Wall clock time and date at job start Tue Mar 31 2020 05:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 N 1.46507 * 109.46688 * 119.99896 * 2 1 3 5 5 C 1.34778 * 119.99972 * 274.99840 * 4 2 1 6 6 O 1.21590 * 120.00051 * 0.02562 * 5 4 2 7 7 N 1.34767 * 120.00002 * 180.02562 * 5 4 2 8 8 C 1.46499 * 120.00281 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.47458 * 179.97438 * 8 7 5 10 10 C 1.52996 * 109.47121 * 180.02562 * 9 8 7 11 11 C 1.50702 * 109.46823 * 180.02562 * 10 9 8 12 12 H 1.07994 * 120.00582 * 359.97438 * 11 10 9 13 13 C 1.37884 * 119.99609 * 179.97438 * 11 10 9 14 14 N 1.31506 * 120.00339 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99650 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47134 * 90.00053 * 15 13 11 17 17 H 1.48498 * 109.47301 * 210.00011 * 15 13 11 18 18 H 1.48500 * 109.47575 * 330.00016 * 15 13 11 19 19 C 1.52992 * 109.47106 * 240.00064 * 2 1 3 20 20 C 1.52997 * 109.47482 * 60.00162 * 19 2 1 21 21 C 1.53000 * 109.47060 * 180.02562 * 20 19 2 22 22 C 1.53002 * 109.47233 * 299.99657 * 21 20 19 23 23 C 1.52997 * 109.46817 * 60.00194 * 22 21 20 24 24 C 1.52999 * 109.46961 * 180.02562 * 19 2 1 25 25 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 26 26 H 1.09002 * 109.47596 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 28 28 H 0.96993 * 119.99727 * 95.00168 * 4 2 1 29 29 H 0.97001 * 120.00208 * 359.97438 * 7 5 4 30 30 H 1.08998 * 109.46780 * 300.00133 * 8 7 5 31 31 H 1.08996 * 109.47035 * 59.99682 * 8 7 5 32 32 H 1.09000 * 109.46544 * 299.99906 * 9 8 7 33 33 H 1.08998 * 109.46766 * 59.99595 * 9 8 7 34 34 H 1.09001 * 109.46762 * 299.99531 * 10 9 8 35 35 H 1.08996 * 109.47274 * 59.99795 * 10 9 8 36 36 H 0.97001 * 120.00508 * 180.02562 * 14 13 11 37 37 H 1.09002 * 109.47103 * 299.99915 * 19 2 1 38 38 H 1.09002 * 109.47153 * 59.99783 * 20 19 2 39 39 H 1.09001 * 109.46832 * 299.99974 * 20 19 2 40 40 H 1.08992 * 109.47399 * 59.99823 * 21 20 19 41 41 H 1.09004 * 109.46724 * 180.02562 * 21 20 19 42 42 H 1.08993 * 109.47662 * 180.02562 * 22 21 20 43 43 H 1.09002 * 109.47075 * 300.00932 * 22 21 20 44 44 H 1.09002 * 109.47153 * 60.00231 * 23 22 21 45 45 H 1.09001 * 109.47289 * 180.02562 * 23 22 21 46 46 H 1.09000 * 109.47486 * 59.99547 * 24 19 2 47 47 H 1.09002 * 109.46716 * 299.99630 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1470 -0.0183 2.3572 6 8 1.8574 1.1614 2.4119 7 7 2.5966 -0.6534 3.4575 8 6 2.7360 0.0773 4.7196 9 6 3.2604 -0.8690 5.8016 10 6 3.4053 -0.1060 7.1198 11 6 3.9224 -1.0379 8.1853 12 1 4.1268 -2.0710 7.9463 13 6 4.1346 -0.5713 9.4653 14 7 3.8862 0.6869 9.7563 15 14 4.7749 -1.7266 10.7862 16 1 6.2595 -1.6942 10.7949 17 1 4.2626 -1.2954 12.1117 18 1 4.3116 -3.1086 10.5022 19 6 2.0400 -0.7212 -1.2492 20 6 1.5301 0.0000 -2.4984 21 6 2.0396 -0.7217 -3.7476 22 6 3.5696 -0.7222 -3.7479 23 6 4.0795 -1.4434 -2.4987 24 6 3.5700 -0.7217 -1.2488 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 2.2489 -1.6317 1.1527 29 1 2.8272 -1.5946 3.4140 30 1 3.4365 0.9016 4.5867 31 1 1.7651 0.4706 5.0209 32 1 2.5594 -1.6930 5.9343 33 1 4.2311 -1.2626 5.5005 34 1 4.1061 0.7183 6.9873 35 1 2.4343 0.2874 7.4206 36 1 4.0358 1.0152 10.6567 37 1 1.6767 -1.7489 -1.2492 38 1 1.8934 1.0277 -2.4984 39 1 0.4401 0.0000 -2.4985 40 1 1.6759 -1.7491 -3.7474 41 1 1.6767 -0.2075 -4.6376 42 1 3.9327 -1.2359 -4.6380 43 1 3.9333 0.3053 -3.7481 44 1 3.7158 -2.4710 -2.4985 45 1 5.1695 -1.4434 -2.4986 46 1 3.9330 -1.2358 -0.3588 47 1 3.9336 0.3058 -1.2486 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176390909.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:24 Heat of formation + Delta-G solvation = -81.372177 kcal Electronic energy + Delta-G solvation = -22101.417422 eV Core-core repulsion = 18896.054745 eV Total energy + Delta-G solvation = -3205.362677 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.19314 -38.86112 -35.83854 -34.90756 -33.31133 -32.05514 -31.13251 -30.65630 -28.91701 -26.57454 -24.17892 -22.95593 -22.71075 -21.03644 -20.69509 -20.41716 -19.94977 -17.99813 -16.61154 -16.11381 -15.73756 -15.39164 -14.77911 -14.58206 -14.45697 -14.33844 -14.03793 -13.91024 -13.76939 -13.36033 -12.93178 -12.55170 -12.34625 -12.25339 -11.81034 -11.76879 -11.67710 -11.62388 -11.42025 -11.14459 -10.89109 -10.73962 -10.69492 -10.57764 -10.40615 -10.32727 -10.00766 -9.83387 -9.41333 -9.11279 -9.10523 -8.54690 -8.35766 -6.00321 -4.03329 2.88043 3.31596 3.37916 3.40743 3.44664 4.24650 4.33931 4.40298 4.45076 4.52199 4.77269 4.90559 4.95063 5.10241 5.15410 5.19851 5.24019 5.34853 5.35348 5.37532 5.49817 5.59988 5.71211 5.71569 5.76707 5.82809 5.83723 5.85039 5.90667 5.91664 6.01261 6.13468 6.21052 6.22348 6.58082 6.59218 6.65654 6.85889 7.05653 7.14950 7.65782 7.78939 7.98785 8.22839 8.39789 8.83558 9.03424 9.60633 11.10978 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035815 B = 0.002392 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.609261 B =11700.839478 C =12150.730879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.165 3.835 3 H 0.086 0.914 4 N -0.746 5.746 5 C 0.700 3.300 6 O -0.594 6.594 7 N -0.743 5.743 8 C 0.136 3.864 9 C -0.120 4.120 10 C 0.024 3.976 11 C -0.522 4.522 12 H 0.055 0.945 13 C 0.056 3.944 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.092 4.092 20 C -0.114 4.114 21 C -0.118 4.118 22 C -0.121 4.121 23 C -0.119 4.119 24 C -0.114 4.114 25 H 0.065 0.935 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.392 0.608 29 H 0.393 0.607 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.261 0.739 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.064 0.936 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.708 -5.466 -28.085 28.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.060 3.940 3 H 0.105 0.895 4 N -0.402 5.402 5 C 0.400 3.600 6 O -0.472 6.472 7 N -0.397 5.397 8 C 0.012 3.988 9 C -0.158 4.158 10 C -0.014 4.014 11 C -0.560 4.560 12 H 0.073 0.927 13 C -0.145 4.145 14 N -0.533 5.533 15 Si 0.721 3.279 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.111 4.111 20 C -0.152 4.152 21 C -0.156 4.156 22 C -0.159 4.159 23 C -0.157 4.157 24 C -0.152 4.152 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.226 0.774 29 H 0.226 0.774 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.037 0.963 35 H 0.038 0.962 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.083 0.917 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.974 -4.210 -27.852 28.447 hybrid contribution 0.579 -1.494 0.831 1.805 sum -3.394 -5.704 -27.022 27.825 Atomic orbital electron populations 1.22262 0.95727 1.01890 1.02554 1.20778 0.93550 0.97203 0.82495 0.89546 1.45210 1.72451 1.13410 1.09084 1.16032 0.78445 0.85185 0.80337 1.90910 1.57212 1.14462 1.84619 1.45392 1.70676 1.13800 1.09855 1.21486 1.01189 0.95199 0.80902 1.21883 0.99613 0.98197 0.96098 1.19029 0.97497 0.95490 0.89388 1.21206 1.43876 0.96390 0.94533 0.92672 1.25035 0.95668 0.95118 0.98703 1.69963 1.48718 1.14188 1.20394 0.86581 0.79062 0.81070 0.81188 1.20672 1.21217 1.19919 1.21438 0.95914 0.99926 0.93859 1.21604 1.00640 0.99526 0.93387 1.21522 0.95691 1.00696 0.97659 1.21551 0.95732 1.00844 0.97736 1.21545 1.00242 0.99297 0.94605 1.21583 0.94600 1.01240 0.97750 0.91639 0.92746 0.91900 0.77447 0.77430 0.92037 0.92053 0.92820 0.92815 0.96258 0.96247 0.92935 0.90818 0.91622 0.91348 0.92054 0.92037 0.92271 0.91996 0.92103 0.92073 0.91743 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.59 9.13 37.16 0.34 -1.25 16 2 C 0.17 1.64 2.16 -67.93 -0.15 1.49 16 3 H 0.09 1.06 7.58 -51.93 -0.39 0.67 16 4 N -0.75 -8.12 4.39 -58.67 -0.26 -8.38 16 5 C 0.70 10.82 8.53 -86.93 -0.74 10.08 16 6 O -0.59 -11.79 16.01 5.29 0.08 -11.70 16 7 N -0.74 -10.98 5.56 -65.23 -0.36 -11.35 16 8 C 0.14 2.47 5.67 -4.04 -0.02 2.44 16 9 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 10 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 11 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 12 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 14 N -0.89 -27.00 13.29 55.43 0.74 -26.27 16 15 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 19 C -0.09 -0.67 1.82 -90.63 -0.17 -0.83 16 20 C -0.11 -0.74 4.85 -26.73 -0.13 -0.87 16 21 C -0.12 -0.69 5.92 -26.73 -0.16 -0.84 16 22 C -0.12 -0.74 5.92 -26.73 -0.16 -0.90 16 23 C -0.12 -0.78 5.92 -26.70 -0.16 -0.94 16 24 C -0.11 -0.87 5.05 -26.70 -0.13 -1.01 16 25 H 0.06 0.52 6.43 -51.93 -0.33 0.18 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.39 3.22 8.40 -40.82 -0.34 2.87 16 29 H 0.39 4.63 8.49 -40.82 -0.35 4.28 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.41 6.43 -51.93 -0.33 0.08 16 40 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 42 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.06 0.52 7.44 -51.93 -0.39 0.13 16 47 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 369.12 15.07 5.56 5.56 Total: -1.00 -32.60 369.12 -10.29 -42.89 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -8.87 Total: 0.80 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: -2.17 Total: -8.14 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: 0.12 Total: -45.99 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.08 Total: -11.70 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.60 -10.29 -42.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176390909.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.479 kcal (2) G-P(sol) polarization free energy of solvation -32.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds