Wall clock time and date at job start Tue Mar 31 2020 05:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 N 1.46902 * 109.47133 * 239.99476 * 2 1 3 5 5 C 1.46896 * 110.99844 * 85.00192 * 4 2 1 6 6 H 1.08997 * 109.47222 * 325.00275 * 5 4 2 7 7 C 1.53002 * 109.47320 * 84.99742 * 5 4 2 8 8 C 1.52992 * 109.47263 * 204.99893 * 5 4 2 9 9 C 1.54273 * 110.03324 * 297.90842 * 8 5 4 10 10 C 1.54963 * 104.15936 * 217.13601 * 9 8 5 11 11 C 1.54881 * 102.78001 * 37.88650 * 10 9 8 12 12 C 1.53874 * 110.03433 * 180.69340 * 8 5 4 13 13 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 14 14 O 1.21283 * 120.00262 * 120.00231 * 13 2 1 15 15 N 1.34777 * 119.99928 * 299.72137 * 13 2 1 16 16 C 1.46506 * 120.00264 * 0.28128 * 15 13 2 17 17 C 1.46499 * 120.00199 * 180.27479 * 15 13 2 18 18 C 1.50697 * 109.46949 * 90.00203 * 17 15 13 19 19 H 1.08004 * 120.00186 * 0.02562 * 18 17 15 20 20 C 1.37881 * 120.00081 * 180.02562 * 18 17 15 21 21 N 1.31519 * 120.00096 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00103 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46956 * 89.99765 * 22 20 18 24 24 H 1.48497 * 109.47226 * 210.00189 * 22 20 18 25 25 H 1.48501 * 109.47027 * 329.99834 * 22 20 18 26 26 H 1.09002 * 109.47575 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47551 * 300.00176 * 1 2 3 28 28 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 29 29 H 1.00896 * 110.99792 * 321.04975 * 4 2 1 30 30 H 1.08995 * 109.47469 * 179.97438 * 7 5 4 31 31 H 1.09005 * 109.47384 * 300.00637 * 7 5 4 32 32 H 1.09010 * 109.46919 * 59.99593 * 7 5 4 33 33 H 1.09000 * 110.02070 * 59.29771 * 8 5 4 34 34 H 1.08998 * 110.48156 * 335.78430 * 9 8 5 35 35 H 1.08997 * 110.48458 * 98.42404 * 9 8 5 36 36 H 1.08997 * 110.71886 * 279.56915 * 10 9 8 37 37 H 1.09004 * 110.92078 * 156.30023 * 10 9 8 38 38 H 1.08997 * 110.48731 * 203.40328 * 11 10 9 39 39 H 1.09002 * 110.60114 * 80.81390 * 11 10 9 40 40 H 1.09004 * 110.03113 * 238.56760 * 12 8 5 41 41 H 1.09001 * 110.03142 * 359.97438 * 12 8 5 42 42 H 1.08998 * 109.46921 * 89.99095 * 16 15 13 43 43 H 1.08994 * 109.46996 * 209.99677 * 16 15 13 44 44 H 1.09001 * 109.46578 * 329.99540 * 16 15 13 45 45 H 1.09001 * 109.47567 * 210.00057 * 17 15 13 46 46 H 1.09005 * 109.47076 * 330.00563 * 17 15 13 47 47 H 0.96991 * 119.99957 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.0825 0.2224 -2.3469 6 1 1.2577 0.9328 -2.2907 7 6 3.4111 0.9807 -2.3224 8 6 1.9770 -0.5799 -3.6453 9 6 3.1680 -1.5534 -3.7631 10 6 3.5140 -1.5480 -5.2736 11 6 3.2973 -0.0664 -5.6694 12 6 2.0589 0.3650 -4.8569 13 6 2.0322 -0.7104 1.2305 14 8 2.7295 -1.6965 1.1194 15 7 1.7112 -0.2466 2.4546 16 6 0.8689 0.9446 2.5890 17 6 2.2044 -0.9336 3.6508 18 6 3.5333 -0.3484 4.0541 19 1 3.9669 0.4552 3.4774 20 6 4.1956 -0.8389 5.1595 21 7 3.6679 -1.8178 5.8616 22 14 5.8425 -0.1130 5.6599 23 1 5.6211 1.0140 6.6013 24 1 6.6631 -1.1580 6.3230 25 1 6.5524 0.3821 4.4532 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.4495 -1.4980 -1.4099 30 1 3.4579 1.6593 -3.1740 31 1 3.4863 1.5523 -1.3973 32 1 4.2360 0.2703 -2.3784 33 1 1.0385 -1.1339 -3.6665 34 1 4.0137 -1.1942 -3.1768 35 1 2.8767 -2.5532 -3.4413 36 1 2.8367 -2.1986 -5.8267 37 1 4.5504 -1.8438 -5.4366 38 1 3.1008 0.0182 -6.7382 39 1 4.1633 0.5351 -5.3929 40 1 1.1604 0.2691 -5.4666 41 1 2.1733 1.3953 -4.5199 42 1 -0.1787 0.6463 2.6271 43 1 1.1301 1.4726 3.5060 44 1 1.0289 1.6010 1.7336 45 1 1.4896 -0.8062 4.4638 46 1 2.3252 -1.9954 3.4362 47 1 4.1336 -2.1626 6.6394 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184657880.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:49 Heat of formation + Delta-G solvation = -43.250563 kcal Electronic energy + Delta-G solvation = -23320.844692 eV Core-core repulsion = 20117.135091 eV Total energy + Delta-G solvation = -3203.709600 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.66563 -38.70382 -35.80516 -34.69920 -32.76210 -31.86582 -28.99882 -28.39179 -27.74074 -27.25997 -25.98718 -24.08670 -22.59084 -21.44937 -20.61396 -19.12659 -18.30508 -16.78634 -16.41127 -15.81986 -15.68968 -15.45347 -14.89138 -14.51056 -14.15939 -14.01997 -13.60995 -13.55130 -13.14403 -12.95303 -12.27738 -12.22280 -12.05360 -11.87219 -11.80040 -11.73946 -11.44457 -11.22188 -11.21061 -11.10258 -11.06579 -10.93232 -10.78823 -10.66345 -10.52309 -10.41033 -10.35414 -10.09790 -9.56001 -8.77140 -8.38719 -8.09486 -7.52949 -5.99249 -4.03558 3.33285 3.39938 3.44571 3.59177 3.80494 4.33717 4.49677 4.50366 4.58398 4.68601 5.03626 5.07677 5.12577 5.26678 5.28789 5.31167 5.35298 5.38981 5.50566 5.54760 5.58065 5.61092 5.65058 5.75095 5.77340 5.80884 5.85153 5.92778 5.96133 6.00777 6.04168 6.08492 6.19255 6.24476 6.29044 6.30814 6.58304 7.02427 7.24277 7.51378 7.55541 7.64163 7.98251 8.29934 8.54077 8.97549 9.26366 9.61700 11.08771 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022412 B = 0.003795 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.003390 B = 7375.999755 C = 7962.702076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.068 3.932 3 H 0.095 0.905 4 N -0.657 5.657 5 C 0.092 3.908 6 H 0.040 0.960 7 C -0.144 4.144 8 C -0.092 4.092 9 C -0.116 4.116 10 C -0.127 4.127 11 C -0.123 4.123 12 C -0.119 4.119 13 C 0.510 3.490 14 O -0.521 6.521 15 N -0.607 5.607 16 C 0.084 3.916 17 C 0.247 3.753 18 C -0.524 4.524 19 H 0.056 0.944 20 C 0.060 3.940 21 N -0.896 5.896 22 Si 0.897 3.103 23 H -0.281 1.281 24 H -0.285 1.285 25 H -0.274 1.274 26 H 0.060 0.940 27 H 0.079 0.921 28 H 0.056 0.944 29 H 0.344 0.656 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.067 0.933 42 H 0.045 0.955 43 H 0.071 0.929 44 H 0.055 0.945 45 H 0.030 0.970 46 H 0.043 0.957 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.151 6.558 -20.048 22.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.045 4.045 3 H 0.113 0.887 4 N -0.289 5.289 5 C -0.018 4.018 6 H 0.058 0.942 7 C -0.202 4.202 8 C -0.111 4.111 9 C -0.153 4.153 10 C -0.165 4.165 11 C -0.161 4.161 12 C -0.157 4.157 13 C 0.295 3.705 14 O -0.395 6.395 15 N -0.341 5.341 16 C -0.060 4.060 17 C 0.128 3.872 18 C -0.562 4.562 19 H 0.075 0.925 20 C -0.142 4.142 21 N -0.535 5.535 22 Si 0.725 3.275 23 H -0.207 1.207 24 H -0.211 1.211 25 H -0.199 1.199 26 H 0.079 0.921 27 H 0.098 0.902 28 H 0.075 0.925 29 H 0.164 0.836 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.063 0.937 43 H 0.090 0.910 44 H 0.074 0.926 45 H 0.048 0.952 46 H 0.061 0.939 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.071 5.973 -19.764 21.521 hybrid contribution -0.148 0.603 0.264 0.675 sum -6.219 6.577 -19.500 21.498 Atomic orbital electron populations 1.22687 0.95969 1.02973 1.03204 1.21509 0.93399 0.98604 0.91010 0.88693 1.60129 1.58007 1.08742 1.01993 1.21562 0.97338 0.93609 0.89247 0.94190 1.21944 0.97669 0.99776 1.00812 1.21916 0.99151 0.96310 0.93742 1.22462 0.98389 0.99082 0.95411 1.22534 1.01000 0.96192 0.96768 1.22336 0.98033 0.96629 0.99067 1.22210 0.98082 0.99428 0.95984 1.20169 0.81199 0.85308 0.83856 1.90657 1.36656 1.26298 1.85932 1.48131 1.50201 1.28341 1.07379 1.21738 0.93704 0.88345 1.02260 1.19238 0.94007 0.93760 0.80210 1.21456 1.04767 1.18999 1.11028 0.92526 1.24939 0.97930 0.94978 0.96320 1.69934 1.39057 1.26254 1.18297 0.86506 0.83768 0.78660 0.78551 1.20709 1.21099 1.19882 0.92104 0.90211 0.92451 0.83632 0.92684 0.92980 0.91301 0.91495 0.89981 0.91709 0.92022 0.91829 0.92208 0.91663 0.92216 0.91442 0.93705 0.91001 0.92598 0.95206 0.93934 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.28 8.78 37.16 0.33 -1.95 16 2 C 0.07 1.04 2.00 -68.86 -0.14 0.91 16 3 H 0.10 1.38 6.37 -51.93 -0.33 1.05 16 4 N -0.66 -9.48 5.22 -100.96 -0.53 -10.01 16 5 C 0.09 1.04 2.13 -67.72 -0.14 0.90 16 6 H 0.04 0.43 7.11 -51.93 -0.37 0.06 16 7 C -0.14 -1.71 8.86 37.16 0.33 -1.38 16 8 C -0.09 -0.91 2.65 -89.50 -0.24 -1.14 16 9 C -0.12 -1.25 5.88 -25.03 -0.15 -1.39 16 10 C -0.13 -1.14 6.91 -24.70 -0.17 -1.31 16 11 C -0.12 -1.01 6.83 -25.08 -0.17 -1.18 16 12 C -0.12 -1.00 5.91 -25.61 -0.15 -1.15 16 13 C 0.51 10.86 7.14 -10.98 -0.08 10.79 16 14 O -0.52 -13.60 16.01 5.55 0.09 -13.51 16 15 N -0.61 -13.09 2.86 -182.95 -0.52 -13.61 16 16 C 0.08 1.34 8.81 59.85 0.53 1.86 16 17 C 0.25 6.61 5.16 -5.20 -0.03 6.59 16 18 C -0.52 -15.21 9.39 -34.44 -0.32 -15.53 16 19 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 20 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 21 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 22 Si 0.90 22.30 29.54 -169.99 -5.02 17.28 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 26 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 27 H 0.08 0.92 4.55 -51.93 -0.24 0.68 16 28 H 0.06 0.57 7.43 -51.93 -0.39 0.18 16 29 H 0.34 4.81 8.09 -39.29 -0.32 4.49 16 30 H 0.05 0.54 6.43 -51.93 -0.33 0.20 16 31 H 0.05 0.67 7.43 -51.93 -0.39 0.29 16 32 H 0.07 0.90 5.98 -51.92 -0.31 0.59 16 33 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 34 H 0.08 1.02 5.61 -51.93 -0.29 0.73 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.55 6.28 -51.93 -0.33 0.23 16 42 H 0.04 0.61 6.97 -51.93 -0.36 0.25 16 43 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 44 H 0.06 0.74 5.99 -51.93 -0.31 0.43 16 45 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 46 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 47 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 357.16 15.07 5.38 5.38 Total: -1.00 -33.21 357.16 -8.48 -41.68 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -8.11 Total: 1.51 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: -0.50 Total: -2.34 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: -0.31 Total: -50.00 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.09 Total: -13.51 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.21 -8.48 -41.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184657880.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.569 kcal (2) G-P(sol) polarization free energy of solvation -33.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds