11 10 8 39 39 H 1.09001 * 109.47419 * 335.02967 * 11 10 8 40 40 H 1.08994 * 109.47007 * 179.97438 * 14 12 10 41 41 H 1.09000 * 109.46735 * 299.99468 * 14 12 10 42 42 H 1.09003 * 109.46999 * 59.99591 * 14 12 10 43 43 H 0.96996 * 119.99933 * 180.02562 * 18 17 15 44 44 H 1.08995 * 109.50595 * 182.40461 * 23 7 6 45 45 H 1.09004 * 109.50440 * 62.28464 * 23 7 6 46 46 H 1.09000 * 109.46141 * 294.17802 * 24 4 2 47 47 H 1.09000 * 109.46031 * 54.15727 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.3779 -2.0050 1.3482 6 6 1.8002 -2.6329 2.6784 7 6 3.3238 -2.7828 2.7056 8 6 3.7507 -3.3454 4.0369 9 8 4.3132 -2.6349 4.8431 10 7 3.5076 -4.6378 4.3317 11 6 3.8491 -5.1639 5.6556 12 6 2.9017 -5.5165 3.3281 13 1 2.6232 -4.9302 2.4525 14 6 3.9075 -6.5951 2.9209 15 6 1.6729 -6.1685 3.9077 16 1 1.3730 -5.9499 4.9219 17 6 0.9314 -7.0442 3.1431 18 7 1.2964 -7.3100 1.9078 19 14 -0.5921 -7.8519 3.8612 20 1 -1.5683 -6.8047 4.2555 21 1 -1.2062 -8.7426 2.8441 22 1 -0.2133 -8.6501 5.0548 23 6 3.9677 -1.4089 2.5003 24 6 3.4826 -0.8164 1.1753 25 1 -0.3634 0.5139 0.8899 26 1 -0.3632 0.5139 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6768 1.9564 -0.8899 31 1 1.6767 1.9564 0.8900 32 1 0.2948 -1.8836 1.3315 33 1 1.6833 -2.6537 0.5272 34 1 1.3360 -3.6137 2.7814 35 1 1.4829 -1.9914 3.5006 36 1 3.6388 -3.4556 1.9080 37 1 2.9714 -5.1225 6.3006 38 1 4.1820 -6.1975 5.5609 39 1 4.6481 -4.5632 6.0903 40 1 3.4565 -7.2491 2.1746 41 1 4.7962 -6.1235 2.5017 42 1 4.1859 -7.1814 3.7966 43 1 0.7746 -7.9257 1.3698 44 1 5.0522 -1.5152 2.4760 45 1 3.6846 -0.7482 3.3198 46 1 3.7781 -1.4707 0.3552 47 1 3.9282 0.1681 1.0332 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172772610.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:25 Heat of formation + Delta-G solvation = -42.215850 kcal Electronic energy + Delta-G solvation = -24122.590285 eV Core-core repulsion = 20918.925554 eV Total energy + Delta-G solvation = -3203.664732 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.86552 -38.36693 -35.55716 -34.70596 -32.63561 -30.83318 -30.56658 -29.15816 -27.22058 -26.63924 -25.32979 -24.01912 -22.44323 -21.46616 -20.32738 -19.60634 -18.12627 -16.64788 -16.44158 -16.00547 -15.06747 -14.77599 -14.72077 -14.39328 -14.30981 -13.71453 -13.30312 -13.12806 -12.98811 -12.72454 -12.67030 -12.24336 -12.08066 -11.80879 -11.58910 -11.44665 -11.33497 -11.14997 -11.06672 -11.03397 -10.94263 -10.85090 -10.74890 -10.65666 -10.27378 -10.17597 -10.12913 -9.85073 -9.31303 -8.82158 -8.54405 -8.11900 -7.58065 -6.19262 -4.27285 3.22372 3.27582 3.30063 3.44088 3.98730 4.03620 4.31604 4.88598 4.97049 5.05939 5.12243 5.25958 5.29838 5.36931 5.52055 5.57781 5.60554 5.68912 5.76616 5.81450 5.86521 5.92206 5.97872 6.02876 6.07365 6.22918 6.23816 6.27103 6.31275 6.34674 6.47355 6.49232 6.59823 6.70025 6.73880 6.79645 6.97206 7.20073 7.30629 7.32564 7.42976 7.66577 7.84246 8.11097 8.50221 8.75908 9.06804 9.41253 10.85420 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015867 B = 0.005676 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.269559 B = 4931.617922 C = 6094.731425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.075 3.925 3 C -0.143 4.143 4 N -0.534 5.534 5 C 0.056 3.944 6 C -0.109 4.109 7 C -0.101 4.101 8 C 0.514 3.486 9 O -0.577 6.577 10 N -0.592 5.592 11 C 0.096 3.904 12 C 0.251 3.749 13 H 0.059 0.941 14 C -0.152 4.152 15 C -0.527 4.527 16 H 0.061 0.939 17 C 0.068 3.932 18 N -0.888 5.888 19 Si 0.897 3.103 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.276 1.276 23 C -0.094 4.094 24 C 0.056 3.944 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.037 0.963 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.035 0.965 34 H 0.098 0.902 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.046 0.954 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.094 0.906 41 H 0.011 0.989 42 H 0.032 0.968 43 H 0.265 0.735 44 H 0.065 0.935 45 H 0.078 0.922 46 H 0.030 0.970 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.819 10.268 -4.720 11.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.033 4.033 3 C -0.201 4.201 4 N -0.260 5.260 5 C -0.071 4.071 6 C -0.147 4.147 7 C -0.123 4.123 8 C 0.302 3.698 9 O -0.458 6.458 10 N -0.322 5.322 11 C -0.047 4.047 12 C 0.150 3.850 13 H 0.077 0.923 14 C -0.211 4.211 15 C -0.565 4.565 16 H 0.080 0.920 17 C -0.135 4.135 18 N -0.526 5.526 19 Si 0.724 3.276 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.202 1.202 23 C -0.132 4.132 24 C -0.072 4.072 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.053 0.947 34 H 0.116 0.884 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.064 0.936 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.113 0.887 41 H 0.030 0.970 42 H 0.051 0.949 43 H 0.074 0.926 44 H 0.083 0.917 45 H 0.096 0.904 46 H 0.048 0.952 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.913 10.757 -4.066 11.536 hybrid contribution -0.641 -1.264 -0.407 1.475 sum 0.272 9.493 -4.473 10.498 Atomic orbital electron populations 1.21964 0.94540 1.02311 1.01952 1.21576 0.95519 0.94981 0.91228 1.21854 1.00963 0.95455 1.01804 1.62037 1.05627 1.20449 1.37899 1.22171 0.99420 0.88261 0.97296 1.21657 0.93209 1.02684 0.97130 1.21261 0.97641 0.97337 0.96011 1.20500 0.78564 0.81999 0.88760 1.90571 1.44566 1.59314 1.51380 1.48241 1.59503 1.09612 1.14848 1.21332 0.99674 0.98902 0.84794 1.19136 0.90900 0.87857 0.87096 0.92341 1.22145 0.96822 1.00712 1.01422 1.21273 1.08958 1.26216 1.00056 0.92044 1.24866 0.97717 0.96117 0.94778 1.69848 1.39324 1.35588 1.07887 0.86574 0.82841 0.79356 0.78803 1.20137 1.21203 1.20196 1.21385 0.99260 0.95361 0.97193 1.22137 0.87794 1.00143 0.97135 0.91747 0.92547 0.92086 0.94522 0.92690 0.92649 0.91824 0.90079 0.94681 0.88360 0.91372 0.89418 0.93559 0.91780 0.92188 0.88743 0.97027 0.94890 0.92554 0.91666 0.90366 0.95157 0.90672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 8.65 37.16 0.32 -1.28 16 2 C 0.08 0.88 2.69 -67.71 -0.18 0.69 16 3 C -0.14 -1.43 9.10 37.16 0.34 -1.09 16 4 N -0.53 -7.42 4.52 -226.68 -1.03 -8.44 16 5 C 0.06 0.85 5.01 -3.83 -0.02 0.83 16 6 C -0.11 -1.92 5.03 -26.65 -0.13 -2.06 16 7 C -0.10 -1.83 1.72 -91.65 -0.16 -1.99 16 8 C 0.51 10.85 6.92 -10.98 -0.08 10.78 16 9 O -0.58 -13.30 15.43 5.55 0.09 -13.21 16 10 N -0.59 -12.76 2.75 -175.26 -0.48 -13.24 16 11 C 0.10 1.91 9.61 59.84 0.57 2.48 16 12 C 0.25 5.75 1.80 -69.08 -0.12 5.62 16 13 H 0.06 1.38 4.48 -51.93 -0.23 1.15 16 14 C -0.15 -3.43 9.04 37.16 0.34 -3.10 16 15 C -0.53 -13.13 8.12 -34.44 -0.28 -13.41 16 16 H 0.06 1.56 7.18 -52.49 -0.38 1.19 16 17 C 0.07 1.71 5.30 -17.82 -0.09 1.61 16 18 N -0.89 -22.96 11.32 55.43 0.63 -22.34 16 19 Si 0.90 19.96 29.54 -169.99 -5.02 14.94 16 20 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 23 C -0.09 -1.50 4.80 -26.65 -0.13 -1.63 16 24 C 0.06 0.76 5.29 -3.84 -0.02 0.74 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.68 6.19 -51.93 -0.32 0.36 16 28 H 0.04 0.44 8.13 -51.93 -0.42 0.02 16 29 H 0.05 0.54 6.40 -51.93 -0.33 0.21 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 1.16 5.83 -51.93 -0.30 0.86 16 33 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.10 1.99 6.12 -51.93 -0.32 1.67 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.09 1.62 7.06 -51.93 -0.37 1.25 16 37 H 0.05 0.90 7.80 -51.93 -0.41 0.50 16 38 H 0.06 1.21 6.76 -51.93 -0.35 0.86 16 39 H 0.06 1.15 7.23 -51.93 -0.38 0.77 16 40 H 0.09 2.31 6.07 -51.93 -0.32 1.99 16 41 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 42 H 0.03 0.72 6.91 -51.93 -0.36 0.36 16 43 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.08 1.36 7.89 -51.93 -0.41 0.95 16 46 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 0.91 6.18 -51.93 -0.32 0.59 16 LS Contribution 349.76 15.07 5.27 5.27 Total: -1.00 -26.96 349.76 -8.34 -35.30 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -8.15 Total: 3.51 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: 0.36 Total: -1.78 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: -0.88 Total: -44.02 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.09 Total: -13.21 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -26.96 -8.34 -35.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172772610.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.916 kcal (2) G-P(sol) polarization free energy of solvation -26.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds