Wall clock time and date at job start Tue Mar 31 2020 05:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46530 * 2 1 4 4 N 1.46903 * 109.46840 * 119.99633 * 2 1 3 5 5 C 1.46898 * 110.99995 * 275.00044 * 4 2 1 6 6 C 1.50707 * 109.47239 * 180.02562 * 5 4 2 7 7 O 1.21291 * 119.99759 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99888 * 180.02562 * 6 5 4 9 9 C 1.37101 * 119.99691 * 180.02562 * 8 6 5 10 10 H 1.08001 * 119.99762 * 359.97438 * 9 8 6 11 11 C 1.38945 * 119.99975 * 180.02562 * 9 8 6 12 12 N 1.31411 * 120.00179 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00010 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47559 * 59.99509 * 13 11 9 15 15 H 1.48500 * 109.47239 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47059 * 299.99479 * 13 11 9 17 17 C 1.52992 * 109.47472 * 239.99848 * 2 1 3 18 18 H 1.09004 * 109.47372 * 54.04882 * 17 2 1 19 19 C 1.53011 * 109.47052 * 294.05127 * 17 2 1 20 20 C 1.52996 * 109.47472 * 174.05343 * 17 2 1 21 21 C 1.53005 * 109.46770 * 303.92788 * 20 17 2 22 22 C 1.53005 * 109.47147 * 179.97438 * 21 20 17 23 23 C 1.52999 * 109.46773 * 59.99722 * 22 21 20 24 24 C 1.53005 * 109.47511 * 300.00055 * 23 22 21 25 25 C 1.52994 * 109.47514 * 183.92820 * 20 17 2 26 26 H 1.08999 * 109.47325 * 296.63902 * 1 2 3 27 27 H 1.08998 * 109.47204 * 56.64885 * 1 2 3 28 28 H 1.09005 * 109.47069 * 176.64103 * 1 2 3 29 29 H 1.00896 * 110.99999 * 151.05045 * 4 2 1 30 30 H 1.09000 * 109.47260 * 300.00205 * 5 4 2 31 31 H 1.09007 * 109.46997 * 60.00562 * 5 4 2 32 32 H 0.96995 * 120.00368 * 359.97438 * 8 6 5 33 33 H 0.97000 * 120.00434 * 180.02562 * 12 11 9 34 34 H 1.09004 * 109.46832 * 300.00086 * 19 17 2 35 35 H 1.09000 * 109.47046 * 59.99627 * 19 17 2 36 36 H 1.08997 * 109.47167 * 179.97438 * 19 17 2 37 37 H 1.09000 * 109.47393 * 63.92477 * 20 17 2 38 38 H 1.09000 * 109.46908 * 299.99985 * 21 20 17 39 39 H 1.09002 * 109.47216 * 59.99524 * 21 20 17 40 40 H 1.09001 * 109.46807 * 299.99931 * 22 21 20 41 41 H 1.08992 * 109.47059 * 179.97438 * 22 21 20 42 42 H 1.09000 * 109.47133 * 179.97438 * 23 22 21 43 43 H 1.09001 * 109.47283 * 60.00501 * 23 22 21 44 44 H 1.09000 * 109.46908 * 300.00036 * 24 23 22 45 45 H 1.08994 * 109.46730 * 180.02562 * 24 23 22 46 46 H 1.09005 * 109.47080 * 300.00016 * 25 20 17 47 47 H 1.09000 * 109.47071 * 59.99460 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0824 0.2227 2.3469 6 6 2.5884 -0.5213 3.5559 7 8 2.8695 -1.6981 3.4699 8 7 2.7285 0.1209 4.7325 9 6 3.1893 -0.5559 5.8322 10 1 3.4396 -1.6037 5.7556 11 6 3.3332 0.1059 7.0453 12 7 3.0281 1.3808 7.1386 13 14 3.9604 -0.8163 8.5438 14 1 5.3171 -1.3514 8.2638 15 1 4.0233 0.1086 9.7039 16 1 3.0400 -1.9393 8.8549 17 6 2.0401 -0.7212 -1.2491 18 1 1.5924 -0.2727 -2.1360 19 6 1.6558 -2.2005 -1.1766 20 6 3.5627 -0.5931 -1.3261 21 6 3.9519 0.8864 -1.2999 22 6 5.4747 1.0146 -1.3762 23 6 5.9756 0.3783 -2.6743 24 6 5.5863 -1.1012 -2.7005 25 6 4.0632 -1.2291 -2.6245 26 1 -0.3634 0.4608 0.9186 27 1 -0.3633 0.5650 -0.8584 28 1 -0.3633 -1.0259 -0.0602 29 1 2.9173 -1.1204 1.0289 30 1 2.7588 1.0463 2.1182 31 1 1.0869 0.6164 2.5525 32 1 2.5040 1.0620 4.8011 33 1 3.1290 1.8429 7.9854 34 1 2.1035 -2.6491 -0.2897 35 1 0.5710 -2.2918 -1.1217 36 1 2.0188 -2.7143 -2.0667 37 1 4.0138 -1.1026 -0.4746 38 1 3.5009 1.3958 -2.1514 39 1 3.5954 1.3396 -0.3749 40 1 5.9253 0.5052 -0.5244 41 1 5.7519 2.0685 -1.3580 42 1 7.0603 0.4700 -2.7290 43 1 5.5250 0.8877 -3.5261 44 1 6.0370 -1.6106 -1.8488 45 1 5.9436 -1.5544 -3.6252 46 1 3.7858 -2.2832 -2.6432 47 1 3.6121 -0.7197 -3.4760 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185506002.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:00 Heat of formation + Delta-G solvation = -74.285327 kcal Electronic energy + Delta-G solvation = -23252.896846 eV Core-core repulsion = 20047.841477 eV Total energy + Delta-G solvation = -3205.055369 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.72130 -38.13423 -36.59513 -33.94643 -32.94076 -31.17921 -30.89249 -30.26289 -28.29662 -26.46207 -24.63791 -23.66490 -22.58122 -21.55766 -19.97276 -19.19528 -18.98858 -17.85153 -16.12525 -15.94513 -15.42112 -15.15031 -14.44309 -14.26173 -14.21955 -14.01174 -13.76774 -13.55939 -13.48311 -12.83022 -12.60608 -12.48900 -12.27174 -12.02550 -11.75572 -11.61823 -11.59380 -11.46325 -11.38613 -11.18336 -11.01992 -10.91574 -10.71794 -10.63950 -10.41954 -10.38640 -10.17853 -9.92469 -9.77573 -9.46217 -8.36223 -7.94864 -7.88323 -6.38076 -3.78757 3.22474 3.27687 3.32327 3.96456 4.15951 4.43750 4.50955 4.58379 4.65927 4.93994 5.02604 5.07258 5.21622 5.23733 5.29519 5.34971 5.41225 5.44713 5.47220 5.58602 5.60193 5.67371 5.77465 5.80861 5.83061 5.89935 5.92445 5.98708 6.02830 6.05689 6.08929 6.11949 6.14695 6.21938 6.22808 6.33641 6.33992 6.39960 6.54076 6.62441 7.39919 7.58281 7.82558 8.10601 8.65882 9.21775 9.59007 10.10939 10.79754 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019549 B = 0.003762 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.987705 B = 7440.583029 C = 8062.089528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.083 3.917 3 H 0.045 0.955 4 N -0.660 5.660 5 C 0.050 3.950 6 C 0.442 3.558 7 O -0.583 6.583 8 N -0.565 5.565 9 C -0.299 4.299 10 H 0.102 0.898 11 C 0.022 3.978 12 N -0.903 5.903 13 Si 0.930 3.070 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.274 1.274 17 C -0.085 4.085 18 H 0.070 0.930 19 C -0.144 4.144 20 C -0.088 4.088 21 C -0.117 4.117 22 C -0.121 4.121 23 C -0.118 4.118 24 C -0.121 4.121 25 C -0.111 4.111 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.063 0.937 29 H 0.348 0.652 30 H 0.040 0.960 31 H 0.084 0.916 32 H 0.392 0.608 33 H 0.271 0.729 34 H 0.068 0.932 35 H 0.055 0.945 36 H 0.047 0.953 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.062 0.938 45 H 0.057 0.943 46 H 0.065 0.935 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.466 1.169 -19.804 19.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.027 4.027 3 H 0.062 0.938 4 N -0.295 5.295 5 C -0.083 4.083 6 C 0.228 3.772 7 O -0.467 6.467 8 N -0.202 5.202 9 C -0.428 4.428 10 H 0.120 0.880 11 C -0.179 4.179 12 N -0.545 5.545 13 Si 0.757 3.243 14 H -0.200 1.200 15 H -0.210 1.210 16 H -0.199 1.199 17 C -0.104 4.104 18 H 0.088 0.912 19 C -0.201 4.201 20 C -0.107 4.107 21 C -0.154 4.154 22 C -0.159 4.159 23 C -0.155 4.155 24 C -0.159 4.159 25 C -0.149 4.149 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.170 0.830 30 H 0.058 0.942 31 H 0.102 0.898 32 H 0.225 0.775 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.083 0.917 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.058 0.253 -19.515 19.517 hybrid contribution 0.907 0.868 0.708 1.441 sum 0.964 1.120 -18.807 18.865 Atomic orbital electron populations 1.21848 0.95043 1.02240 1.00802 1.21627 0.95650 0.95789 0.89600 0.93768 1.60202 1.34734 1.31866 1.02689 1.21713 1.01007 0.93978 0.91556 1.19858 0.84730 0.88191 0.84447 1.90513 1.55242 1.16179 1.84795 1.41862 1.57899 1.12425 1.08005 1.19651 1.39900 0.96425 0.86868 0.88031 1.25243 0.97726 0.95768 0.99183 1.69605 1.48776 1.08876 1.27207 0.85930 0.79408 0.78846 0.80103 1.19955 1.21003 1.19901 1.21315 0.94655 0.97118 0.97300 0.91157 1.21829 1.01557 0.94921 1.01808 1.21265 0.95103 0.95901 0.98386 1.21668 0.95636 0.96309 1.01796 1.21542 0.96015 1.00392 0.97942 1.21521 1.00178 0.95951 0.97871 1.21554 0.96284 0.96421 1.01593 1.21596 0.95219 1.00789 0.97277 0.92769 0.93250 0.91823 0.83034 0.94224 0.89810 0.77512 0.91878 0.91250 0.92575 0.93412 0.90853 0.92190 0.91811 0.91833 0.92257 0.92406 0.92329 0.91892 0.92378 0.91668 0.92309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.28 37.16 0.34 -1.37 16 2 C 0.08 1.06 2.05 -67.71 -0.14 0.92 16 3 H 0.04 0.56 5.69 -51.93 -0.30 0.26 16 4 N -0.66 -10.80 5.13 -107.99 -0.55 -11.35 16 5 C 0.05 0.91 5.97 -4.97 -0.03 0.88 16 6 C 0.44 10.65 7.82 -10.98 -0.09 10.56 16 7 O -0.58 -16.07 15.78 5.55 0.09 -15.98 16 8 N -0.57 -14.59 5.29 -10.96 -0.06 -14.65 16 9 C -0.30 -8.46 9.68 -14.93 -0.14 -8.61 16 10 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 11 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 12 N -0.90 -24.87 13.05 55.50 0.72 -24.15 16 13 Si 0.93 21.32 29.55 -169.99 -5.02 16.29 16 14 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 15 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 16 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 17 C -0.09 -0.93 1.72 -90.62 -0.16 -1.08 16 18 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 19 C -0.14 -1.65 8.47 37.16 0.31 -1.33 16 20 C -0.09 -0.94 1.54 -90.62 -0.14 -1.08 16 21 C -0.12 -1.22 4.76 -26.73 -0.13 -1.35 16 22 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16 23 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 24 C -0.12 -1.11 5.93 -26.71 -0.16 -1.27 16 25 C -0.11 -1.05 4.94 -26.71 -0.13 -1.18 16 26 H 0.05 0.70 7.38 -51.93 -0.38 0.32 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.80 6.45 -51.93 -0.33 0.47 16 29 H 0.35 5.97 5.78 -39.29 -0.23 5.74 16 30 H 0.04 0.66 8.06 -51.93 -0.42 0.25 16 31 H 0.08 1.44 7.38 -51.93 -0.38 1.05 16 32 H 0.39 9.69 7.90 -40.82 -0.32 9.37 16 33 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 34 H 0.07 0.95 7.12 -51.93 -0.37 0.58 16 35 H 0.06 0.64 6.53 -51.93 -0.34 0.30 16 36 H 0.05 0.48 6.53 -51.93 -0.34 0.14 16 37 H 0.07 0.93 6.60 -51.93 -0.34 0.59 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.74 6.23 -51.93 -0.32 0.41 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.61 6.53 -51.93 -0.34 0.27 16 47 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 354.68 15.07 5.34 5.34 Total: -1.00 -30.04 354.68 -8.50 -38.54 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: -8.16 Total: 12.95 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -0.87 Total: -7.00 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: 0.11 Total: -50.15 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: 0.09 Total: -15.98 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.04 -8.50 -38.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185506002.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.750 kcal (2) G-P(sol) polarization free energy of solvation -30.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds