Wall clock time and date at job start Tue Mar 31 2020 05:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 5 5 C 1.46899 * 111.00313 * 275.00230 * 4 2 1 6 6 C 1.50699 * 109.47386 * 179.97438 * 5 4 2 7 7 O 1.21291 * 119.99890 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00215 * 180.02562 * 6 5 4 9 9 C 1.37093 * 120.00291 * 179.97438 * 8 6 5 10 10 H 1.08002 * 119.99982 * 359.97438 * 9 8 6 11 11 C 1.38947 * 120.00170 * 179.97438 * 9 8 6 12 12 N 1.31415 * 120.00092 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00086 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46933 * 60.00219 * 13 11 9 15 15 H 1.48497 * 109.47101 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47193 * 300.00385 * 13 11 9 17 17 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 18 18 H 1.09007 * 109.47135 * 184.99942 * 17 2 1 19 19 C 1.53001 * 109.46997 * 304.99683 * 17 2 1 20 20 C 1.53000 * 109.47166 * 64.99895 * 17 2 1 21 21 C 1.52996 * 109.46950 * 180.02562 * 20 17 2 22 22 C 1.53003 * 109.47304 * 179.97438 * 21 20 17 23 23 C 1.53001 * 109.47154 * 59.99572 * 22 21 20 24 24 C 1.53006 * 109.46997 * 300.00430 * 23 22 21 25 25 C 1.52995 * 109.47234 * 60.00112 * 24 23 22 26 26 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 29 29 H 1.00906 * 111.00118 * 38.95572 * 4 2 1 30 30 H 1.09003 * 109.46741 * 300.00007 * 5 4 2 31 31 H 1.09003 * 109.47153 * 59.99606 * 5 4 2 32 32 H 0.97001 * 119.99616 * 359.97438 * 8 6 5 33 33 H 0.96996 * 120.00008 * 179.97438 * 12 11 9 34 34 H 1.08992 * 109.47075 * 180.02562 * 19 17 2 35 35 H 1.09000 * 109.46998 * 300.00082 * 19 17 2 36 36 H 1.08998 * 109.47077 * 59.99896 * 19 17 2 37 37 H 1.08998 * 109.46865 * 300.00077 * 20 17 2 38 38 H 1.09007 * 109.46984 * 299.99822 * 21 20 17 39 39 H 1.08996 * 109.47312 * 59.99462 * 21 20 17 40 40 H 1.08998 * 109.46693 * 299.99871 * 22 21 20 41 41 H 1.08992 * 109.47399 * 179.97438 * 22 21 20 42 42 H 1.08993 * 109.47190 * 180.02562 * 23 22 21 43 43 H 1.09007 * 109.46967 * 60.00274 * 23 22 21 44 44 H 1.08995 * 109.46794 * 299.99978 * 24 23 22 45 45 H 1.08997 * 109.46925 * 179.97438 * 24 23 22 46 46 H 1.09002 * 109.47112 * 179.97438 * 25 24 23 47 47 H 1.09003 * 109.47743 * 59.99455 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 2.0825 0.2225 2.3469 6 6 2.5875 -0.5219 3.5559 7 8 2.8671 -1.6991 3.4703 8 7 2.7274 0.1200 4.7327 9 6 3.1863 -0.5573 5.8328 10 1 3.4353 -1.6055 5.7565 11 6 3.3311 0.1047 7.0458 12 7 3.0286 1.3802 7.1385 13 14 3.9557 -0.8184 8.5449 14 1 5.3114 -1.3562 8.2656 15 1 4.0199 0.1067 9.7046 16 1 3.0328 -1.9395 8.8559 17 6 2.0400 -0.7212 -1.2494 18 1 3.1264 -0.7994 -1.2057 19 6 1.4300 -2.1228 -1.3139 20 6 1.6352 0.0691 -2.4954 21 6 2.1447 -0.6524 -3.7446 22 6 1.7394 0.1375 -4.9908 23 6 2.3494 1.5392 -4.9269 24 6 1.8398 2.2606 -3.6775 25 6 2.2452 1.4708 -2.4315 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.4496 -1.4980 1.4100 30 1 2.7589 1.0462 2.1181 31 1 1.0871 0.6162 2.5525 32 1 2.5035 1.0613 4.8013 33 1 3.1294 1.8422 7.9854 34 1 1.7936 -2.6367 -2.2036 35 1 1.7184 -2.6858 -0.4262 36 1 0.3437 -2.0446 -1.3574 37 1 0.5489 0.1473 -2.5390 38 1 3.2310 -0.7310 -3.7012 39 1 1.7098 -1.6508 -3.7904 40 1 0.6531 0.2156 -5.0339 41 1 2.1027 -0.3763 -5.8807 42 1 2.0603 2.1020 -5.8143 43 1 3.4358 1.4610 -4.8837 44 1 0.7535 2.3387 -3.7207 45 1 2.2747 3.2590 -3.6317 46 1 1.8826 1.9850 -1.5414 47 1 3.3316 1.3926 -2.3882 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185505987.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:58 Heat of formation + Delta-G solvation = -75.236366 kcal Electronic energy + Delta-G solvation = -22772.548851 eV Core-core repulsion = 19567.452242 eV Total energy + Delta-G solvation = -3205.096609 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.67910 -38.21551 -36.69662 -33.99007 -33.19358 -31.19209 -31.01933 -29.74138 -28.44453 -26.33729 -24.77518 -23.83777 -22.60290 -21.76612 -20.01028 -19.33588 -18.80202 -17.85322 -16.14029 -15.95129 -15.36399 -14.86107 -14.54734 -14.42023 -14.30713 -13.92577 -13.84933 -13.74077 -13.43943 -13.23709 -12.58338 -12.46191 -12.38084 -12.12139 -11.89720 -11.77476 -11.53764 -11.46537 -11.33752 -11.23656 -11.01270 -10.97679 -10.83235 -10.53625 -10.42175 -10.34941 -10.18792 -9.98688 -9.83768 -9.46814 -8.38768 -7.95663 -7.89251 -6.38597 -3.79289 3.22223 3.27434 3.32099 3.95702 4.12956 4.33128 4.53166 4.58835 4.68211 4.93030 4.98045 5.11761 5.19439 5.20889 5.26567 5.29258 5.34447 5.38611 5.41030 5.46742 5.49046 5.60768 5.63428 5.74820 5.80133 5.85267 5.91216 5.94874 6.00097 6.01712 6.02131 6.06219 6.08589 6.14320 6.20329 6.27832 6.32339 6.34628 6.49389 6.60029 7.37698 7.57892 7.79633 8.09934 8.65277 9.21229 9.58325 10.10252 10.79246 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.036148 B = 0.002866 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.409512 B = 9768.672224 C =10100.745819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.085 3.915 3 H 0.078 0.922 4 N -0.662 5.662 5 C 0.050 3.950 6 C 0.442 3.558 7 O -0.583 6.583 8 N -0.565 5.565 9 C -0.299 4.299 10 H 0.102 0.898 11 C 0.022 3.978 12 N -0.903 5.903 13 Si 0.931 3.069 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.274 1.274 17 C -0.073 4.073 18 H 0.077 0.923 19 C -0.151 4.151 20 C -0.081 4.081 21 C -0.115 4.115 22 C -0.119 4.119 23 C -0.120 4.120 24 C -0.119 4.119 25 C -0.118 4.118 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.348 0.652 30 H 0.084 0.916 31 H 0.041 0.959 32 H 0.392 0.608 33 H 0.272 0.728 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.051 0.949 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.058 0.942 46 H 0.064 0.936 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.176 2.214 -21.756 22.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.025 4.025 3 H 0.096 0.904 4 N -0.294 5.294 5 C -0.082 4.082 6 C 0.227 3.773 7 O -0.467 6.467 8 N -0.202 5.202 9 C -0.428 4.428 10 H 0.120 0.880 11 C -0.180 4.180 12 N -0.545 5.545 13 Si 0.758 3.242 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.199 1.199 17 C -0.092 4.092 18 H 0.095 0.905 19 C -0.208 4.208 20 C -0.100 4.100 21 C -0.153 4.153 22 C -0.157 4.157 23 C -0.157 4.157 24 C -0.157 4.157 25 C -0.155 4.155 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.168 0.832 30 H 0.102 0.898 31 H 0.059 0.941 32 H 0.225 0.775 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.083 0.917 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.304 1.625 -21.780 22.261 hybrid contribution -0.808 0.410 1.111 1.434 sum -5.112 2.035 -20.669 21.389 Atomic orbital electron populations 1.22631 0.97963 1.02261 1.01764 1.21653 0.92172 0.97945 0.90713 0.90426 1.60193 1.57736 1.09006 1.02488 1.21694 0.99700 0.95798 0.91034 1.19861 0.84981 0.88240 0.84193 1.90516 1.55260 1.16308 1.84661 1.41865 1.57948 1.12445 1.07941 1.19652 1.40010 0.96390 0.86791 0.88017 1.25254 0.97715 0.95774 0.99231 1.69606 1.48810 1.08839 1.27217 0.85923 0.79457 0.78807 0.80057 1.19894 1.21000 1.19939 1.21115 1.01035 0.94628 0.92405 0.90457 1.21929 1.00237 0.96657 1.01965 1.21226 1.00131 0.94485 0.94157 1.21635 1.01076 0.98696 0.93872 1.21534 1.00492 0.95760 0.97872 1.21538 1.00511 0.96006 0.97658 1.21533 1.00743 0.98534 0.94861 1.21661 1.00953 0.95437 0.97493 0.92955 0.92070 0.92169 0.83204 0.89805 0.94065 0.77493 0.91865 0.92980 0.91805 0.93017 0.91264 0.92030 0.91754 0.92273 0.92408 0.92526 0.92096 0.92271 0.92299 0.91699 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.09 8.43 37.16 0.31 -1.78 16 2 C 0.09 1.07 2.15 -67.71 -0.15 0.92 16 3 H 0.08 0.97 5.83 -51.93 -0.30 0.67 16 4 N -0.66 -10.90 5.53 -107.99 -0.60 -11.50 16 5 C 0.05 0.92 5.97 -4.98 -0.03 0.89 16 6 C 0.44 10.66 7.82 -10.99 -0.09 10.57 16 7 O -0.58 -16.14 15.78 5.55 0.09 -16.06 16 8 N -0.57 -14.61 5.29 -10.97 -0.06 -14.67 16 9 C -0.30 -8.47 9.68 -14.94 -0.14 -8.62 16 10 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 11 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 12 N -0.90 -24.90 13.05 55.50 0.72 -24.17 16 13 Si 0.93 21.33 29.55 -169.99 -5.02 16.31 16 14 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 17 C -0.07 -0.82 1.96 -90.62 -0.18 -0.99 16 18 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 19 C -0.15 -1.65 8.17 37.16 0.30 -1.35 16 20 C -0.08 -0.75 1.53 -90.62 -0.14 -0.89 16 21 C -0.12 -0.99 4.85 -26.73 -0.13 -1.12 16 22 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 23 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 24 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 25 C -0.12 -1.08 4.86 -26.73 -0.13 -1.21 16 26 H 0.05 0.62 7.45 -51.93 -0.39 0.23 16 27 H 0.06 0.68 6.33 -51.93 -0.33 0.35 16 28 H 0.06 0.58 6.57 -51.93 -0.34 0.24 16 29 H 0.35 6.00 7.50 -39.29 -0.29 5.70 16 30 H 0.08 1.42 8.06 -51.93 -0.42 1.00 16 31 H 0.04 0.68 7.44 -51.93 -0.39 0.30 16 32 H 0.39 9.68 7.90 -40.82 -0.32 9.36 16 33 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 34 H 0.05 0.52 6.43 -51.93 -0.33 0.18 16 35 H 0.06 0.82 7.33 -51.93 -0.38 0.44 16 36 H 0.05 0.52 6.34 -51.93 -0.33 0.19 16 37 H 0.07 0.64 6.56 -51.93 -0.34 0.30 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.54 6.43 -51.93 -0.33 0.21 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.62 6.32 -51.93 -0.33 0.29 16 47 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 354.45 15.07 5.34 5.34 Total: -1.00 -30.22 354.45 -8.61 -38.82 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -8.14 Total: 12.27 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -0.94 Total: -6.35 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: 0.07 Total: -50.34 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: 0.09 Total: -16.06 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.22 -8.61 -38.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185505987.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.414 kcal (2) G-P(sol) polarization free energy of solvation -30.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds