Wall clock time and date at job start Tue Mar 31 2020 05:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.47117 * 2 1 4 4 N 1.46900 * 109.46980 * 120.00111 * 2 1 3 5 5 C 1.46901 * 110.99651 * 274.99621 * 4 2 1 6 6 H 1.08994 * 109.47114 * 35.00376 * 5 4 2 7 7 C 1.52997 * 109.47270 * 274.99939 * 5 4 2 8 8 C 1.53006 * 109.46797 * 155.00128 * 5 4 2 9 9 C 1.54262 * 110.03201 * 297.16860 * 8 5 4 10 10 C 1.54893 * 104.19365 * 217.10408 * 9 8 5 11 11 C 1.54889 * 102.74824 * 37.94591 * 10 9 8 12 12 C 1.53871 * 110.02935 * 180.02562 * 8 5 4 13 13 C 1.50701 * 109.46977 * 240.00067 * 2 1 3 14 14 O 1.21282 * 119.99841 * 245.94089 * 13 2 1 15 15 N 1.34773 * 119.99957 * 65.93776 * 13 2 1 16 16 C 1.46496 * 120.00146 * 4.61295 * 15 13 2 17 17 C 1.46509 * 119.99817 * 184.61473 * 15 13 2 18 18 C 1.50695 * 109.46888 * 90.00072 * 17 15 13 19 19 H 1.08005 * 120.00542 * 359.97438 * 18 17 15 20 20 C 1.37885 * 119.99980 * 180.02562 * 18 17 15 21 21 N 1.31510 * 119.99465 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00404 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47057 * 59.99744 * 22 20 18 24 24 H 1.48496 * 109.47296 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46786 * 300.00093 * 22 20 18 26 26 H 1.08996 * 109.47127 * 69.16422 * 1 2 3 27 27 H 1.08992 * 109.47127 * 189.16732 * 1 2 3 28 28 H 1.09002 * 109.46806 * 309.16602 * 1 2 3 29 29 H 1.00898 * 110.99554 * 151.04371 * 4 2 1 30 30 H 1.08994 * 109.47409 * 300.00256 * 7 5 4 31 31 H 1.09004 * 109.47183 * 60.00690 * 7 5 4 32 32 H 1.08999 * 109.47167 * 179.97438 * 7 5 4 33 33 H 1.09002 * 110.01212 * 58.60933 * 8 5 4 34 34 H 1.09000 * 110.48875 * 335.78080 * 9 8 5 35 35 H 1.08999 * 110.49039 * 98.42721 * 9 8 5 36 36 H 1.08999 * 110.75682 * 279.62750 * 10 9 8 37 37 H 1.09007 * 110.75447 * 156.25287 * 10 9 8 38 38 H 1.09005 * 110.48635 * 203.38109 * 11 10 9 39 39 H 1.08998 * 110.60531 * 80.78826 * 11 10 9 40 40 H 1.09002 * 110.03116 * 238.57092 * 12 8 5 41 41 H 1.08997 * 110.03709 * 359.94836 * 12 8 5 42 42 H 1.09005 * 109.46932 * 95.85007 * 16 15 13 43 43 H 1.08998 * 109.47097 * 215.84220 * 16 15 13 44 44 H 1.08991 * 109.47249 * 335.84901 * 16 15 13 45 45 H 1.08997 * 109.47059 * 210.00073 * 17 15 13 46 46 H 1.09001 * 109.46747 * 330.00138 * 17 15 13 47 47 H 0.97008 * 120.00076 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2226 2.3468 6 1 1.2577 0.9329 2.2906 7 6 3.4112 0.9809 2.3223 8 6 1.9771 -0.5797 3.6454 9 6 0.6113 -1.2934 3.7161 10 6 0.2184 -1.2141 5.2123 11 6 0.7127 0.1957 5.6212 12 6 2.0409 0.3672 4.8566 13 6 2.0324 -0.7104 -1.2305 14 8 2.6382 -1.7555 -1.1225 15 7 1.8083 -0.1844 -2.4509 16 6 1.1663 1.1263 -2.5770 17 6 2.2068 -0.9235 -3.6515 18 6 1.0692 -1.8044 -4.0997 19 1 0.1423 -1.8133 -3.5455 20 6 1.2121 -2.6000 -5.2168 21 7 2.3410 -2.5895 -5.8913 22 14 -0.1981 -3.6915 -5.7728 23 1 -1.3831 -2.8509 -6.0802 24 1 0.2059 -4.4407 -6.9896 25 1 -0.5384 -4.6500 -4.6908 26 1 -0.3633 0.3655 -0.9604 27 1 -0.3633 -1.0145 0.1637 28 1 -0.3633 0.6491 0.7968 29 1 2.9173 -1.1205 1.0286 30 1 4.2360 0.2706 2.3785 31 1 3.4863 1.5525 1.3972 32 1 3.4576 1.6602 3.1734 33 1 2.7842 -1.3102 3.6991 34 1 -0.1231 -0.7737 3.1007 35 1 0.7072 -2.3326 3.4015 36 1 0.7308 -1.9851 5.7876 37 1 -0.8620 -1.2945 5.3326 38 1 0.8826 0.2433 6.6969 39 1 -0.0045 0.9574 5.3151 40 1 2.8788 0.0959 5.4988 41 1 2.1479 1.3982 4.5194 42 1 1.9303 1.8961 -2.6863 43 1 0.5183 1.1307 -3.4535 44 1 0.5728 1.3275 -1.6853 45 1 2.4558 -0.2195 -4.4456 46 1 3.0770 -1.5401 -3.4264 47 1 2.4415 -3.1489 -6.6775 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184657935.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:55 Heat of formation + Delta-G solvation = -69.080322 kcal Electronic energy + Delta-G solvation = -23306.979396 eV Core-core repulsion = 20102.149733 eV Total energy + Delta-G solvation = -3204.829663 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.09311 -39.64515 -36.98644 -36.57457 -34.81429 -33.24356 -30.21948 -29.51535 -29.07191 -28.12672 -27.50048 -25.70378 -23.93968 -22.25145 -21.35817 -20.60860 -19.78890 -18.68585 -18.04693 -17.47971 -16.74742 -16.54303 -16.26036 -15.94577 -15.67183 -15.06795 -14.68924 -14.46223 -14.20712 -14.11161 -13.92678 -13.76183 -13.56285 -13.34778 -13.16539 -13.08274 -12.89635 -12.73865 -12.57758 -12.26879 -12.14904 -12.04444 -11.86092 -11.77072 -11.74456 -11.69580 -11.47312 -11.36175 -11.12903 -10.65428 -10.48507 -9.46009 -9.29912 -8.23582 -6.38771 1.35925 1.40583 1.47747 1.77923 2.27680 2.41714 3.05897 3.16143 3.63370 3.77628 3.86167 3.94886 4.10789 4.23156 4.27228 4.35575 4.41412 4.46020 4.64812 4.67965 4.71032 4.75064 4.82872 4.83600 4.88024 4.93081 4.96586 4.99240 5.00985 5.07393 5.16810 5.18501 5.21325 5.28157 5.35045 5.38664 5.52516 5.54302 5.57345 5.64424 5.81461 6.04600 6.12335 6.38356 6.68732 6.77789 7.26370 7.44747 8.83435 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026239 B = 0.003652 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.874089 B = 7666.055895 C = 8095.461214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.084 3.916 3 H 0.088 0.912 4 N -0.676 5.676 5 C 0.093 3.907 6 H 0.090 0.910 7 C -0.183 4.183 8 C -0.077 4.077 9 C -0.105 4.105 10 C -0.128 4.128 11 C -0.120 4.120 12 C -0.117 4.117 13 C 0.493 3.507 14 O -0.590 6.590 15 N -0.607 5.607 16 C 0.064 3.936 17 C 0.260 3.740 18 C -0.544 4.544 19 H 0.054 0.946 20 C 0.007 3.993 21 N -0.929 5.929 22 Si 0.968 3.032 23 H -0.258 1.258 24 H -0.278 1.278 25 H -0.278 1.278 26 H 0.074 0.926 27 H 0.047 0.953 28 H 0.092 0.908 29 H 0.341 0.659 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.084 0.916 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.043 0.957 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.106 0.894 45 H 0.023 0.977 46 H -0.004 1.004 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.583 12.198 21.092 24.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.029 4.029 3 H 0.105 0.895 4 N -0.309 5.309 5 C -0.017 4.017 6 H 0.108 0.892 7 C -0.241 4.241 8 C -0.096 4.096 9 C -0.142 4.142 10 C -0.166 4.166 11 C -0.158 4.158 12 C -0.155 4.155 13 C 0.281 3.719 14 O -0.471 6.471 15 N -0.338 5.338 16 C -0.077 4.077 17 C 0.138 3.862 18 C -0.583 4.583 19 H 0.073 0.927 20 C -0.192 4.192 21 N -0.569 5.569 22 Si 0.792 3.208 23 H -0.183 1.183 24 H -0.203 1.203 25 H -0.204 1.204 26 H 0.093 0.907 27 H 0.066 0.934 28 H 0.111 0.889 29 H 0.161 0.839 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.102 0.898 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.124 0.876 45 H 0.041 0.959 46 H 0.014 0.986 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.790 11.362 21.113 24.449 hybrid contribution 0.682 -0.577 -1.209 1.503 sum -4.107 10.785 19.904 23.007 Atomic orbital electron populations 1.21928 0.91323 1.02911 1.03297 1.21403 0.98068 0.96502 0.86955 0.89477 1.60524 1.34577 1.32532 1.03311 1.21826 0.97372 0.92756 0.89711 0.89225 1.22556 0.97891 1.01084 1.02619 1.21687 0.97742 0.96876 0.93313 1.22198 0.96388 0.99570 0.96089 1.22549 1.00729 0.97566 0.95707 1.22336 0.96786 0.96690 0.99977 1.22220 0.98068 0.99612 0.95558 1.21409 0.79245 0.85374 0.85841 1.90618 1.43771 1.25861 1.86861 1.48105 1.59062 1.20542 1.06108 1.22241 0.98353 0.82577 1.04570 1.18734 0.94699 0.90910 0.81838 1.21683 1.00307 1.25124 1.11164 0.92731 1.25882 0.98781 0.98130 0.96400 1.70050 1.26750 1.40956 1.19128 0.85458 0.79217 0.78643 0.77453 1.18258 1.20307 1.20381 0.90740 0.93413 0.88924 0.83891 0.93353 0.93248 0.89768 0.92654 0.91877 0.93763 0.91981 0.91438 0.91074 0.91221 0.91641 0.90576 0.91488 0.91468 0.87558 0.95946 0.98573 0.92374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 8.83 71.98 0.64 -2.83 16 2 C 0.08 2.44 2.00 44.17 0.09 2.53 16 3 H 0.09 2.07 6.69 -2.39 -0.02 2.05 16 4 N -0.68 -19.23 5.59 -473.30 -2.65 -21.88 16 5 C 0.09 1.87 1.69 44.92 0.08 1.94 16 6 H 0.09 1.60 7.18 -2.39 -0.02 1.58 16 7 C -0.18 -3.33 8.89 71.98 0.64 -2.69 16 8 C -0.08 -1.48 2.71 -10.07 -0.03 -1.51 16 9 C -0.10 -2.15 6.07 31.67 0.19 -1.96 16 10 C -0.13 -2.07 6.91 31.89 0.22 -1.85 16 11 C -0.12 -1.59 6.83 31.65 0.22 -1.38 16 12 C -0.12 -1.66 5.91 31.30 0.18 -1.47 16 13 C 0.49 20.98 6.98 87.66 0.61 21.59 16 14 O -0.59 -31.37 15.28 -3.04 -0.05 -31.41 16 15 N -0.61 -26.20 2.86 -851.14 -2.43 -28.64 16 16 C 0.06 1.94 9.74 127.77 1.24 3.18 16 17 C 0.26 14.35 5.22 85.63 0.45 14.79 16 18 C -0.54 -31.92 9.39 25.60 0.24 -31.68 16 19 H 0.05 3.15 7.81 -2.91 -0.02 3.13 16 20 C 0.01 0.41 5.46 84.66 0.46 0.87 16 21 N -0.93 -57.12 13.29 21.45 0.28 -56.83 16 22 Si 0.97 45.49 29.54 68.60 2.03 47.51 16 23 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 24 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 25 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 26 H 0.07 1.84 5.42 -2.39 -0.01 1.83 16 27 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.09 1.69 7.57 -2.39 -0.02 1.68 16 29 H 0.34 11.41 7.28 -89.70 -0.65 10.75 16 30 H 0.05 0.98 8.13 -2.39 -0.02 0.96 16 31 H 0.05 0.94 7.43 -2.39 -0.02 0.92 16 32 H 0.08 1.17 6.48 -2.39 -0.02 1.15 16 33 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.06 1.33 7.84 -2.39 -0.02 1.32 16 35 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 38 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 39 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.08 0.93 6.33 -2.39 -0.02 0.92 16 42 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 43 H 0.07 2.11 8.11 -2.39 -0.02 2.09 16 44 H 0.11 2.42 4.11 -2.39 -0.01 2.41 16 45 H 0.02 1.26 8.07 -2.39 -0.02 1.24 16 46 H 0.00 -0.25 7.36 -2.39 -0.02 -0.26 16 47 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 Total: -1.00 -73.03 361.89 2.70 -70.33 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: 0.28 Total: 21.37 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: 5.23 Total: -0.46 kcal Atomic # 7 Polarization: -102.55 SS G_CDS: -4.79 Total: -107.35 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -0.05 Total: -31.41 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.51 kcal Total: -73.03 2.70 -70.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184657935.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.253 kcal (2) G-P(sol) polarization free energy of solvation -73.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds