Wall clock time and date at job start Tue Mar 31 2020 05:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.46870 * 2 1 4 4 N 1.46500 * 109.47368 * 239.99938 * 2 1 3 5 5 C 1.34770 * 119.99955 * 84.99591 * 4 2 1 6 6 O 1.21591 * 120.00073 * 0.02562 * 5 4 2 7 7 N 1.34775 * 120.00247 * 180.02562 * 5 4 2 8 8 C 1.46499 * 120.00289 * 180.02562 * 7 5 4 9 9 C 1.53007 * 109.47080 * 180.02562 * 8 7 5 10 10 C 1.52996 * 109.46828 * 179.97438 * 9 8 7 11 11 C 1.50704 * 109.46985 * 179.97438 * 10 9 8 12 12 H 1.07997 * 119.99700 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99980 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00315 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99940 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47329 * 59.99986 * 15 13 11 17 17 H 1.48494 * 109.47359 * 180.02562 * 15 13 11 18 18 H 1.48509 * 109.46752 * 300.00157 * 15 13 11 19 19 C 1.52997 * 109.46975 * 119.99778 * 2 1 3 20 20 C 1.53002 * 109.47415 * 300.00364 * 19 2 1 21 21 C 1.53000 * 109.47233 * 180.02562 * 20 19 2 22 22 C 1.52997 * 109.47060 * 299.99657 * 21 20 19 23 23 C 1.52999 * 109.47317 * 59.99960 * 22 21 20 24 24 C 1.52997 * 109.47232 * 60.00237 * 19 2 1 25 25 H 1.09001 * 109.47372 * 299.99850 * 1 2 3 26 26 H 1.08996 * 109.47261 * 60.00389 * 1 2 3 27 27 H 1.09004 * 109.47368 * 180.02562 * 1 2 3 28 28 H 0.96997 * 120.00110 * 265.00369 * 4 2 1 29 29 H 0.97008 * 119.99679 * 0.02562 * 7 5 4 30 30 H 1.08998 * 109.46785 * 299.99244 * 8 7 5 31 31 H 1.08992 * 109.47355 * 59.99977 * 8 7 5 32 32 H 1.09003 * 109.46591 * 299.99722 * 9 8 7 33 33 H 1.08998 * 109.47164 * 59.99265 * 9 8 7 34 34 H 1.09003 * 109.47736 * 299.99545 * 10 9 8 35 35 H 1.09004 * 109.47357 * 60.00372 * 10 9 8 36 36 H 0.96999 * 120.00045 * 179.97438 * 14 13 11 37 37 H 1.09002 * 109.47497 * 180.02562 * 19 2 1 38 38 H 1.08992 * 109.47063 * 59.99950 * 20 19 2 39 39 H 1.09004 * 109.46733 * 299.99664 * 20 19 2 40 40 H 1.09002 * 109.47398 * 59.99826 * 21 20 19 41 41 H 1.09001 * 109.47194 * 180.02562 * 21 20 19 42 42 H 1.08996 * 109.47853 * 180.02562 * 22 21 20 43 43 H 1.09002 * 109.47153 * 300.00319 * 22 21 20 44 44 H 1.09000 * 109.47486 * 180.02562 * 23 22 21 45 45 H 1.09002 * 109.46716 * 60.00091 * 23 22 21 46 46 H 1.09002 * 109.47153 * 299.99992 * 24 19 2 47 47 H 1.09001 * 109.47289 * 60.00075 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1470 -0.0183 -2.3571 6 8 1.8582 1.1615 -2.4116 7 7 2.5958 -0.6537 -3.4576 8 6 2.7362 0.0772 -4.7195 9 6 3.2594 -0.8694 -5.8017 10 6 3.4054 -0.1062 -7.1197 11 6 3.9212 -1.0384 -8.1855 12 1 4.1242 -2.0719 -7.9468 13 6 4.1341 -0.5717 -9.4653 14 7 3.8864 0.6867 -9.7561 15 14 4.7729 -1.7274 -10.7867 16 1 3.8164 -2.8488 -10.9681 17 1 4.9159 -0.9864 -12.0655 18 1 6.0948 -2.2658 -10.3765 19 6 2.0399 -0.7212 1.2493 20 6 1.5299 0.0000 2.4985 21 6 2.0404 -0.7209 3.7478 22 6 1.5309 -2.1635 3.7481 23 6 2.0408 -2.8848 2.4989 24 6 1.5300 -2.1637 1.2493 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 2.2490 -1.6317 -1.1526 29 1 2.8259 -1.5951 -3.4142 30 1 1.7658 0.4718 -5.0206 31 1 3.4379 0.9006 -4.5863 32 1 4.2297 -1.2644 -5.5007 33 1 2.5574 -1.6926 -5.9347 34 1 2.4349 0.2886 -7.4205 35 1 4.1073 0.7172 -6.9869 36 1 4.0365 1.0150 -10.6564 37 1 3.1299 -0.7208 1.2496 38 1 0.4399 0.0000 2.4985 39 1 1.8932 1.0277 2.4985 40 1 3.1304 -0.7205 3.7476 41 1 1.6766 -0.2073 4.6378 42 1 1.8941 -2.6770 4.6382 43 1 0.4409 -2.1639 3.7483 44 1 1.6775 -3.9125 2.4989 45 1 3.1309 -2.8844 2.4987 46 1 0.4400 -2.1637 1.2493 47 1 1.8933 -2.6776 0.3594 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176390894.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:22 Heat of formation + Delta-G solvation = -78.612157 kcal Electronic energy + Delta-G solvation = -22096.773675 eV Core-core repulsion = 18891.530681 eV Total energy + Delta-G solvation = -3205.242994 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.27399 -38.93974 -35.81202 -34.90089 -33.30889 -32.03381 -31.13267 -30.68208 -28.73074 -26.58993 -24.43203 -23.22325 -22.83642 -21.20421 -20.69447 -20.25204 -19.44856 -18.07019 -16.57783 -16.08278 -15.58136 -15.38549 -15.03362 -14.57190 -14.55179 -14.51115 -14.31829 -13.99677 -13.79890 -12.99530 -12.70254 -12.63161 -12.45735 -12.25261 -12.12811 -11.78199 -11.71993 -11.52306 -11.27751 -11.12139 -10.87159 -10.73524 -10.69121 -10.60684 -10.45168 -10.28309 -10.01722 -9.82906 -9.41069 -9.12426 -9.11428 -8.54986 -8.35273 -5.99936 -4.03073 2.88260 3.33014 3.37734 3.39665 3.44340 4.28315 4.33100 4.34872 4.42606 4.48207 4.77095 4.87230 4.91057 5.09672 5.13461 5.14092 5.21787 5.30104 5.33875 5.35580 5.47073 5.61170 5.69226 5.71784 5.75770 5.79295 5.80764 5.85203 5.86922 5.90680 5.99954 6.05958 6.22261 6.25857 6.58182 6.59237 6.65780 6.85888 7.05746 7.14832 7.65716 7.79138 7.99014 8.22533 8.39989 8.83375 9.03431 9.60830 11.11308 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.039357 B = 0.002340 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.260962 B =11960.776657 C =12411.562129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.165 3.835 3 H 0.087 0.913 4 N -0.747 5.747 5 C 0.700 3.300 6 O -0.594 6.594 7 N -0.743 5.743 8 C 0.135 3.865 9 C -0.120 4.120 10 C 0.024 3.976 11 C -0.523 4.523 12 H 0.054 0.946 13 C 0.056 3.944 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.094 4.094 20 C -0.114 4.114 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.120 4.120 24 C -0.118 4.118 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.392 0.608 29 H 0.393 0.607 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.262 0.738 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.069 0.931 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.263 -6.542 28.125 29.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.060 3.940 3 H 0.105 0.895 4 N -0.404 5.404 5 C 0.399 3.601 6 O -0.472 6.472 7 N -0.397 5.397 8 C 0.012 3.988 9 C -0.158 4.158 10 C -0.014 4.014 11 C -0.561 4.561 12 H 0.073 0.927 13 C -0.145 4.145 14 N -0.533 5.533 15 Si 0.721 3.279 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.113 4.113 20 C -0.152 4.152 21 C -0.157 4.157 22 C -0.158 4.158 23 C -0.157 4.157 24 C -0.155 4.155 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.226 0.774 29 H 0.226 0.774 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.088 0.912 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.523 -5.284 27.889 28.918 hybrid contribution 0.592 -1.504 -0.826 1.816 sum -4.931 -6.788 27.063 28.334 Atomic orbital electron populations 1.22305 0.95761 1.02021 1.02465 1.20738 0.93798 0.96954 0.82505 0.89542 1.45287 1.72459 1.13511 1.09111 1.16051 0.78440 0.85197 0.80378 1.90909 1.57215 1.14440 1.84641 1.45397 1.70703 1.13766 1.09861 1.21489 1.01199 0.95200 0.80896 1.21886 0.99620 0.98198 0.96100 1.19025 0.97491 0.95481 0.89371 1.21168 1.44041 0.96320 0.94554 0.92725 1.25032 0.95663 0.95114 0.98689 1.69954 1.48685 1.14161 1.20463 0.86641 0.79402 0.80837 0.80990 1.20262 1.21283 1.20265 1.21431 1.00782 0.95150 0.93898 1.21603 1.01228 0.98980 0.93363 1.21527 1.00816 0.95635 0.97680 1.21539 1.00770 0.95734 0.97713 1.21541 1.00795 0.98803 0.94579 1.21669 1.01328 0.94860 0.97648 0.91693 0.91999 0.92409 0.77356 0.77439 0.92036 0.92026 0.92812 0.92816 0.96252 0.96254 0.92877 0.90618 0.91259 0.91653 0.92016 0.92009 0.92250 0.92028 0.92064 0.92017 0.91226 0.92156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 8.78 37.16 0.33 -1.27 16 2 C 0.17 1.65 2.40 -67.93 -0.16 1.49 16 3 H 0.09 1.06 7.58 -51.93 -0.39 0.67 16 4 N -0.75 -8.29 5.00 -58.68 -0.29 -8.58 16 5 C 0.70 10.94 8.53 -86.93 -0.74 10.19 16 6 O -0.59 -11.86 16.01 5.29 0.08 -11.77 16 7 N -0.74 -11.09 5.56 -65.23 -0.36 -11.45 16 8 C 0.14 2.47 5.67 -4.04 -0.02 2.45 16 9 C -0.12 -2.38 5.27 -26.73 -0.14 -2.53 16 10 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 11 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 12 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 14 N -0.89 -27.01 13.29 55.43 0.74 -26.28 16 15 Si 0.89 21.61 29.54 -169.99 -5.02 16.58 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 C -0.09 -0.68 2.18 -90.62 -0.20 -0.88 16 20 C -0.11 -0.74 4.85 -26.73 -0.13 -0.87 16 21 C -0.12 -0.69 5.92 -26.73 -0.16 -0.85 16 22 C -0.12 -0.67 5.92 -26.73 -0.16 -0.82 16 23 C -0.12 -0.69 5.93 -26.71 -0.16 -0.85 16 24 C -0.12 -0.74 4.68 -26.71 -0.13 -0.87 16 25 H 0.06 0.52 6.43 -51.93 -0.33 0.18 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.49 6.43 -51.93 -0.33 0.16 16 28 H 0.39 3.33 6.88 -40.82 -0.28 3.04 16 29 H 0.39 4.68 8.49 -40.82 -0.35 4.33 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.44 6.43 -51.93 -0.33 0.10 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 42 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.07 0.45 6.43 -51.93 -0.33 0.12 16 47 H 0.06 0.37 6.51 -51.93 -0.34 0.03 16 LS Contribution 363.74 15.07 5.48 5.48 Total: -1.00 -32.63 363.74 -10.17 -42.80 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -8.58 Total: 1.02 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -2.22 Total: -7.82 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: 0.08 Total: -46.30 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.08 Total: -11.77 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.63 -10.17 -42.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176390894.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.810 kcal (2) G-P(sol) polarization free energy of solvation -32.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds