Wall clock time and date at job start Tue Mar 31 2020 05:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 109.47211 * 2 1 4 4 N 1.46898 * 109.46692 * 120.00049 * 2 1 3 5 5 C 1.46855 * 110.99739 * 180.02562 * 4 2 1 6 6 C 1.53034 * 109.52524 * 185.83924 * 5 4 2 7 7 C 1.53118 * 109.27979 * 300.82064 * 6 5 4 8 8 C 1.50698 * 109.52652 * 177.56144 * 7 6 5 9 9 O 1.21283 * 119.99634 * 341.45398 * 8 7 6 10 10 N 1.34768 * 120.00245 * 161.45900 * 8 7 6 11 11 C 1.46505 * 120.00335 * 184.27695 * 10 8 7 12 12 C 1.46509 * 119.99986 * 4.27632 * 10 8 7 13 13 H 1.08999 * 109.47204 * 6.32475 * 12 10 8 14 14 C 1.52997 * 109.47147 * 246.32242 * 12 10 8 15 15 C 1.50699 * 109.46924 * 126.32243 * 12 10 8 16 16 H 1.08000 * 120.00397 * 359.97438 * 15 12 10 17 17 C 1.37878 * 120.00245 * 180.02562 * 15 12 10 18 18 N 1.31513 * 119.99667 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 120.00546 * 180.02562 * 17 15 12 20 20 H 1.48495 * 109.46952 * 269.99964 * 19 17 15 21 21 H 1.48504 * 109.47000 * 29.99466 * 19 17 15 22 22 H 1.48501 * 109.47386 * 149.99403 * 19 17 15 23 23 C 1.53122 * 109.21447 * 57.61768 * 7 6 5 24 24 C 1.46847 * 111.00101 * 304.20395 * 4 2 1 25 25 H 1.08996 * 109.46728 * 59.99655 * 1 2 3 26 26 H 1.08997 * 109.47075 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46496 * 300.00186 * 1 2 3 28 28 H 1.08993 * 109.47098 * 239.99713 * 2 1 3 29 29 H 1.09000 * 109.47047 * 179.97438 * 3 2 1 30 30 H 1.09005 * 109.47009 * 299.99837 * 3 2 1 31 31 H 1.09005 * 109.46942 * 60.00035 * 3 2 1 32 32 H 1.08996 * 109.46288 * 65.82082 * 5 4 2 33 33 H 1.09007 * 109.46043 * 305.85343 * 5 4 2 34 34 H 1.08995 * 109.50464 * 180.87518 * 6 5 4 35 35 H 1.09000 * 109.50471 * 60.75720 * 6 5 4 36 36 H 1.09006 * 109.51978 * 297.68894 * 7 6 5 37 37 H 1.08992 * 109.46894 * 272.45032 * 11 10 8 38 38 H 1.08997 * 109.46763 * 32.45357 * 11 10 8 39 39 H 1.09004 * 109.46958 * 152.44863 * 11 10 8 40 40 H 1.09002 * 109.47319 * 60.00084 * 14 12 10 41 41 H 1.09000 * 109.46993 * 180.02562 * 14 12 10 42 42 H 1.09009 * 109.47069 * 299.99682 * 14 12 10 43 43 H 0.96998 * 120.00539 * 180.02562 * 18 17 15 44 44 H 1.09002 * 109.49752 * 62.32288 * 23 7 6 45 45 H 1.08994 * 109.50448 * 182.43925 * 23 7 6 46 46 H 1.08995 * 109.46502 * 294.17828 * 24 4 2 47 47 H 1.08998 * 109.45804 * 54.16556 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 3.4877 -0.7116 1.2337 6 6 3.9607 -1.5627 2.4143 7 6 3.4088 -0.9736 3.7155 8 6 3.8216 -1.8415 4.8762 9 8 4.1867 -2.9815 4.6812 10 7 3.7850 -1.3509 6.1309 11 6 4.2743 -2.1614 7.2490 12 6 3.2558 -0.0071 6.3769 13 1 2.8400 0.3944 5.4528 14 6 4.3836 0.9034 6.8666 15 6 2.1754 -0.0768 7.4252 16 1 1.9092 -1.0270 7.8640 17 6 1.5259 1.0724 7.8234 18 7 1.8497 2.2295 7.2886 19 14 0.1872 0.9862 9.1233 20 1 -1.1268 0.7680 8.4669 21 1 0.4699 -0.1384 10.0510 22 1 0.1544 2.2603 9.8854 23 6 1.8807 -0.9187 3.6355 24 6 1.4684 -0.0871 2.4185 25 1 -0.3632 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.8616 0.3060 1.3467 33 1 3.8671 -1.1367 0.3045 34 1 5.0501 -1.5639 2.4487 35 1 3.5987 -2.5839 2.2950 36 1 3.8026 0.0332 3.8552 37 1 3.4656 -2.7881 7.6246 38 1 5.0950 -2.7926 6.9082 39 1 4.6265 -1.5062 8.0458 40 1 5.1650 0.9539 6.1083 41 1 3.9897 1.9031 7.0500 42 1 4.7993 0.5019 7.7908 43 1 1.3931 3.0381 7.5689 44 1 1.4851 -1.9295 3.5359 45 1 1.4851 -0.4601 4.5417 46 1 1.8522 0.9274 2.5257 47 1 0.3810 -0.0588 2.3501 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172772617.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:27 Heat of formation + Delta-G solvation = -42.587102 kcal Electronic energy + Delta-G solvation = -24211.837025 eV Core-core repulsion = 21008.156195 eV Total energy + Delta-G solvation = -3203.680830 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.93385 -38.48899 -35.55861 -34.67273 -32.63763 -30.86013 -30.20377 -29.15826 -27.25289 -26.68477 -25.32947 -24.12443 -22.85628 -21.49621 -20.55505 -19.10419 -18.10271 -16.56021 -16.39836 -15.90638 -15.09917 -14.96463 -14.56131 -14.46753 -14.15866 -13.92170 -13.44584 -13.31414 -12.99074 -12.72173 -12.54099 -12.17009 -12.10764 -11.78961 -11.61481 -11.51356 -11.34850 -11.30230 -11.09940 -11.00688 -10.91152 -10.89249 -10.65691 -10.59962 -10.29351 -10.18096 -10.13223 -9.94254 -9.29907 -8.82833 -8.54377 -8.09464 -7.59043 -6.19592 -4.27287 3.20794 3.28295 3.31100 3.44349 4.00660 4.04150 4.31753 4.85376 4.99638 5.07869 5.12136 5.21828 5.27271 5.33179 5.50004 5.54365 5.58182 5.62636 5.75574 5.81129 5.86985 5.92820 5.97762 6.00742 6.05682 6.21537 6.24161 6.24489 6.29229 6.34866 6.46479 6.46943 6.58155 6.67056 6.72742 6.78361 6.96081 7.19901 7.29179 7.30610 7.42901 7.66842 7.84589 8.10990 8.50249 8.76114 9.06993 9.41227 10.85225 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015354 B = 0.005818 C = 0.004740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.221359 B = 4811.516294 C = 5905.145514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.077 3.923 3 C -0.189 4.189 4 N -0.532 5.532 5 C 0.057 3.943 6 C -0.095 4.095 7 C -0.101 4.101 8 C 0.513 3.487 9 O -0.575 6.575 10 N -0.593 5.593 11 C 0.100 3.900 12 C 0.250 3.750 13 H 0.060 0.940 14 C -0.152 4.152 15 C -0.526 4.526 16 H 0.062 0.938 17 C 0.067 3.933 18 N -0.888 5.888 19 Si 0.897 3.103 20 H -0.279 1.279 21 H -0.274 1.274 22 H -0.286 1.286 23 C -0.108 4.108 24 C 0.054 3.946 25 H 0.055 0.945 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.079 0.921 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.035 0.965 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.044 0.956 38 H 0.053 0.947 39 H 0.068 0.932 40 H 0.011 0.989 41 H 0.094 0.906 42 H 0.032 0.968 43 H 0.264 0.736 44 H 0.069 0.931 45 H 0.093 0.907 46 H 0.039 0.961 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.454 -0.590 -11.195 11.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.032 4.032 3 C -0.248 4.248 4 N -0.256 5.256 5 C -0.071 4.071 6 C -0.133 4.133 7 C -0.122 4.122 8 C 0.301 3.699 9 O -0.457 6.457 10 N -0.322 5.322 11 C -0.043 4.043 12 C 0.149 3.851 13 H 0.077 0.923 14 C -0.211 4.211 15 C -0.564 4.564 16 H 0.080 0.920 17 C -0.135 4.135 18 N -0.527 5.527 19 Si 0.724 3.276 20 H -0.205 1.205 21 H -0.198 1.198 22 H -0.211 1.211 23 C -0.146 4.146 24 C -0.073 4.073 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.097 0.903 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.030 0.970 41 H 0.112 0.888 42 H 0.051 0.949 43 H 0.074 0.926 44 H 0.087 0.913 45 H 0.112 0.888 46 H 0.057 0.943 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.430 -1.448 -11.259 11.360 hybrid contribution -0.436 1.078 0.940 1.496 sum -0.006 -0.369 -10.319 10.325 Atomic orbital electron populations 1.21920 0.94527 1.02415 1.01691 1.21672 0.95634 0.92264 0.93628 1.22506 1.01581 0.98346 1.02347 1.62234 1.07957 1.53490 1.01962 1.22098 0.87573 0.98608 0.98848 1.21400 0.99692 1.00344 0.91910 1.21261 0.97838 0.99692 0.93433 1.20488 0.77672 0.87326 0.84395 1.90575 1.50293 1.19277 1.85525 1.48273 1.60014 1.18522 1.05435 1.21307 0.98218 0.95044 0.89769 1.19151 0.91570 0.76371 0.97973 0.92286 1.22150 0.96969 1.03969 0.98011 1.21314 1.18518 0.94108 1.22505 0.92004 1.24865 0.97030 0.95168 0.96465 1.69854 1.41616 0.98366 1.42818 0.86510 0.81967 0.77527 0.81560 1.20540 1.19847 1.21133 1.21635 0.93144 1.01356 0.98472 1.22162 0.99992 0.96123 0.89051 0.92563 0.91861 0.92166 0.90329 0.92448 0.92416 0.92092 0.94667 0.91047 0.91741 0.90245 0.89467 0.93777 0.92785 0.91324 0.97014 0.88765 0.94904 0.92619 0.91257 0.88847 0.94325 0.90234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 8.84 37.16 0.33 -1.20 16 2 C 0.08 0.86 3.03 -67.71 -0.20 0.65 16 3 C -0.19 -2.02 8.51 37.16 0.32 -1.70 16 4 N -0.53 -7.22 4.68 -226.68 -1.06 -8.28 16 5 C 0.06 0.76 4.89 -3.83 -0.02 0.74 16 6 C -0.10 -1.50 4.88 -26.65 -0.13 -1.63 16 7 C -0.10 -1.81 1.71 -91.65 -0.16 -1.97 16 8 C 0.51 10.85 6.86 -10.99 -0.08 10.77 16 9 O -0.58 -13.32 15.64 5.56 0.09 -13.24 16 10 N -0.59 -12.80 2.75 -175.26 -0.48 -13.28 16 11 C 0.10 1.99 9.33 59.85 0.56 2.55 16 12 C 0.25 5.74 1.94 -69.08 -0.13 5.61 16 13 H 0.06 1.39 4.36 -51.93 -0.23 1.17 16 14 C -0.15 -3.41 9.05 37.16 0.34 -3.08 16 15 C -0.53 -13.22 8.30 -34.44 -0.29 -13.51 16 16 H 0.06 1.59 7.36 -52.49 -0.39 1.21 16 17 C 0.07 1.70 5.30 -17.82 -0.09 1.61 16 18 N -0.89 -23.00 11.32 55.43 0.63 -22.38 16 19 Si 0.90 20.06 29.54 -169.99 -5.02 15.04 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 23 C -0.11 -1.89 5.05 -26.64 -0.13 -2.03 16 24 C 0.05 0.81 4.67 -3.83 -0.02 0.79 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.66 6.22 -51.93 -0.32 0.34 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.62 6.53 -51.93 -0.34 0.28 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.72 6.63 -51.93 -0.34 0.37 16 32 H 0.04 0.47 6.63 -51.93 -0.34 0.12 16 33 H 0.07 0.85 8.12 -51.92 -0.42 0.42 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.08 1.37 7.83 -51.93 -0.41 0.96 16 36 H 0.09 1.60 7.06 -51.93 -0.37 1.23 16 37 H 0.04 0.87 8.07 -51.93 -0.42 0.45 16 38 H 0.05 1.02 7.56 -51.93 -0.39 0.63 16 39 H 0.07 1.31 6.78 -51.93 -0.35 0.96 16 40 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 41 H 0.09 2.29 6.07 -51.93 -0.32 1.98 16 42 H 0.03 0.71 6.94 -51.92 -0.36 0.35 16 43 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 44 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 45 H 0.09 1.86 6.40 -51.93 -0.33 1.53 16 46 H 0.04 0.59 6.71 -51.93 -0.35 0.25 16 47 H 0.08 1.12 5.90 -51.93 -0.31 0.82 16 LS Contribution 348.09 15.07 5.25 5.25 Total: -1.00 -27.13 348.09 -8.40 -35.53 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -8.08 Total: 3.77 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 0.29 Total: -2.41 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: -0.92 Total: -43.94 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.09 Total: -13.24 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -27.13 -8.40 -35.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172772617.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.060 kcal (2) G-P(sol) polarization free energy of solvation -27.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds