Wall clock time and date at job start Tue Mar 31 2020 05:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46960 * 2 1 4 4 C 1.50707 * 109.47011 * 119.99716 * 2 1 3 5 5 O 1.21277 * 120.00144 * 33.75673 * 4 2 1 6 6 N 1.34777 * 119.99572 * 213.76622 * 4 2 1 7 7 C 1.46498 * 120.00553 * 3.56747 * 6 4 2 8 8 C 1.50698 * 109.47199 * 84.77158 * 7 6 4 9 9 H 1.08001 * 119.99682 * 359.97438 * 8 7 6 10 10 C 1.37869 * 120.00198 * 180.02562 * 8 7 6 11 11 N 1.31522 * 120.00327 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 120.00060 * 359.97438 * 10 8 7 13 13 H 1.48505 * 109.46921 * 90.00591 * 12 10 8 14 14 H 1.48500 * 109.47471 * 210.00273 * 12 10 8 15 15 H 1.48497 * 109.47344 * 330.00578 * 12 10 8 16 16 C 1.46501 * 119.99483 * 183.57215 * 6 4 2 17 17 C 1.53005 * 109.47157 * 89.99574 * 16 6 4 18 18 C 1.52992 * 109.47377 * 179.97438 * 17 16 6 19 19 N 1.46901 * 109.47330 * 180.02562 * 18 17 16 20 20 C 1.46902 * 110.99865 * 170.00029 * 19 18 17 21 21 C 1.46901 * 110.99485 * 293.94957 * 19 18 17 22 22 C 1.52991 * 109.47336 * 239.99938 * 2 1 3 23 23 C 1.52999 * 117.50108 * 59.20926 * 22 2 1 24 24 C 1.53006 * 60.03039 * 107.48239 * 23 22 2 25 25 H 1.09001 * 109.46996 * 300.00150 * 1 2 3 26 26 H 1.08995 * 109.46758 * 60.00812 * 1 2 3 27 27 H 1.09000 * 109.46506 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47339 * 204.77579 * 7 6 4 29 29 H 1.09004 * 109.46928 * 324.77534 * 7 6 4 30 30 H 0.96996 * 119.99904 * 179.97438 * 11 10 8 31 31 H 1.08996 * 109.47029 * 209.99403 * 16 6 4 32 32 H 1.08995 * 109.47335 * 329.99580 * 16 6 4 33 33 H 1.09003 * 109.47351 * 300.00055 * 17 16 6 34 34 H 1.09004 * 109.46741 * 59.99796 * 17 16 6 35 35 H 1.09008 * 109.47438 * 300.00140 * 18 17 16 36 36 H 1.09008 * 109.47249 * 59.99758 * 18 17 16 37 37 H 1.08999 * 109.47136 * 60.00146 * 20 19 18 38 38 H 1.09002 * 109.46968 * 179.97438 * 20 19 18 39 39 H 1.08998 * 109.47121 * 299.99938 * 20 19 18 40 40 H 1.09000 * 109.47061 * 60.00499 * 21 19 18 41 41 H 1.09005 * 109.46815 * 179.97438 * 21 19 18 42 42 H 1.08997 * 109.47609 * 299.99781 * 21 19 18 43 43 H 1.09005 * 115.56019 * 273.52191 * 22 2 1 44 44 H 1.09003 * 117.49530 * 214.97620 * 23 22 2 45 45 H 1.08995 * 117.49586 * 359.97438 * 23 22 2 46 46 H 1.08999 * 117.49962 * 107.50893 * 24 23 22 47 47 H 1.08997 * 117.49171 * 252.52112 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2306 5 8 1.4112 -1.6472 1.6860 6 7 3.1718 -0.3044 1.8250 7 6 3.8805 0.8751 1.3222 8 6 3.2841 2.1173 1.9322 9 1 2.4595 2.0363 2.6249 10 6 3.7906 3.3573 1.6053 11 7 3.2705 4.4414 2.1381 12 14 5.2165 3.4974 0.4068 13 1 4.6902 3.6231 -0.9762 14 1 6.0265 4.6969 0.7390 15 1 6.0664 2.2836 0.5044 16 6 3.7018 -1.0428 2.9740 17 6 4.6499 -2.1386 2.4827 18 6 5.2039 -2.9093 3.6826 19 7 6.1147 -3.9610 3.2110 20 6 6.8464 -4.5655 4.3323 21 6 5.3878 -4.9823 2.4451 22 6 2.0401 -0.7212 -1.2491 23 6 1.6206 -0.1604 -2.6095 24 6 3.0606 0.0133 -2.1222 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 4.9345 0.8079 1.5915 29 1 3.7849 0.9212 0.2373 30 1 3.6272 5.3137 1.9084 31 1 4.2442 -0.3588 3.6266 32 1 2.8783 -1.4956 3.5261 33 1 4.1076 -2.8227 1.8300 34 1 5.4735 -1.6857 1.9305 35 1 5.7465 -2.2250 4.3350 36 1 4.3806 -3.3621 4.2352 37 1 6.1375 -5.0057 5.0335 38 1 7.5131 -5.3410 3.9551 39 1 7.4312 -3.7986 4.8401 40 1 4.9123 -4.5183 1.5809 41 1 6.0858 -5.7485 2.1075 42 1 4.6262 -5.4376 3.0780 43 1 2.1399 -1.8030 -1.1598 44 1 1.4446 -0.8733 -3.4151 45 1 0.9810 0.7221 -2.6144 46 1 3.8317 -0.5851 -2.6073 47 1 3.3680 1.0102 -1.8063 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175275645.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:24 Heat of formation + Delta-G solvation = -17.374232 kcal Electronic energy + Delta-G solvation = -23526.384682 eV Core-core repulsion = 20323.797163 eV Total energy + Delta-G solvation = -3202.587518 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.59554 -37.73867 -36.92461 -35.25411 -32.91448 -31.86329 -31.04788 -28.01000 -27.64276 -26.26529 -24.39792 -22.62854 -22.44509 -22.02061 -20.74929 -20.16340 -18.06604 -17.02784 -16.74573 -15.86482 -15.54027 -15.17389 -14.85481 -14.61489 -14.50806 -14.11642 -13.79496 -13.44948 -12.99159 -12.67359 -12.49860 -12.43549 -12.19699 -12.05920 -11.85902 -11.72304 -11.56865 -11.48071 -11.32476 -11.27607 -11.06874 -10.79489 -10.72512 -10.36143 -10.28622 -10.20315 -10.13732 -9.67548 -9.61082 -8.90509 -8.71902 -8.39955 -7.71577 -6.21772 -4.23325 3.16310 3.25736 3.26949 3.35360 3.75431 4.01659 4.09147 4.26227 4.95175 5.05869 5.08612 5.09657 5.14838 5.18503 5.23622 5.33197 5.40788 5.51057 5.59345 5.64356 5.69767 5.74877 5.76923 5.83698 5.84606 5.88142 5.94522 5.96054 6.12193 6.15854 6.18683 6.36185 6.41916 6.43808 6.48716 6.57368 6.60331 6.72363 6.78892 6.98717 7.01169 7.40243 7.45005 8.17192 8.42174 8.83676 8.99389 9.37818 10.90874 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.011798 B = 0.005959 C = 0.004767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.681332 B = 4697.933989 C = 5872.495684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.087 4.087 3 H 0.113 0.887 4 C 0.531 3.469 5 O -0.572 6.572 6 N -0.588 5.588 7 C 0.207 3.793 8 C -0.541 4.541 9 H 0.078 0.922 10 C 0.077 3.923 11 N -0.891 5.891 12 Si 0.866 3.134 13 H -0.272 1.272 14 H -0.283 1.283 15 H -0.262 1.262 16 C 0.120 3.880 17 C -0.128 4.128 18 C 0.058 3.942 19 N -0.548 5.548 20 C 0.025 3.975 21 C 0.022 3.978 22 C -0.135 4.135 23 C -0.175 4.175 24 C -0.181 4.181 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.266 0.734 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.035 0.965 37 H 0.023 0.977 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.024 0.976 43 H 0.101 0.899 44 H 0.091 0.909 45 H 0.096 0.904 46 H 0.091 0.909 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.291 -12.909 -3.527 13.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.108 4.108 3 H 0.131 0.869 4 C 0.320 3.680 5 O -0.453 6.453 6 N -0.317 5.317 7 C 0.086 3.914 8 C -0.579 4.579 9 H 0.096 0.904 10 C -0.126 4.126 11 N -0.528 5.528 12 Si 0.693 3.307 13 H -0.197 1.197 14 H -0.209 1.209 15 H -0.187 1.187 16 C -0.004 4.004 17 C -0.168 4.168 18 C -0.070 4.070 19 N -0.272 5.272 20 C -0.124 4.124 21 C -0.126 4.126 22 C -0.154 4.154 23 C -0.212 4.212 24 C -0.218 4.218 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.053 0.947 37 H 0.042 0.958 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.043 0.957 43 H 0.119 0.881 44 H 0.109 0.891 45 H 0.114 0.886 46 H 0.109 0.891 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.354 -12.949 -3.581 13.847 hybrid contribution 0.309 0.016 -0.003 0.310 sum 3.663 -12.934 -3.584 13.912 Atomic orbital electron populations 1.21543 0.93139 1.02104 1.01550 1.20937 0.97196 1.01606 0.91026 0.86922 1.20348 0.79877 0.82981 0.84812 1.90567 1.57599 1.30759 1.66395 1.47868 1.24220 1.28830 1.30814 1.19865 0.92913 0.83448 0.95222 1.21418 1.19171 0.88993 1.28353 0.90431 1.24863 0.96407 0.95598 0.95767 1.69895 1.41537 0.98095 1.43277 0.86993 0.83271 0.78484 0.81970 1.19720 1.20887 1.18672 1.21226 0.96954 0.93427 0.88835 1.21956 0.99344 0.97679 0.97771 1.22087 0.94304 0.93520 0.97102 1.61986 1.28685 1.12600 1.23923 1.22370 0.97875 0.99490 0.92620 1.22425 0.97178 0.94527 0.98486 1.22026 1.03915 0.98793 0.90626 1.22920 0.98219 1.03239 0.96811 1.23117 0.92404 1.02446 1.03836 0.92462 0.92452 0.92212 0.94829 0.94853 0.92382 0.90402 0.90888 0.91891 0.91063 0.90569 0.94712 0.95847 0.91622 0.91334 0.90927 0.91768 0.95726 0.88079 0.89101 0.88571 0.89062 0.88183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 8.67 37.16 0.32 -1.80 16 2 C -0.09 -1.60 2.13 -91.77 -0.20 -1.79 16 3 H 0.11 2.30 5.59 -51.93 -0.29 2.01 16 4 C 0.53 11.04 6.62 -10.98 -0.07 10.97 16 5 O -0.57 -12.89 15.81 5.56 0.09 -12.80 16 6 N -0.59 -12.10 2.47 -175.06 -0.43 -12.53 16 7 C 0.21 4.55 3.85 -5.20 -0.02 4.53 16 8 C -0.54 -14.15 9.24 -34.44 -0.32 -14.47 16 9 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 10 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 11 N -0.89 -25.72 13.96 55.43 0.77 -24.94 16 12 Si 0.87 19.62 27.47 -169.99 -4.67 14.96 16 13 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.26 -5.65 6.54 56.52 0.37 -5.28 16 16 C 0.12 2.16 5.41 -4.04 -0.02 2.14 16 17 C -0.13 -2.00 5.46 -26.73 -0.15 -2.15 16 18 C 0.06 0.78 4.96 -3.83 -0.02 0.76 16 19 N -0.55 -6.91 5.02 -251.25 -1.26 -8.17 16 20 C 0.02 0.25 9.57 60.07 0.57 0.83 16 21 C 0.02 0.25 9.32 60.07 0.56 0.81 16 22 C -0.13 -2.12 5.11 -90.59 -0.46 -2.58 16 23 C -0.17 -2.31 9.72 -26.73 -0.26 -2.57 16 24 C -0.18 -2.64 9.47 -26.69 -0.25 -2.89 16 25 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.06 0.83 7.24 -51.93 -0.38 0.45 16 27 H 0.06 1.00 7.85 -51.93 -0.41 0.59 16 28 H 0.03 0.74 7.09 -51.93 -0.37 0.37 16 29 H 0.03 0.71 4.32 -51.93 -0.22 0.49 16 30 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 32 H 0.07 1.36 7.37 -51.93 -0.38 0.98 16 33 H 0.06 1.04 6.55 -51.93 -0.34 0.70 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.08 0.97 8.06 -51.92 -0.42 0.55 16 36 H 0.03 0.46 8.12 -51.92 -0.42 0.04 16 37 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 38 H 0.06 0.58 8.12 -51.93 -0.42 0.16 16 39 H 0.07 0.66 8.12 -51.93 -0.42 0.23 16 40 H 0.07 0.90 6.47 -51.93 -0.34 0.56 16 41 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 42 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 43 H 0.10 1.59 8.10 -51.93 -0.42 1.17 16 44 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.10 1.25 7.55 -51.93 -0.39 0.86 16 46 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 47 H 0.10 1.61 7.18 -51.93 -0.37 1.24 16 LS Contribution 369.64 15.07 5.57 5.57 Total: -1.00 -29.53 369.64 -8.90 -38.43 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -8.56 Total: 5.73 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -0.41 Total: -6.25 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: -0.92 Total: -45.64 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.09 Total: -12.80 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -4.67 Total: 14.96 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.53 -8.90 -38.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175275645.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.060 kcal (2) G-P(sol) polarization free energy of solvation -29.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds