Wall clock time and date at job start Tue Mar 31 2020 05:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47129 * 2 1 4 4 C 1.50699 * 109.47391 * 240.00550 * 2 1 3 5 5 O 1.21281 * 119.99861 * 327.50670 * 4 2 1 6 6 N 1.34775 * 120.00518 * 147.50421 * 4 2 1 7 7 C 1.46508 * 119.99679 * 5.30605 * 6 4 2 8 8 C 1.50700 * 109.47153 * 91.09285 * 7 6 4 9 9 H 1.08001 * 119.99705 * 3.98032 * 8 7 6 10 10 C 1.37868 * 119.99681 * 183.98218 * 8 7 6 11 11 N 1.31515 * 120.00243 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 119.99912 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46986 * 89.99840 * 12 10 8 14 14 H 1.48504 * 109.47017 * 210.00154 * 12 10 8 15 15 H 1.48500 * 109.46804 * 330.00110 * 12 10 8 16 16 C 1.46498 * 120.00459 * 185.30424 * 6 4 2 17 17 C 1.52994 * 109.47339 * 93.61733 * 16 6 4 18 18 C 1.53000 * 109.47155 * 184.82876 * 17 16 6 19 19 N 1.46904 * 109.47133 * 181.30762 * 18 17 16 20 20 C 1.46906 * 110.99570 * 66.04730 * 19 18 17 21 21 C 1.46899 * 110.99972 * 189.99721 * 19 18 17 22 22 C 1.53001 * 109.47448 * 120.00279 * 2 1 3 23 23 C 1.52999 * 117.49832 * 299.24639 * 22 2 1 24 24 C 1.52991 * 117.49955 * 230.62021 * 22 2 1 25 25 H 1.09004 * 109.47199 * 59.99685 * 1 2 3 26 26 H 1.08995 * 109.47080 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47381 * 299.99915 * 1 2 3 28 28 H 1.08996 * 109.46835 * 211.09353 * 7 6 4 29 29 H 1.09003 * 109.46697 * 331.08961 * 7 6 4 30 30 H 0.97008 * 119.99974 * 180.02562 * 11 10 8 31 31 H 1.09002 * 109.47038 * 213.62148 * 16 6 4 32 32 H 1.09004 * 109.46763 * 333.61372 * 16 6 4 33 33 H 1.09004 * 109.47043 * 304.82696 * 17 16 6 34 34 H 1.08993 * 109.47125 * 64.82578 * 17 16 6 35 35 H 1.08996 * 109.47149 * 301.30590 * 18 17 16 36 36 H 1.08996 * 109.47418 * 61.30980 * 18 17 16 37 37 H 1.08995 * 109.47469 * 59.99864 * 20 19 18 38 38 H 1.09003 * 109.46910 * 179.97438 * 20 19 18 39 39 H 1.09005 * 109.46992 * 299.99662 * 20 19 18 40 40 H 1.08995 * 109.47149 * 60.00227 * 21 19 18 41 41 H 1.09003 * 109.46730 * 180.02562 * 21 19 18 42 42 H 1.08998 * 109.47229 * 299.99992 * 21 19 18 43 43 H 1.09003 * 115.55631 * 84.92607 * 22 2 1 44 44 H 1.08994 * 117.49999 * 145.01879 * 23 22 2 45 45 H 1.09004 * 117.49998 * 359.97438 * 23 22 2 46 46 H 1.09004 * 117.50338 * 359.97438 * 24 22 2 47 47 H 1.09009 * 117.51661 * 214.96861 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 1.3993 -1.6324 -1.6993 6 7 3.1851 -0.3208 -1.8101 7 6 4.0087 0.7141 -1.1798 8 6 5.0112 0.0669 -0.2594 9 1 5.0759 -1.0097 -0.2028 10 6 5.8455 0.8492 0.5104 11 7 5.7670 2.1602 0.4411 12 14 7.0877 0.0470 1.6520 13 1 8.3651 -0.1632 0.9243 14 1 7.3246 0.9283 2.8235 15 1 6.5609 -1.2617 2.1155 16 6 3.6147 -0.9323 -3.0701 17 6 3.1272 -0.0795 -4.2431 18 6 3.4707 -0.7791 -5.5597 19 7 3.0306 0.0544 -6.6865 20 6 3.7967 1.3065 -6.7457 21 6 3.1257 -0.6814 -7.9543 22 6 2.0400 -0.7213 1.2492 23 6 1.6504 -0.1394 2.6095 24 6 3.0873 -0.0024 2.1019 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 4.5341 1.2790 -1.9497 29 1 3.3708 1.3871 -0.6069 30 1 6.3544 2.7106 0.9825 31 1 4.7028 -0.9927 -3.0923 32 1 3.1935 -1.9345 -3.1497 33 1 2.0474 0.0521 -4.1726 34 1 3.6148 0.8948 -4.2113 35 1 4.5483 -0.9316 -5.6197 36 1 2.9644 -1.7434 -5.6017 37 1 4.8552 1.0792 -6.8716 38 1 3.4510 1.9044 -7.5891 39 1 3.6525 1.8648 -5.8207 40 1 2.4938 -1.5683 -7.9080 41 1 2.7944 -0.0411 -8.7718 42 1 4.1600 -0.9807 -8.1240 43 1 2.1148 -1.8058 1.1684 44 1 1.4690 -0.8409 3.4237 45 1 1.0310 0.7576 2.6145 46 1 3.4133 0.9843 1.7728 47 1 3.8513 -0.6136 2.5825 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175275622.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:21 Heat of formation + Delta-G solvation = -17.054370 kcal Electronic energy + Delta-G solvation = -23573.628873 eV Core-core repulsion = 20371.055225 eV Total energy + Delta-G solvation = -3202.573648 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.45254 -37.65683 -36.61179 -35.14982 -32.87027 -31.78661 -30.92462 -27.61463 -27.35019 -26.16738 -24.25539 -22.99979 -22.34086 -21.46769 -20.71593 -19.95689 -18.01833 -16.72242 -16.40895 -15.70697 -15.47367 -14.98222 -14.85231 -14.50901 -14.40276 -14.12581 -13.68541 -13.28998 -12.75120 -12.56805 -12.39749 -12.23943 -12.10529 -11.82096 -11.74420 -11.65196 -11.41474 -11.31574 -11.17991 -11.11977 -10.92608 -10.81407 -10.66841 -10.25335 -10.18235 -10.00150 -9.75401 -9.65071 -9.27785 -8.83703 -8.45947 -8.33767 -7.65470 -6.15543 -4.19179 3.21702 3.30236 3.32515 3.46240 3.84723 4.14350 4.34798 4.52278 5.08986 5.15907 5.17531 5.25743 5.30891 5.36975 5.43268 5.56099 5.56860 5.66190 5.69815 5.72064 5.78572 5.81636 5.89244 5.91789 6.01152 6.02990 6.06434 6.15242 6.19706 6.24495 6.47510 6.54116 6.60388 6.64973 6.75738 6.77772 6.87105 7.04626 7.07147 7.08946 7.25480 7.60852 7.80510 8.10407 8.40011 8.84665 9.10671 9.46313 10.91221 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013982 B = 0.005508 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.127293 B = 5082.486993 C = 6500.183230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.076 4.076 3 H 0.096 0.904 4 C 0.526 3.474 5 O -0.576 6.576 6 N -0.594 5.594 7 C 0.237 3.763 8 C -0.519 4.519 9 H 0.059 0.941 10 C 0.070 3.930 11 N -0.893 5.893 12 Si 0.885 3.115 13 H -0.282 1.282 14 H -0.285 1.285 15 H -0.272 1.272 16 C 0.120 3.880 17 C -0.127 4.127 18 C 0.059 3.941 19 N -0.549 5.549 20 C 0.021 3.979 21 C 0.025 3.975 22 C -0.128 4.128 23 C -0.196 4.196 24 C -0.137 4.137 25 H 0.049 0.951 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.029 0.971 29 H 0.043 0.957 30 H 0.264 0.736 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.034 0.966 36 H 0.074 0.926 37 H 0.025 0.975 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.023 0.977 43 H 0.095 0.905 44 H 0.083 0.917 45 H 0.088 0.912 46 H 0.113 0.887 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.741 -1.557 -6.610 8.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.097 4.097 3 H 0.114 0.886 4 C 0.315 3.685 5 O -0.457 6.457 6 N -0.323 5.323 7 C 0.117 3.883 8 C -0.557 4.557 9 H 0.077 0.923 10 C -0.132 4.132 11 N -0.532 5.532 12 Si 0.712 3.288 13 H -0.208 1.208 14 H -0.210 1.210 15 H -0.197 1.197 16 C -0.005 4.005 17 C -0.166 4.166 18 C -0.069 4.069 19 N -0.272 5.272 20 C -0.127 4.127 21 C -0.123 4.123 22 C -0.147 4.147 23 C -0.233 4.233 24 C -0.174 4.174 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.047 0.953 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.053 0.947 36 H 0.092 0.908 37 H 0.043 0.957 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.041 0.959 43 H 0.113 0.887 44 H 0.102 0.898 45 H 0.106 0.894 46 H 0.131 0.869 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.449 -1.726 -6.707 8.812 hybrid contribution 1.880 -0.510 0.525 2.018 sum -3.568 -2.236 -6.182 7.480 Atomic orbital electron populations 1.21597 0.93741 1.02425 1.00892 1.20817 0.96067 1.00607 0.92229 0.88648 1.20395 0.80461 0.83153 0.84528 1.90564 1.58578 1.30476 1.66129 1.48186 1.21575 1.40461 1.22107 1.19475 0.89945 0.85795 0.93059 1.21372 1.17876 0.93403 1.23090 0.92315 1.24804 0.97029 0.94615 0.96747 1.69915 1.39015 1.03438 1.40864 0.86713 0.81831 0.79550 0.80664 1.20812 1.21045 1.19730 1.21177 0.99590 0.96691 0.82997 1.21940 1.02267 0.99635 0.92787 1.22081 0.98004 0.96500 0.90336 1.61979 1.55935 1.05896 1.03433 1.22445 0.95220 0.92177 1.02882 1.22364 0.99620 0.98731 0.91614 1.21735 1.04967 0.98413 0.89591 1.23006 1.00847 1.02719 0.96766 1.22975 0.90031 1.03310 1.01073 0.93143 0.91962 0.92463 0.95291 0.93935 0.92661 0.90862 0.90895 0.91308 0.91687 0.94732 0.90787 0.95684 0.91776 0.90695 0.91457 0.91638 0.95870 0.88716 0.89813 0.89397 0.86913 0.89841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 8.67 37.15 0.32 -1.76 16 2 C -0.08 -1.43 2.28 -91.77 -0.21 -1.64 16 3 H 0.10 1.85 5.60 -51.93 -0.29 1.56 16 4 C 0.53 11.11 6.67 -10.99 -0.07 11.03 16 5 O -0.58 -13.25 15.72 5.56 0.09 -13.16 16 6 N -0.59 -12.39 2.46 -175.06 -0.43 -12.82 16 7 C 0.24 5.40 5.09 -5.19 -0.03 5.38 16 8 C -0.52 -12.73 7.42 -34.44 -0.26 -12.98 16 9 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 10 C 0.07 1.76 4.70 -17.82 -0.08 1.67 16 11 N -0.89 -23.36 13.29 55.43 0.74 -22.62 16 12 Si 0.88 20.00 29.54 -169.99 -5.02 14.98 16 13 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 14 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 15 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 16 C 0.12 2.21 5.49 -4.05 -0.02 2.19 16 17 C -0.13 -2.06 5.49 -26.73 -0.15 -2.21 16 18 C 0.06 0.82 4.96 -3.82 -0.02 0.80 16 19 N -0.55 -7.20 5.02 -251.26 -1.26 -8.46 16 20 C 0.02 0.25 9.32 60.07 0.56 0.81 16 21 C 0.03 0.27 9.57 60.06 0.57 0.84 16 22 C -0.13 -2.36 5.12 -90.62 -0.46 -2.83 16 23 C -0.20 -3.11 9.74 -26.73 -0.26 -3.37 16 24 C -0.14 -2.61 8.25 -26.73 -0.22 -2.83 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.06 1.04 7.85 -51.93 -0.41 0.64 16 27 H 0.06 0.80 7.34 -51.93 -0.38 0.42 16 28 H 0.03 0.70 8.08 -51.93 -0.42 0.28 16 29 H 0.04 1.01 5.64 -51.93 -0.29 0.72 16 30 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 31 H 0.07 1.34 8.10 -51.93 -0.42 0.92 16 32 H 0.07 1.38 7.26 -51.93 -0.38 1.00 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.06 1.08 6.49 -51.93 -0.34 0.74 16 35 H 0.03 0.47 8.12 -51.93 -0.42 0.04 16 36 H 0.07 1.00 8.06 -51.93 -0.42 0.59 16 37 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.06 0.67 8.12 -51.93 -0.42 0.24 16 39 H 0.07 0.96 6.44 -51.93 -0.33 0.62 16 40 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 41 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 42 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.09 1.83 8.11 -51.93 -0.42 1.41 16 44 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 45 H 0.09 1.29 7.66 -51.93 -0.40 0.90 16 46 H 0.11 2.41 7.24 -51.93 -0.38 2.03 16 47 H 0.08 1.63 8.14 -51.92 -0.42 1.20 16 LS Contribution 371.45 15.07 5.60 5.60 Total: -1.00 -27.14 371.45 -9.26 -36.40 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -8.64 Total: 4.98 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -0.32 Total: -4.90 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: -0.95 Total: -43.90 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: 0.09 Total: -13.16 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -27.14 -9.26 -36.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175275622.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.344 kcal (2) G-P(sol) polarization free energy of solvation -27.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds