Wall clock time and date at job start Tue Mar 31 2020 05:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46944 * 2 1 4 4 N 1.46897 * 109.47327 * 120.00192 * 2 1 3 5 5 C 1.46898 * 110.99943 * 277.13142 * 4 2 1 6 6 H 1.09009 * 109.47286 * 29.94114 * 5 4 2 7 7 C 1.53000 * 109.47486 * 149.93946 * 5 4 2 8 8 C 1.52998 * 109.47541 * 269.94120 * 5 4 2 9 9 C 1.54269 * 110.03216 * 297.91157 * 8 5 4 10 10 C 1.54965 * 104.16128 * 217.13599 * 9 8 5 11 11 C 1.54893 * 102.77775 * 37.88055 * 10 9 8 12 12 C 1.53875 * 110.03594 * 180.69257 * 8 5 4 13 13 C 1.50697 * 109.47302 * 240.00518 * 2 1 3 14 14 O 1.21284 * 119.99718 * 240.00161 * 13 2 1 15 15 N 1.34775 * 120.00386 * 59.99175 * 13 2 1 16 16 C 1.46501 * 119.99764 * 0.02562 * 15 13 2 17 17 C 1.46493 * 120.00518 * 180.02562 * 15 13 2 18 18 C 1.50701 * 109.47420 * 270.00535 * 17 15 13 19 19 H 1.08000 * 120.00034 * 359.97438 * 18 17 15 20 20 C 1.37874 * 120.00012 * 179.97438 * 18 17 15 21 21 N 1.31515 * 120.00555 * 0.02562 * 20 18 17 22 22 Si 1.86811 * 119.99991 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46666 * 60.00625 * 22 20 18 24 24 H 1.48494 * 109.47051 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.46894 * 300.00555 * 22 20 18 26 26 H 1.09000 * 109.46656 * 172.76016 * 1 2 3 27 27 H 1.08999 * 109.46988 * 292.75695 * 1 2 3 28 28 H 1.08991 * 109.47209 * 52.75857 * 1 2 3 29 29 H 1.00900 * 110.99982 * 41.08541 * 4 2 1 30 30 H 1.09004 * 109.47030 * 294.22712 * 7 5 4 31 31 H 1.09005 * 109.47050 * 54.21824 * 7 5 4 32 32 H 1.08996 * 109.47862 * 174.22464 * 7 5 4 33 33 H 1.09001 * 110.01968 * 59.29302 * 8 5 4 34 34 H 1.09003 * 110.48715 * 335.77629 * 9 8 5 35 35 H 1.08997 * 110.49376 * 98.42380 * 9 8 5 36 36 H 1.09000 * 110.71688 * 279.57216 * 10 9 8 37 37 H 1.08993 * 110.92797 * 156.29443 * 10 9 8 38 38 H 1.08999 * 110.48933 * 203.40409 * 11 10 9 39 39 H 1.09001 * 110.59571 * 80.82053 * 11 10 9 40 40 H 1.09004 * 110.02983 * 238.56943 * 12 8 5 41 41 H 1.08999 * 110.03190 * 359.94778 * 12 8 5 42 42 H 1.09001 * 109.47177 * 269.99611 * 16 15 13 43 43 H 1.09002 * 109.47178 * 29.99695 * 16 15 13 44 44 H 1.09000 * 109.47398 * 149.99335 * 16 15 13 45 45 H 1.09004 * 109.46951 * 30.00382 * 17 15 13 46 46 H 1.09001 * 109.47777 * 150.00079 * 17 15 13 47 47 H 0.96991 * 120.00450 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0347 0.2094 2.3588 6 1 1.2440 0.9521 2.2516 7 6 1.8049 -0.5992 3.6371 8 6 3.3898 0.9152 2.4386 9 6 4.5142 -0.1212 2.6430 10 6 5.5086 0.5823 3.6009 11 6 4.5705 1.3508 4.5646 12 6 3.4258 1.8510 3.6595 13 6 2.0324 -0.7103 -1.2305 14 8 2.7297 -1.6964 -1.1192 15 7 1.7068 -0.2499 -2.4546 16 6 0.8648 0.9415 -2.5890 17 6 2.1946 -0.9406 -3.6508 18 6 3.5223 -0.3576 -4.0612 19 1 3.9588 0.4473 -3.4885 20 6 4.1797 -0.8518 -5.1678 21 7 3.6480 -1.8317 -5.8655 22 14 5.8252 -0.1287 -5.6770 23 1 6.8035 -0.2989 -4.5728 24 1 6.3197 -0.8290 -6.8894 25 1 5.6599 1.3170 -5.9736 26 1 -0.3633 -1.0195 -0.1295 27 1 -0.3633 0.3975 0.9477 28 1 -0.3633 0.6219 -0.8180 29 1 1.4709 -1.5174 1.3900 30 1 0.7987 -1.0184 3.6259 31 1 2.5344 -1.4073 3.6920 32 1 1.9177 0.0516 4.5041 33 1 3.5684 1.4844 1.5263 34 1 4.1189 -1.0273 3.1021 35 1 4.9969 -0.3528 1.6936 36 1 6.1490 1.2732 3.0526 37 1 6.1075 -0.1478 4.1452 38 1 5.0948 2.1926 5.0169 39 1 4.1838 0.6846 5.3357 40 1 3.6225 2.8744 3.3398 41 1 2.4775 1.8031 4.1947 42 1 -0.1833 0.6438 -2.6222 43 1 1.0286 1.6002 -1.7361 44 1 1.1226 1.4668 -3.5085 45 1 2.3154 -2.0020 -3.4335 46 1 1.4766 -0.8151 -4.4612 47 1 4.1103 -2.1791 -6.6442 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184657915.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:53 Heat of formation + Delta-G solvation = -44.171623 kcal Electronic energy + Delta-G solvation = -23508.784666 eV Core-core repulsion = 20305.035125 eV Total energy + Delta-G solvation = -3203.749540 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.63037 -38.61310 -35.79216 -34.69829 -32.78698 -31.91927 -28.86623 -28.35521 -27.72154 -27.23467 -25.95946 -23.95180 -22.54481 -21.73272 -20.59860 -18.70300 -18.39204 -16.67841 -16.37189 -15.77182 -15.70975 -15.29331 -14.93275 -14.54418 -14.22350 -13.96148 -13.84140 -13.47157 -13.12472 -12.88237 -12.31263 -12.15487 -11.95083 -11.91373 -11.85207 -11.71941 -11.33831 -11.23852 -11.14809 -11.08860 -10.93425 -10.85289 -10.79210 -10.65740 -10.50382 -10.49770 -10.13033 -10.09926 -9.57643 -8.75848 -8.38197 -8.09971 -7.53169 -5.98985 -4.03410 3.35403 3.39651 3.42817 3.58826 3.81236 4.36168 4.50808 4.65667 4.69342 4.79717 5.02388 5.05156 5.14032 5.24911 5.25973 5.31004 5.35594 5.49300 5.53935 5.61563 5.64399 5.68099 5.72179 5.76827 5.78250 5.84265 5.90269 5.91720 5.96077 6.04935 6.09224 6.14306 6.20051 6.29119 6.30801 6.55584 6.60227 7.02332 7.24055 7.51142 7.55926 7.63886 7.98267 8.29960 8.53832 8.97331 9.25771 9.61815 11.09003 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017503 B = 0.004477 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.316173 B = 6252.964613 C = 7246.501824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.069 3.931 3 H 0.095 0.905 4 N -0.657 5.657 5 C 0.092 3.908 6 H 0.043 0.957 7 C -0.159 4.159 8 C -0.081 4.081 9 C -0.106 4.106 10 C -0.130 4.130 11 C -0.122 4.122 12 C -0.122 4.122 13 C 0.510 3.490 14 O -0.521 6.521 15 N -0.606 5.606 16 C 0.084 3.916 17 C 0.248 3.752 18 C -0.524 4.524 19 H 0.056 0.944 20 C 0.061 3.939 21 N -0.896 5.896 22 Si 0.897 3.103 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.277 1.277 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.345 0.655 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.044 0.956 43 H 0.055 0.945 44 H 0.071 0.929 45 H 0.042 0.958 46 H 0.030 0.970 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.065 7.771 18.988 21.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.045 4.045 3 H 0.112 0.888 4 N -0.289 5.289 5 C -0.018 4.018 6 H 0.061 0.939 7 C -0.217 4.217 8 C -0.100 4.100 9 C -0.143 4.143 10 C -0.167 4.167 11 C -0.160 4.160 12 C -0.160 4.160 13 C 0.295 3.705 14 O -0.396 6.396 15 N -0.340 5.340 16 C -0.060 4.060 17 C 0.128 3.872 18 C -0.563 4.563 19 H 0.074 0.926 20 C -0.141 4.141 21 N -0.536 5.536 22 Si 0.725 3.275 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.203 1.203 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.165 0.835 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.090 0.910 45 H 0.061 0.939 46 H 0.048 0.952 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.996 7.202 18.711 20.662 hybrid contribution -0.093 0.627 -0.307 0.704 sum -5.089 7.829 18.405 20.638 Atomic orbital electron populations 1.22671 0.96016 1.03251 1.02768 1.21512 0.93337 0.98616 0.90990 0.88754 1.60100 1.59223 1.07884 1.01677 1.21555 0.96235 0.94152 0.89865 0.93903 1.22119 1.01425 1.00914 0.97218 1.21743 0.94855 0.95820 0.97561 1.22301 0.94832 0.97712 0.99452 1.22569 0.97672 0.99069 0.97439 1.22328 0.96543 0.99393 0.97690 1.22259 0.98645 0.98847 0.96281 1.20154 0.81195 0.85308 0.83862 1.90660 1.36702 1.26288 1.85940 1.48121 1.50188 1.28308 1.07361 1.21739 0.93738 0.88325 1.02246 1.19232 0.94060 0.93679 0.80206 1.21410 1.04881 1.18946 1.11056 0.92596 1.24927 0.97872 0.94975 0.96304 1.69919 1.39066 1.26155 1.18416 0.86577 0.84071 0.78990 0.77891 1.20165 1.21199 1.20313 0.92057 0.92442 0.90412 0.83527 0.93106 0.91175 0.91659 0.91385 0.91146 0.91251 0.91925 0.92055 0.92327 0.91971 0.92235 0.91827 0.93747 0.92607 0.91019 0.93949 0.95211 0.92728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.24 8.73 37.16 0.32 -1.92 16 2 C 0.07 1.05 2.01 -68.87 -0.14 0.91 16 3 H 0.09 1.37 6.80 -51.93 -0.35 1.02 16 4 N -0.66 -9.39 5.23 -100.95 -0.53 -9.92 16 5 C 0.09 1.03 2.07 -67.71 -0.14 0.89 16 6 H 0.04 0.45 6.97 -51.92 -0.36 0.09 16 7 C -0.16 -1.49 8.53 37.16 0.32 -1.17 16 8 C -0.08 -0.95 2.92 -89.50 -0.26 -1.21 16 9 C -0.11 -1.35 5.88 -25.03 -0.15 -1.49 16 10 C -0.13 -1.39 6.91 -24.70 -0.17 -1.56 16 11 C -0.12 -1.11 6.83 -25.07 -0.17 -1.28 16 12 C -0.12 -1.16 5.84 -25.62 -0.15 -1.31 16 13 C 0.51 10.80 7.14 -10.99 -0.08 10.73 16 14 O -0.52 -13.52 16.01 5.55 0.09 -13.44 16 15 N -0.61 -13.04 2.86 -182.96 -0.52 -13.56 16 16 C 0.08 1.34 8.79 59.85 0.53 1.86 16 17 C 0.25 6.61 5.16 -5.20 -0.03 6.58 16 18 C -0.52 -15.19 9.39 -34.44 -0.32 -15.51 16 19 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 20 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 21 N -0.90 -27.09 13.29 55.43 0.74 -26.36 16 22 Si 0.90 22.29 29.54 -169.99 -5.02 17.27 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 27 H 0.06 0.57 7.27 -51.93 -0.38 0.19 16 28 H 0.08 0.87 4.76 -51.93 -0.25 0.62 16 29 H 0.35 4.78 8.07 -39.29 -0.32 4.46 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.71 6.23 -51.93 -0.32 0.39 16 32 H 0.06 0.54 6.28 -51.93 -0.33 0.21 16 33 H 0.07 0.93 7.82 -51.93 -0.41 0.52 16 34 H 0.07 0.89 5.70 -51.93 -0.30 0.59 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.54 6.31 -51.93 -0.33 0.21 16 42 H 0.04 0.61 7.11 -51.93 -0.37 0.24 16 43 H 0.06 0.74 5.93 -51.93 -0.31 0.43 16 44 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 45 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 46 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 47 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 357.96 15.07 5.39 5.39 Total: -1.00 -33.04 357.96 -8.55 -41.60 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -8.16 Total: 1.83 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -0.54 Total: -2.82 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: -0.31 Total: -49.83 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.09 Total: -13.44 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.04 -8.55 -41.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184657915.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.576 kcal (2) G-P(sol) polarization free energy of solvation -33.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds