Wall clock time and date at job start Tue Mar 31 2020 05:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.47117 * 2 1 4 4 N 1.46900 * 109.46980 * 120.00111 * 2 1 3 5 5 C 1.46901 * 110.99651 * 274.99621 * 4 2 1 6 6 H 1.08994 * 109.47114 * 35.00376 * 5 4 2 7 7 C 1.52997 * 109.47270 * 274.99939 * 5 4 2 8 8 C 1.53006 * 109.46797 * 155.00128 * 5 4 2 9 9 C 1.54262 * 110.03201 * 297.16860 * 8 5 4 10 10 C 1.54893 * 104.19365 * 217.10408 * 9 8 5 11 11 C 1.54889 * 102.74824 * 37.94591 * 10 9 8 12 12 C 1.53871 * 110.02935 * 180.02562 * 8 5 4 13 13 C 1.50701 * 109.46977 * 240.00067 * 2 1 3 14 14 O 1.21282 * 119.99841 * 245.94089 * 13 2 1 15 15 N 1.34773 * 119.99957 * 65.93776 * 13 2 1 16 16 C 1.46496 * 120.00146 * 4.61295 * 15 13 2 17 17 C 1.46509 * 119.99817 * 184.61473 * 15 13 2 18 18 C 1.50695 * 109.46888 * 90.00072 * 17 15 13 19 19 H 1.08005 * 120.00542 * 359.97438 * 18 17 15 20 20 C 1.37885 * 119.99980 * 180.02562 * 18 17 15 21 21 N 1.31510 * 119.99465 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00404 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47057 * 59.99744 * 22 20 18 24 24 H 1.48496 * 109.47296 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46786 * 300.00093 * 22 20 18 26 26 H 1.08996 * 109.47127 * 69.16422 * 1 2 3 27 27 H 1.08992 * 109.47127 * 189.16732 * 1 2 3 28 28 H 1.09002 * 109.46806 * 309.16602 * 1 2 3 29 29 H 1.00898 * 110.99554 * 151.04371 * 4 2 1 30 30 H 1.08994 * 109.47409 * 300.00256 * 7 5 4 31 31 H 1.09004 * 109.47183 * 60.00690 * 7 5 4 32 32 H 1.08999 * 109.47167 * 179.97438 * 7 5 4 33 33 H 1.09002 * 110.01212 * 58.60933 * 8 5 4 34 34 H 1.09000 * 110.48875 * 335.78080 * 9 8 5 35 35 H 1.08999 * 110.49039 * 98.42721 * 9 8 5 36 36 H 1.08999 * 110.75682 * 279.62750 * 10 9 8 37 37 H 1.09007 * 110.75447 * 156.25287 * 10 9 8 38 38 H 1.09005 * 110.48635 * 203.38109 * 11 10 9 39 39 H 1.08998 * 110.60531 * 80.78826 * 11 10 9 40 40 H 1.09002 * 110.03116 * 238.57092 * 12 8 5 41 41 H 1.08997 * 110.03709 * 359.94836 * 12 8 5 42 42 H 1.09005 * 109.46932 * 95.85007 * 16 15 13 43 43 H 1.08998 * 109.47097 * 215.84220 * 16 15 13 44 44 H 1.08991 * 109.47249 * 335.84901 * 16 15 13 45 45 H 1.08997 * 109.47059 * 210.00073 * 17 15 13 46 46 H 1.09001 * 109.46747 * 330.00138 * 17 15 13 47 47 H 0.97008 * 120.00076 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2226 2.3468 6 1 1.2577 0.9329 2.2906 7 6 3.4112 0.9809 2.3223 8 6 1.9771 -0.5797 3.6454 9 6 0.6113 -1.2934 3.7161 10 6 0.2184 -1.2141 5.2123 11 6 0.7127 0.1957 5.6212 12 6 2.0409 0.3672 4.8566 13 6 2.0324 -0.7104 -1.2305 14 8 2.6382 -1.7555 -1.1225 15 7 1.8083 -0.1844 -2.4509 16 6 1.1663 1.1263 -2.5770 17 6 2.2068 -0.9235 -3.6515 18 6 1.0692 -1.8044 -4.0997 19 1 0.1423 -1.8133 -3.5455 20 6 1.2121 -2.6000 -5.2168 21 7 2.3410 -2.5895 -5.8913 22 14 -0.1981 -3.6915 -5.7728 23 1 -1.3831 -2.8509 -6.0802 24 1 0.2059 -4.4407 -6.9896 25 1 -0.5384 -4.6500 -4.6908 26 1 -0.3633 0.3655 -0.9604 27 1 -0.3633 -1.0145 0.1637 28 1 -0.3633 0.6491 0.7968 29 1 2.9173 -1.1205 1.0286 30 1 4.2360 0.2706 2.3785 31 1 3.4863 1.5525 1.3972 32 1 3.4576 1.6602 3.1734 33 1 2.7842 -1.3102 3.6991 34 1 -0.1231 -0.7737 3.1007 35 1 0.7072 -2.3326 3.4015 36 1 0.7308 -1.9851 5.7876 37 1 -0.8620 -1.2945 5.3326 38 1 0.8826 0.2433 6.6969 39 1 -0.0045 0.9574 5.3151 40 1 2.8788 0.0959 5.4988 41 1 2.1479 1.3982 4.5194 42 1 1.9303 1.8961 -2.6863 43 1 0.5183 1.1307 -3.4535 44 1 0.5728 1.3275 -1.6853 45 1 2.4558 -0.2195 -4.4456 46 1 3.0770 -1.5401 -3.4264 47 1 2.4415 -3.1489 -6.6775 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184657935.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:56 Heat of formation + Delta-G solvation = -48.597614 kcal Electronic energy + Delta-G solvation = -23306.091199 eV Core-core repulsion = 20102.149733 eV Total energy + Delta-G solvation = -3203.941466 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.66378 -38.62046 -35.84414 -34.83441 -32.84201 -31.98882 -29.06948 -28.47110 -27.60754 -27.24743 -25.98718 -23.98636 -22.52649 -21.07704 -20.62576 -19.67889 -18.34920 -16.70847 -16.49616 -16.09391 -15.67322 -15.16822 -14.85107 -14.54659 -14.16841 -13.91896 -13.52904 -13.41598 -13.35981 -12.82340 -12.52681 -12.45710 -12.18288 -11.99959 -11.79860 -11.59824 -11.33081 -11.16899 -11.13437 -11.06206 -11.02643 -10.96006 -10.80745 -10.66528 -10.59714 -10.53838 -10.32694 -10.14170 -9.62645 -8.80802 -8.42321 -8.24937 -7.62754 -6.03205 -4.08093 3.32929 3.36900 3.37604 3.44338 3.83788 4.28028 4.46225 4.55618 4.59968 4.75031 4.97590 5.05200 5.16225 5.27103 5.30597 5.33416 5.39517 5.45526 5.54348 5.56192 5.57276 5.62171 5.65764 5.75073 5.77494 5.82471 5.91662 5.93332 5.95075 5.99359 6.07305 6.11947 6.20668 6.24507 6.36332 6.45822 6.52257 6.99096 7.22184 7.45240 7.53989 7.60496 7.93287 8.24456 8.42747 8.90602 9.09108 9.56983 11.04871 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026239 B = 0.003652 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.874089 B = 7666.055895 C = 8095.461214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.068 3.932 3 H 0.059 0.941 4 N -0.664 5.664 5 C 0.090 3.910 6 H 0.076 0.924 7 C -0.187 4.187 8 C -0.078 4.078 9 C -0.103 4.103 10 C -0.130 4.130 11 C -0.124 4.124 12 C -0.121 4.121 13 C 0.504 3.496 14 O -0.535 6.535 15 N -0.600 5.600 16 C 0.070 3.930 17 C 0.246 3.754 18 C -0.527 4.527 19 H 0.057 0.943 20 C 0.061 3.939 21 N -0.895 5.895 22 Si 0.899 3.101 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.276 1.276 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.354 0.646 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.043 0.957 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.031 0.969 46 H 0.044 0.956 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.730 10.223 19.517 22.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.045 4.045 3 H 0.076 0.924 4 N -0.298 5.298 5 C -0.020 4.020 6 H 0.094 0.906 7 C -0.246 4.246 8 C -0.097 4.097 9 C -0.141 4.141 10 C -0.167 4.167 11 C -0.162 4.162 12 C -0.160 4.160 13 C 0.289 3.711 14 O -0.412 6.412 15 N -0.332 5.332 16 C -0.074 4.074 17 C 0.126 3.874 18 C -0.566 4.566 19 H 0.075 0.925 20 C -0.141 4.141 21 N -0.534 5.534 22 Si 0.726 3.274 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.201 1.201 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.176 0.824 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.061 0.939 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.049 0.951 46 H 0.062 0.938 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.907 9.327 19.518 21.826 hybrid contribution 0.054 0.037 -0.742 0.745 sum -2.853 9.364 18.776 21.175 Atomic orbital electron populations 1.21930 0.92871 1.03368 1.01794 1.21435 0.97225 0.96153 0.89679 0.92367 1.60452 1.35255 1.31325 1.02797 1.21727 0.96349 0.93012 0.90896 0.90589 1.22603 0.98939 1.01164 1.01871 1.21705 0.98589 0.96755 0.92676 1.22227 0.96106 1.00987 0.94767 1.22562 1.00312 0.96675 0.97196 1.22340 0.97070 0.97451 0.99306 1.22249 0.97523 0.99684 0.96498 1.20315 0.80419 0.85777 0.84539 1.90653 1.41433 1.23172 1.85938 1.48089 1.58821 1.18991 1.07337 1.21939 0.97543 0.84967 1.02991 1.19275 0.96728 0.91342 0.80018 1.21403 0.99999 1.24328 1.10859 0.92462 1.24940 0.96020 0.96778 0.96364 1.69926 1.24730 1.40115 1.18667 0.86551 0.82172 0.80667 0.77999 1.20244 1.21185 1.20118 0.91013 0.91137 0.92582 0.82392 0.92320 0.92892 0.91938 0.91152 0.91476 0.91447 0.91893 0.91997 0.92244 0.91905 0.92113 0.91714 0.93865 0.90939 0.91100 0.95100 0.93820 0.92668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 8.83 37.16 0.33 -1.64 16 2 C 0.07 1.05 2.00 -68.86 -0.14 0.91 16 3 H 0.06 0.79 6.69 -51.93 -0.35 0.44 16 4 N -0.66 -9.60 5.59 -100.95 -0.56 -10.17 16 5 C 0.09 1.00 1.69 -67.71 -0.11 0.89 16 6 H 0.08 0.82 7.18 -51.93 -0.37 0.45 16 7 C -0.19 -1.90 8.89 37.16 0.33 -1.57 16 8 C -0.08 -0.80 2.71 -89.50 -0.24 -1.05 16 9 C -0.10 -1.11 6.07 -25.07 -0.15 -1.26 16 10 C -0.13 -1.16 6.91 -24.74 -0.17 -1.33 16 11 C -0.12 -1.01 6.83 -25.10 -0.17 -1.18 16 12 C -0.12 -1.03 5.91 -25.64 -0.15 -1.18 16 13 C 0.50 10.55 6.98 -10.99 -0.08 10.47 16 14 O -0.54 -13.51 15.28 5.56 0.08 -13.43 16 15 N -0.60 -12.82 2.86 -182.96 -0.52 -13.35 16 16 C 0.07 1.11 9.74 59.84 0.58 1.69 16 17 C 0.25 6.51 5.22 -5.19 -0.03 6.48 16 18 C -0.53 -15.09 9.39 -34.44 -0.32 -15.42 16 19 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 22 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 H 0.07 0.99 5.42 -51.93 -0.28 0.71 16 27 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.06 0.63 7.57 -51.93 -0.39 0.24 16 29 H 0.35 5.75 7.28 -39.29 -0.29 5.47 16 30 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 31 H 0.05 0.57 7.43 -51.93 -0.39 0.18 16 32 H 0.06 0.54 6.48 -51.93 -0.34 0.20 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.76 7.84 -51.93 -0.41 0.35 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.52 6.33 -51.93 -0.33 0.19 16 42 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.07 1.19 8.11 -51.93 -0.42 0.77 16 44 H 0.07 0.93 4.11 -51.93 -0.21 0.71 16 45 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 46 H 0.04 1.31 7.36 -51.93 -0.38 0.93 16 47 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 361.89 15.07 5.45 5.45 Total: -1.00 -31.99 361.89 -8.60 -40.59 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -8.35 Total: 2.52 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -0.42 Total: -2.51 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: -0.35 Total: -49.65 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: 0.08 Total: -13.43 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.99 -8.60 -40.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184657935.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.003 kcal (2) G-P(sol) polarization free energy of solvation -31.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds