Wall clock time and date at job start Tue Mar 31 2020 05:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47630 * 2 1 4 4 N 1.46903 * 109.46940 * 119.99995 * 2 1 3 5 5 C 1.46891 * 110.99942 * 278.45174 * 4 2 1 6 6 H 1.09002 * 109.47369 * 29.93356 * 5 4 2 7 7 C 1.53005 * 109.47046 * 149.93198 * 5 4 2 8 8 C 1.50697 * 109.47258 * 269.92884 * 5 4 2 9 9 O 1.21280 * 119.99892 * 0.02562 * 8 5 4 10 10 N 1.34779 * 119.99879 * 179.97438 * 8 5 4 11 11 C 1.46500 * 120.00218 * 0.02562 * 10 8 5 12 12 C 1.46503 * 119.99697 * 179.97438 * 10 8 5 13 13 C 1.50702 * 109.47133 * 270.00065 * 12 10 8 14 14 H 1.07995 * 120.00015 * 0.02562 * 13 12 10 15 15 C 1.37884 * 119.99418 * 180.02562 * 13 12 10 16 16 N 1.31506 * 120.00399 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99431 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47529 * 59.99765 * 17 15 13 19 19 H 1.48497 * 109.46937 * 180.02562 * 17 15 13 20 20 H 1.48508 * 109.46897 * 299.99715 * 17 15 13 21 21 C 1.53005 * 109.47309 * 239.99652 * 2 1 3 22 22 C 1.54257 * 110.03478 * 177.16939 * 21 2 1 23 23 C 1.54894 * 104.19553 * 217.10640 * 22 21 2 24 24 C 1.54885 * 102.74775 * 37.94309 * 23 22 21 25 25 C 1.53878 * 110.02685 * 59.99942 * 21 2 1 26 26 H 1.09002 * 109.47279 * 294.18286 * 1 2 3 27 27 H 1.09000 * 109.46937 * 54.17641 * 1 2 3 28 28 H 1.08996 * 109.47362 * 174.17822 * 1 2 3 29 29 H 1.00904 * 110.99507 * 154.49650 * 4 2 1 30 30 H 1.09005 * 109.47094 * 187.45377 * 7 5 4 31 31 H 1.09006 * 109.47136 * 307.44901 * 7 5 4 32 32 H 1.08998 * 109.47077 * 67.44929 * 7 5 4 33 33 H 1.09002 * 109.47031 * 89.99876 * 11 10 8 34 34 H 1.09003 * 109.46889 * 209.99875 * 11 10 8 35 35 H 1.09001 * 109.47128 * 329.99760 * 11 10 8 36 36 H 1.09001 * 109.47194 * 30.00582 * 12 10 8 37 37 H 1.09001 * 109.46673 * 150.00561 * 12 10 8 38 38 H 0.96998 * 119.99984 * 180.02562 * 16 15 13 39 39 H 1.09003 * 110.01650 * 298.61489 * 21 2 1 40 40 H 1.08996 * 110.48484 * 335.78359 * 22 21 2 41 41 H 1.09004 * 110.48819 * 98.43143 * 22 21 2 42 42 H 1.08998 * 110.75665 * 279.62556 * 23 22 21 43 43 H 1.09003 * 110.75365 * 156.25365 * 23 22 21 44 44 H 1.08996 * 110.48876 * 203.37658 * 24 23 22 45 45 H 1.09007 * 110.60225 * 80.78827 * 24 23 22 46 46 H 1.08995 * 110.03349 * 238.56782 * 25 21 2 47 47 H 1.08996 * 110.03558 * 359.95804 * 25 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0050 0.2005 2.3657 6 1 1.2018 0.9291 2.2554 7 6 1.7764 -0.6223 3.6352 8 6 3.3256 0.9196 2.4643 9 8 4.1934 0.7093 1.6435 10 7 3.5420 1.7973 3.4640 11 6 2.4936 2.0517 4.4551 12 6 4.8261 2.4960 3.5601 13 6 5.7767 1.6862 4.4039 14 1 5.4565 0.7451 4.8259 15 6 7.0552 2.1470 4.6370 16 7 7.4449 3.2932 4.1235 17 14 8.2336 1.1429 5.6822 18 1 8.4404 -0.1875 5.0558 19 1 9.5347 1.8518 5.7807 20 1 7.6623 0.9667 7.0416 21 6 2.0400 -0.7213 -1.2492 22 6 3.5808 -0.6672 -1.2986 23 6 3.9068 -0.4941 -2.8029 24 6 2.7855 0.4578 -3.2883 25 6 1.5342 -0.0060 -2.5142 26 1 -0.3634 0.4210 0.9375 27 1 -0.3633 0.6015 -0.8333 28 1 -0.3634 -1.0223 -0.1042 29 1 2.9417 -1.0725 1.0464 30 1 1.6335 0.0487 4.4823 31 1 0.8896 -1.2440 3.5106 32 1 2.6430 -1.2579 3.8173 33 1 2.6035 1.3560 5.2870 34 1 2.5815 3.0742 4.8225 35 1 1.5159 1.9143 3.9932 36 1 5.2454 2.6247 2.5622 37 1 4.6747 3.4728 4.0194 38 1 8.3444 3.6172 4.2872 39 1 1.7019 -1.7576 -1.2459 40 1 3.9511 0.1842 -0.7276 41 1 4.0076 -1.5962 -0.9203 42 1 3.8532 -1.4508 -3.3224 43 1 4.8868 -0.0356 -2.9355 44 1 2.6316 0.3499 -4.3619 45 1 3.0259 1.4917 -3.0403 46 1 0.9515 -0.6954 -3.1252 47 1 0.9248 0.8545 -2.2382 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184657898.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:50 Heat of formation + Delta-G solvation = -73.603866 kcal Electronic energy + Delta-G solvation = -23736.304627 eV Core-core repulsion = 20531.278809 eV Total energy + Delta-G solvation = -3205.025818 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.20089 -39.65238 -36.91291 -36.48832 -34.83365 -33.30102 -30.41298 -29.66577 -28.82923 -28.29756 -27.52979 -25.58596 -23.69316 -22.52870 -21.49111 -20.40348 -19.95032 -18.70812 -18.33173 -17.38408 -16.96901 -16.55874 -16.20294 -15.99063 -15.62059 -15.21010 -14.68326 -14.46557 -14.24472 -14.08692 -13.90230 -13.75593 -13.48872 -13.23691 -13.11339 -13.02296 -12.86283 -12.63688 -12.51555 -12.36366 -12.28786 -12.16810 -11.94323 -11.89699 -11.75396 -11.66762 -11.55068 -11.39620 -11.13982 -10.69416 -10.65984 -9.48959 -9.43052 -8.24920 -6.39902 1.33957 1.38145 1.45505 1.78704 2.30525 2.44900 3.04440 3.11567 3.65583 3.70026 3.71761 3.85308 4.07372 4.23151 4.31428 4.36954 4.43834 4.49541 4.57738 4.67474 4.71122 4.73581 4.78414 4.82820 4.86873 4.87994 4.92365 4.97923 5.01409 5.05788 5.07738 5.14040 5.17655 5.24101 5.30783 5.35476 5.47294 5.48388 5.52024 5.57074 5.81224 6.02759 6.03532 6.29830 6.66849 6.77409 7.25350 7.44207 8.81924 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018038 B = 0.004672 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.867584 B = 5991.427780 C = 6855.311096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.087 3.913 3 H 0.014 0.986 4 N -0.657 5.657 5 C 0.077 3.923 6 H 0.116 0.884 7 C -0.136 4.136 8 C 0.467 3.533 9 O -0.590 6.590 10 N -0.606 5.606 11 C 0.077 3.923 12 C 0.260 3.740 13 C -0.541 4.541 14 H 0.052 0.948 15 C 0.008 3.992 16 N -0.929 5.929 17 Si 0.967 3.033 18 H -0.279 1.279 19 H -0.278 1.278 20 H -0.259 1.259 21 C -0.083 4.083 22 C -0.130 4.130 23 C -0.123 4.123 24 C -0.124 4.124 25 C -0.112 4.112 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.341 0.659 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.035 0.965 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.098 0.902 36 H -0.007 1.007 37 H 0.021 0.979 38 H 0.267 0.733 39 H 0.085 0.915 40 H 0.041 0.959 41 H 0.054 0.946 42 H 0.080 0.920 43 H 0.052 0.948 44 H 0.082 0.918 45 H 0.048 0.952 46 H 0.084 0.916 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.444 -7.137 -7.988 20.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.022 4.022 3 H 0.032 0.968 4 N -0.289 5.289 5 C -0.037 4.037 6 H 0.134 0.866 7 C -0.194 4.194 8 C 0.254 3.746 9 O -0.472 6.472 10 N -0.337 5.337 11 C -0.065 4.065 12 C 0.139 3.861 13 C -0.580 4.580 14 H 0.070 0.930 15 C -0.191 4.191 16 N -0.569 5.569 17 Si 0.791 3.209 18 H -0.204 1.204 19 H -0.203 1.203 20 H -0.183 1.183 21 C -0.102 4.102 22 C -0.168 4.168 23 C -0.160 4.160 24 C -0.162 4.162 25 C -0.150 4.150 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.162 0.838 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.054 0.946 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.117 0.883 36 H 0.011 0.989 37 H 0.039 0.961 38 H 0.076 0.924 39 H 0.103 0.897 40 H 0.060 0.940 41 H 0.072 0.928 42 H 0.099 0.901 43 H 0.071 0.929 44 H 0.101 0.899 45 H 0.067 0.933 46 H 0.103 0.897 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.479 -7.385 -8.252 20.691 hybrid contribution 2.301 0.628 0.421 2.422 sum -15.178 -6.757 -7.830 18.367 Atomic orbital electron populations 1.21823 0.92392 1.02880 1.01962 1.21708 0.96795 0.94478 0.89267 0.96822 1.61106 1.31400 1.33047 1.03314 1.21763 0.92355 0.94922 0.94691 0.86647 1.21914 1.02617 1.00268 0.94597 1.22491 0.91624 0.79823 0.80620 1.90608 1.48235 1.65357 1.42958 1.48178 1.16221 1.41814 1.27479 1.22100 0.90195 1.02216 0.91982 1.18739 0.80700 0.91605 0.95100 1.21645 0.98284 1.06360 1.31662 0.92954 1.25857 0.99728 0.96214 0.97302 1.70042 1.19668 1.21293 1.45902 0.85483 0.77842 0.78249 0.79335 1.20447 1.20276 1.18335 1.21869 0.93954 1.00273 0.94098 1.22459 0.96414 1.00724 0.97160 1.22482 0.98390 1.00238 0.94915 1.22366 0.95004 0.98360 1.00470 1.22206 0.97391 1.00382 0.95033 0.92471 0.91187 0.91311 0.83831 0.89532 0.88870 0.94566 0.91725 0.91269 0.88337 0.98863 0.96086 0.92413 0.89671 0.93993 0.92754 0.90094 0.92942 0.89915 0.93294 0.89741 0.91251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 9.02 71.98 0.65 -1.86 16 2 C 0.09 2.25 1.77 44.91 0.08 2.33 16 3 H 0.01 0.44 7.83 -2.39 -0.02 0.42 16 4 N -0.66 -19.03 5.93 -473.32 -2.80 -21.83 16 5 C 0.08 2.26 1.96 44.17 0.09 2.34 16 6 H 0.12 2.87 6.13 -2.39 -0.01 2.85 16 7 C -0.14 -3.37 9.08 71.98 0.65 -2.71 16 8 C 0.47 19.60 6.99 87.66 0.61 20.22 16 9 O -0.59 -30.34 14.12 -3.03 -0.04 -30.39 16 10 N -0.61 -26.01 2.86 -851.11 -2.43 -28.44 16 11 C 0.08 2.31 8.83 127.77 1.13 3.43 16 12 C 0.26 14.35 5.20 85.63 0.45 14.79 16 13 C -0.54 -31.72 9.39 25.60 0.24 -31.48 16 14 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 15 C 0.01 0.46 5.46 84.66 0.46 0.92 16 16 N -0.93 -57.13 13.29 21.45 0.28 -56.84 16 17 Si 0.97 45.56 29.54 68.60 2.03 47.59 16 18 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 20 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 21 C -0.08 -1.98 2.66 -10.07 -0.03 -2.00 16 22 C -0.13 -3.84 5.19 31.67 0.16 -3.68 16 23 C -0.12 -2.99 6.91 31.89 0.22 -2.77 16 24 C -0.12 -2.63 6.83 31.67 0.22 -2.42 16 25 C -0.11 -2.17 5.97 31.32 0.19 -1.98 16 26 H 0.06 1.03 7.18 -2.39 -0.02 1.01 16 27 H 0.07 1.12 6.66 -2.39 -0.02 1.11 16 28 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.34 11.80 6.12 -89.69 -0.55 11.25 16 30 H 0.09 1.86 4.77 -2.38 -0.01 1.85 16 31 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 32 H 0.04 1.06 8.13 -2.39 -0.02 1.04 16 33 H 0.06 1.82 7.12 -2.39 -0.02 1.80 16 34 H 0.07 2.02 7.89 -2.39 -0.02 2.01 16 35 H 0.10 2.12 5.92 -2.39 -0.01 2.11 16 36 H -0.01 -0.43 7.42 -2.39 -0.02 -0.45 16 37 H 0.02 1.18 7.89 -2.39 -0.02 1.16 16 38 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 39 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.04 1.61 6.64 -2.39 -0.02 1.59 16 41 H 0.05 1.64 8.09 -2.38 -0.02 1.62 16 42 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 46 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 47 H 0.07 1.30 6.34 -2.39 -0.02 1.28 16 Total: -1.00 -72.47 357.69 2.54 -69.93 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: 0.39 Total: 24.84 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: 5.12 Total: -4.85 kcal Atomic # 7 Polarization: -102.17 SS G_CDS: -4.95 Total: -107.12 kcal Atomic # 8 Polarization: -30.34 SS G_CDS: -0.04 Total: -30.39 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -72.47 2.54 -69.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184657898.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.676 kcal (2) G-P(sol) polarization free energy of solvation -72.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds