Wall clock time and date at job start Tue Mar 31 2020 05:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46530 * 2 1 4 4 N 1.46903 * 109.46840 * 119.99633 * 2 1 3 5 5 C 1.46898 * 110.99995 * 275.00044 * 4 2 1 6 6 C 1.50707 * 109.47239 * 180.02562 * 5 4 2 7 7 O 1.21291 * 119.99759 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99888 * 180.02562 * 6 5 4 9 9 C 1.37101 * 119.99691 * 180.02562 * 8 6 5 10 10 H 1.08001 * 119.99762 * 359.97438 * 9 8 6 11 11 C 1.38945 * 119.99975 * 180.02562 * 9 8 6 12 12 N 1.31411 * 120.00179 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00010 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47559 * 59.99509 * 13 11 9 15 15 H 1.48500 * 109.47239 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47059 * 299.99479 * 13 11 9 17 17 C 1.52992 * 109.47472 * 239.99848 * 2 1 3 18 18 H 1.09004 * 109.47372 * 54.04882 * 17 2 1 19 19 C 1.53011 * 109.47052 * 294.05127 * 17 2 1 20 20 C 1.52996 * 109.47472 * 174.05343 * 17 2 1 21 21 C 1.53005 * 109.46770 * 303.92788 * 20 17 2 22 22 C 1.53005 * 109.47147 * 179.97438 * 21 20 17 23 23 C 1.52999 * 109.46773 * 59.99722 * 22 21 20 24 24 C 1.53005 * 109.47511 * 300.00055 * 23 22 21 25 25 C 1.52994 * 109.47514 * 183.92820 * 20 17 2 26 26 H 1.08999 * 109.47325 * 296.63902 * 1 2 3 27 27 H 1.08998 * 109.47204 * 56.64885 * 1 2 3 28 28 H 1.09005 * 109.47069 * 176.64103 * 1 2 3 29 29 H 1.00896 * 110.99999 * 151.05045 * 4 2 1 30 30 H 1.09000 * 109.47260 * 300.00205 * 5 4 2 31 31 H 1.09007 * 109.46997 * 60.00562 * 5 4 2 32 32 H 0.96995 * 120.00368 * 359.97438 * 8 6 5 33 33 H 0.97000 * 120.00434 * 180.02562 * 12 11 9 34 34 H 1.09004 * 109.46832 * 300.00086 * 19 17 2 35 35 H 1.09000 * 109.47046 * 59.99627 * 19 17 2 36 36 H 1.08997 * 109.47167 * 179.97438 * 19 17 2 37 37 H 1.09000 * 109.47393 * 63.92477 * 20 17 2 38 38 H 1.09000 * 109.46908 * 299.99985 * 21 20 17 39 39 H 1.09002 * 109.47216 * 59.99524 * 21 20 17 40 40 H 1.09001 * 109.46807 * 299.99931 * 22 21 20 41 41 H 1.08992 * 109.47059 * 179.97438 * 22 21 20 42 42 H 1.09000 * 109.47133 * 179.97438 * 23 22 21 43 43 H 1.09001 * 109.47283 * 60.00501 * 23 22 21 44 44 H 1.09000 * 109.46908 * 300.00036 * 24 23 22 45 45 H 1.08994 * 109.46730 * 180.02562 * 24 23 22 46 46 H 1.09005 * 109.47080 * 300.00016 * 25 20 17 47 47 H 1.09000 * 109.47071 * 59.99460 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0824 0.2227 2.3469 6 6 2.5884 -0.5213 3.5559 7 8 2.8695 -1.6981 3.4699 8 7 2.7285 0.1209 4.7325 9 6 3.1893 -0.5559 5.8322 10 1 3.4396 -1.6037 5.7556 11 6 3.3332 0.1059 7.0453 12 7 3.0281 1.3808 7.1386 13 14 3.9604 -0.8163 8.5438 14 1 5.3171 -1.3514 8.2638 15 1 4.0233 0.1086 9.7039 16 1 3.0400 -1.9393 8.8549 17 6 2.0401 -0.7212 -1.2491 18 1 1.5924 -0.2727 -2.1360 19 6 1.6558 -2.2005 -1.1766 20 6 3.5627 -0.5931 -1.3261 21 6 3.9519 0.8864 -1.2999 22 6 5.4747 1.0146 -1.3762 23 6 5.9756 0.3783 -2.6743 24 6 5.5863 -1.1012 -2.7005 25 6 4.0632 -1.2291 -2.6245 26 1 -0.3634 0.4608 0.9186 27 1 -0.3633 0.5650 -0.8584 28 1 -0.3633 -1.0259 -0.0602 29 1 2.9173 -1.1204 1.0289 30 1 2.7588 1.0463 2.1182 31 1 1.0869 0.6164 2.5525 32 1 2.5040 1.0620 4.8011 33 1 3.1290 1.8429 7.9854 34 1 2.1035 -2.6491 -0.2897 35 1 0.5710 -2.2918 -1.1217 36 1 2.0188 -2.7143 -2.0667 37 1 4.0138 -1.1026 -0.4746 38 1 3.5009 1.3958 -2.1514 39 1 3.5954 1.3396 -0.3749 40 1 5.9253 0.5052 -0.5244 41 1 5.7519 2.0685 -1.3580 42 1 7.0603 0.4700 -2.7290 43 1 5.5250 0.8877 -3.5261 44 1 6.0370 -1.6106 -1.8488 45 1 5.9436 -1.5544 -3.6252 46 1 3.7858 -2.2832 -2.6432 47 1 3.6121 -0.7197 -3.4760 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185506002.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:00 Heat of formation + Delta-G solvation = -92.552373 kcal Electronic energy + Delta-G solvation = -23253.688964 eV Core-core repulsion = 20047.841477 eV Total energy + Delta-G solvation = -3205.847487 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.73733 -39.90609 -37.67486 -35.96995 -34.14935 -33.23329 -31.71255 -31.28276 -29.21875 -28.11221 -26.10628 -24.97646 -23.38200 -22.45698 -21.16716 -20.69420 -20.00232 -19.91161 -17.76412 -17.03486 -16.81774 -16.34874 -16.29712 -15.66379 -15.43442 -15.05588 -14.99553 -14.71932 -14.39596 -14.24600 -13.82044 -13.56118 -13.45463 -13.34649 -13.21774 -12.95156 -12.79122 -12.59284 -12.54215 -12.43892 -12.30282 -12.12867 -11.96912 -11.77578 -11.64158 -11.54614 -11.50400 -11.24673 -10.74543 -10.63931 -10.31533 -10.02201 -9.21081 -8.46936 -5.95965 1.39191 1.40739 1.51953 2.04869 2.28888 2.97781 3.20152 3.55730 3.68037 3.72956 3.86901 4.09232 4.19537 4.23281 4.33129 4.37739 4.45673 4.49140 4.55878 4.62024 4.63478 4.67468 4.73918 4.78208 4.81479 4.90850 4.94823 4.99499 5.07834 5.14228 5.19883 5.24774 5.27820 5.30908 5.35791 5.39897 5.41855 5.50953 5.53333 5.62653 5.69337 5.93720 6.20171 6.50496 6.59978 7.11933 7.55583 8.11117 8.70389 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019549 B = 0.003762 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.987705 B = 7440.583029 C = 8062.089528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.082 3.918 3 H 0.052 0.948 4 N -0.671 5.671 5 C 0.066 3.934 6 C 0.438 3.562 7 O -0.623 6.623 8 N -0.573 5.573 9 C -0.335 4.335 10 H 0.078 0.922 11 C -0.012 4.012 12 N -0.921 5.921 13 Si 0.993 3.007 14 H -0.272 1.272 15 H -0.269 1.269 16 H -0.272 1.272 17 C -0.077 4.077 18 H 0.093 0.907 19 C -0.140 4.140 20 C -0.084 4.084 21 C -0.114 4.114 22 C -0.123 4.123 23 C -0.114 4.114 24 C -0.122 4.122 25 C -0.107 4.107 26 H 0.042 0.958 27 H 0.075 0.925 28 H 0.055 0.945 29 H 0.341 0.659 30 H 0.059 0.941 31 H 0.099 0.901 32 H 0.396 0.604 33 H 0.278 0.722 34 H 0.039 0.961 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.045 0.955 38 H 0.076 0.924 39 H 0.049 0.951 40 H 0.042 0.958 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.046 0.954 45 H 0.071 0.929 46 H 0.064 0.936 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.171 2.049 -21.282 21.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.027 4.027 3 H 0.070 0.930 4 N -0.306 5.306 5 C -0.067 4.067 6 C 0.226 3.774 7 O -0.509 6.509 8 N -0.211 5.211 9 C -0.465 4.465 10 H 0.096 0.904 11 C -0.212 4.212 12 N -0.562 5.562 13 Si 0.816 3.184 14 H -0.197 1.197 15 H -0.194 1.194 16 H -0.197 1.197 17 C -0.096 4.096 18 H 0.111 0.889 19 C -0.197 4.197 20 C -0.103 4.103 21 C -0.151 4.151 22 C -0.161 4.161 23 C -0.152 4.152 24 C -0.159 4.159 25 C -0.145 4.145 26 H 0.061 0.939 27 H 0.094 0.906 28 H 0.075 0.925 29 H 0.162 0.838 30 H 0.076 0.924 31 H 0.117 0.883 32 H 0.229 0.771 33 H 0.087 0.913 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.094 0.906 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.065 0.935 45 H 0.090 0.910 46 H 0.083 0.917 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.252 1.162 -21.009 21.042 hybrid contribution 0.991 0.590 1.129 1.614 sum 0.739 1.752 -19.880 19.970 Atomic orbital electron populations 1.21850 0.94316 1.02145 1.01443 1.21764 0.96085 0.96055 0.88767 0.92984 1.60240 1.34460 1.32196 1.03662 1.21556 1.01711 0.93797 0.89640 1.20889 0.83140 0.87983 0.85405 1.90480 1.56605 1.18203 1.85607 1.41930 1.58325 1.12546 1.08251 1.19636 1.42238 0.95983 0.88638 0.90391 1.26036 0.97185 0.96615 1.01332 1.69668 1.48562 1.09730 1.28206 0.84994 0.78714 0.77847 0.76810 1.19682 1.19362 1.19730 1.21284 0.94717 0.96524 0.97064 0.88886 1.21781 1.01374 0.95399 1.01174 1.21201 0.94896 0.96040 0.98184 1.21638 0.95769 0.95967 1.01715 1.21551 0.95911 1.00636 0.97982 1.21504 1.00553 0.95683 0.97432 1.21563 0.96168 0.96599 1.01613 1.21570 0.95333 1.00784 0.96795 0.93851 0.90631 0.92548 0.83822 0.92360 0.88317 0.77063 0.91272 0.94165 0.92493 0.91800 0.93636 0.90585 0.93191 0.93879 0.91685 0.91986 0.91050 0.93480 0.90987 0.91729 0.90797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 9.28 71.98 0.67 -2.46 16 2 C 0.08 1.97 2.05 44.91 0.09 2.07 16 3 H 0.05 1.20 5.69 -2.39 -0.01 1.19 16 4 N -0.67 -22.01 5.13 -495.57 -2.54 -24.55 16 5 C 0.07 2.38 5.97 85.56 0.51 2.89 16 6 C 0.44 21.65 7.82 87.66 0.69 22.34 16 7 O -0.62 -35.62 15.78 -3.06 -0.05 -35.66 16 8 N -0.57 -30.33 5.29 -306.98 -1.62 -31.95 16 9 C -0.34 -19.50 9.68 84.04 0.81 -18.69 16 10 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 11 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 12 N -0.92 -50.48 13.05 21.66 0.28 -50.20 16 13 Si 0.99 43.61 29.55 68.60 2.03 45.64 16 14 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 15 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 16 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 17 C -0.08 -1.54 1.72 -10.79 -0.02 -1.56 16 18 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 19 C -0.14 -3.07 8.47 71.99 0.61 -2.46 16 20 C -0.08 -1.72 1.54 -10.80 -0.02 -1.74 16 21 C -0.11 -2.20 4.76 30.60 0.15 -2.06 16 22 C -0.12 -2.40 5.92 30.60 0.18 -2.22 16 23 C -0.11 -1.85 5.92 30.60 0.18 -1.67 16 24 C -0.12 -2.06 5.93 30.61 0.18 -1.88 16 25 C -0.11 -1.81 4.94 30.61 0.15 -1.66 16 26 H 0.04 1.05 7.38 -2.39 -0.02 1.04 16 27 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.06 1.34 6.45 -2.38 -0.02 1.32 16 29 H 0.34 12.07 5.78 -89.70 -0.52 11.55 16 30 H 0.06 1.91 8.06 -2.39 -0.02 1.89 16 31 H 0.10 3.31 7.38 -2.38 -0.02 3.29 16 32 H 0.40 19.90 7.90 -92.71 -0.73 19.17 16 33 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 34 H 0.04 1.11 7.12 -2.39 -0.02 1.10 16 35 H 0.06 1.22 6.53 -2.39 -0.02 1.21 16 36 H 0.06 1.17 6.53 -2.39 -0.02 1.16 16 37 H 0.05 1.19 6.60 -2.39 -0.02 1.18 16 38 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.05 1.10 6.23 -2.39 -0.01 1.08 16 40 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.06 1.10 6.53 -2.38 -0.02 1.08 16 47 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -65.47 354.68 2.46 -63.01 By element: Atomic # 1 Polarization: 43.28 SS G_CDS: -0.29 Total: 42.99 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: 4.65 Total: -9.28 kcal Atomic # 7 Polarization: -102.82 SS G_CDS: -3.88 Total: -106.70 kcal Atomic # 8 Polarization: -35.62 SS G_CDS: -0.05 Total: -35.66 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -65.47 2.46 -63.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185506002.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.538 kcal (2) G-P(sol) polarization free energy of solvation -65.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds