Wall clock time and date at job start Tue Mar 31 2020 05:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 109.47205 * 2 1 4 4 N 1.46897 * 109.47102 * 239.99740 * 2 1 3 5 5 C 1.46900 * 110.99994 * 84.99855 * 4 2 1 6 6 C 1.50704 * 109.46927 * 180.02562 * 5 4 2 7 7 O 1.21292 * 120.00282 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99523 * 179.73041 * 6 5 4 9 9 C 1.37093 * 119.99488 * 179.97438 * 8 6 5 10 10 H 1.08000 * 120.00674 * 0.02562 * 9 8 6 11 11 C 1.38955 * 119.99686 * 179.97438 * 9 8 6 12 12 N 1.31409 * 120.00233 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99881 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.46930 * 90.00414 * 13 11 9 15 15 H 1.48504 * 109.47093 * 209.99867 * 13 11 9 16 16 H 1.48494 * 109.47408 * 330.00139 * 13 11 9 17 17 C 1.52996 * 109.46968 * 119.99881 * 2 1 3 18 18 H 1.09001 * 109.47808 * 64.90870 * 17 2 1 19 19 C 1.53003 * 109.47328 * 184.91234 * 17 2 1 20 20 C 1.52999 * 109.47055 * 304.91031 * 17 2 1 21 21 C 1.52994 * 109.47256 * 295.73526 * 20 17 2 22 22 C 1.53000 * 109.47481 * 180.02562 * 21 20 17 23 23 C 1.52997 * 109.47463 * 59.99969 * 22 21 20 24 24 C 1.53001 * 109.47045 * 300.00475 * 23 22 21 25 25 C 1.53000 * 109.47378 * 59.99473 * 24 23 22 26 26 H 1.09001 * 109.47028 * 186.66936 * 1 2 3 27 27 H 1.09001 * 109.46824 * 306.66756 * 1 2 3 28 28 H 1.08991 * 109.47027 * 66.67034 * 1 2 3 29 29 H 1.00899 * 110.99915 * 208.95589 * 4 2 1 30 30 H 1.08996 * 109.47123 * 60.00271 * 5 4 2 31 31 H 1.08993 * 109.47264 * 299.99933 * 5 4 2 32 32 H 0.96997 * 120.00037 * 359.97438 * 8 6 5 33 33 H 0.96997 * 120.00182 * 180.02562 * 12 11 9 34 34 H 1.09000 * 109.47249 * 179.97438 * 19 17 2 35 35 H 1.09003 * 109.46795 * 299.99976 * 19 17 2 36 36 H 1.09001 * 109.46973 * 59.99124 * 19 17 2 37 37 H 1.08995 * 109.47338 * 55.73934 * 20 17 2 38 38 H 1.09004 * 109.47439 * 300.00290 * 21 20 17 39 39 H 1.09000 * 109.47096 * 60.00111 * 21 20 17 40 40 H 1.09005 * 109.46736 * 299.99835 * 22 21 20 41 41 H 1.09004 * 109.47484 * 180.02562 * 22 21 20 42 42 H 1.09003 * 109.47423 * 180.02562 * 23 22 21 43 43 H 1.08996 * 109.47208 * 59.99961 * 23 22 21 44 44 H 1.09004 * 109.47295 * 299.99650 * 24 23 22 45 45 H 1.09000 * 109.47343 * 179.97438 * 24 23 22 46 46 H 1.08996 * 109.47628 * 180.02562 * 25 24 23 47 47 H 1.09005 * 109.46736 * 60.00404 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0825 0.2225 -2.3469 6 6 2.5874 -0.5220 -3.5560 7 8 2.8678 -1.6990 -3.4701 8 7 2.7226 0.1188 -4.7339 9 6 3.1823 -0.5584 -5.8337 10 1 3.4358 -1.6054 -5.7564 11 6 3.3213 0.1021 -7.0483 12 7 3.0124 1.3759 -7.1427 13 14 3.9471 -0.8207 -8.5471 14 1 2.7982 -1.4089 -9.2816 15 1 4.6757 0.1180 -9.4378 16 1 4.8647 -1.9047 -8.1135 17 6 2.0400 -0.7212 1.2492 18 1 1.7503 -1.7711 1.2065 19 6 3.5651 -0.6152 1.3126 20 6 1.4317 -0.0747 2.4954 21 6 1.9240 1.3690 2.6129 22 6 1.3162 2.0154 3.8594 23 6 1.7417 1.2289 5.1008 24 6 1.2494 -0.2150 4.9833 25 6 1.8572 -0.8613 3.7368 26 1 -0.3633 -1.0207 0.1194 27 1 -0.3633 0.6137 0.8243 28 1 -0.3633 0.4069 -0.9436 29 1 2.9173 -1.1206 -1.0286 30 1 2.7589 1.0461 -2.1183 31 1 1.0871 0.6162 -2.5525 32 1 2.4946 1.0590 -4.8035 33 1 3.1090 1.8369 -7.9906 34 1 3.9283 -1.1286 2.2029 35 1 3.9984 -1.0757 0.4248 36 1 3.8548 0.4348 1.3554 37 1 0.3447 -0.0825 2.4149 38 1 3.0111 1.3769 2.6934 39 1 1.6212 1.9293 1.7283 40 1 0.2291 2.0076 3.7792 41 1 1.6666 3.0442 3.9429 42 1 1.3083 1.6891 5.9888 43 1 2.8287 1.2366 5.1809 44 1 0.1623 -0.2229 4.9032 45 1 1.5529 -0.7755 5.8675 46 1 1.5061 -1.8898 3.6528 47 1 2.9443 -0.8536 3.8170 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185506019.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:03 Heat of formation + Delta-G solvation = -74.238703 kcal Electronic energy + Delta-G solvation = -22817.127362 eV Core-core repulsion = 19612.074015 eV Total energy + Delta-G solvation = -3205.053347 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.82061 -38.21218 -36.58703 -33.97186 -33.13204 -31.18612 -30.98580 -29.80841 -28.99149 -26.27404 -24.32779 -23.87751 -22.93813 -21.59818 -20.25329 -19.27007 -18.69076 -17.83759 -16.31023 -15.79914 -15.41362 -15.08897 -14.49013 -14.45577 -14.36097 -14.12807 -13.96189 -13.62661 -13.47714 -13.04348 -12.48968 -12.39007 -12.31005 -12.23125 -12.00653 -11.82745 -11.58061 -11.50556 -11.44929 -11.12715 -11.07581 -10.95857 -10.89398 -10.55549 -10.37434 -10.26807 -10.19239 -10.06200 -9.91517 -9.47761 -8.37488 -7.96852 -7.90593 -6.38708 -3.79315 3.19962 3.28147 3.34212 3.95433 4.12815 4.32604 4.50493 4.53612 4.63017 4.86008 4.88629 5.09283 5.14334 5.15298 5.28110 5.29642 5.31857 5.34689 5.38521 5.47332 5.48923 5.56785 5.65465 5.77519 5.81610 5.85102 5.88151 5.91023 5.93816 5.98506 5.99227 6.04939 6.08336 6.10777 6.17035 6.24600 6.31894 6.33760 6.40507 6.54051 7.38758 7.58054 7.81207 8.10164 8.65236 9.21265 9.58312 10.10181 10.79215 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.042471 B = 0.002812 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.111308 B = 9955.883860 C =10143.923234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.088 3.912 3 H 0.042 0.958 4 N -0.666 5.666 5 C 0.051 3.949 6 C 0.442 3.558 7 O -0.583 6.583 8 N -0.565 5.565 9 C -0.298 4.298 10 H 0.103 0.897 11 C 0.021 3.979 12 N -0.903 5.903 13 Si 0.930 3.070 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.270 1.270 17 C -0.087 4.087 18 H 0.079 0.921 19 C -0.157 4.157 20 C -0.080 4.080 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.119 4.119 25 C -0.116 4.116 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.348 0.652 30 H 0.041 0.959 31 H 0.084 0.916 32 H 0.392 0.608 33 H 0.271 0.729 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.058 0.942 46 H 0.060 0.940 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.461 2.713 22.517 22.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.022 4.022 3 H 0.059 0.941 4 N -0.300 5.300 5 C -0.082 4.082 6 C 0.227 3.773 7 O -0.467 6.467 8 N -0.202 5.202 9 C -0.428 4.428 10 H 0.120 0.880 11 C -0.180 4.180 12 N -0.544 5.544 13 Si 0.757 3.243 14 H -0.204 1.204 15 H -0.210 1.210 16 H -0.194 1.194 17 C -0.106 4.106 18 H 0.097 0.903 19 C -0.214 4.214 20 C -0.099 4.099 21 C -0.157 4.157 22 C -0.157 4.157 23 C -0.157 4.157 24 C -0.157 4.157 25 C -0.153 4.153 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.170 0.830 30 H 0.059 0.941 31 H 0.102 0.898 32 H 0.225 0.775 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.079 0.921 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.858 1.793 22.224 22.627 hybrid contribution 0.895 0.817 -0.714 1.407 sum -2.963 2.610 21.510 21.869 Atomic orbital electron populations 1.21851 0.95010 1.01966 1.01028 1.21570 0.95739 0.95697 0.89211 0.94059 1.60168 1.34887 1.32115 1.02870 1.21703 1.01075 0.93947 0.91447 1.19860 0.84745 0.88198 0.84459 1.90516 1.55220 1.16146 1.84845 1.41870 1.57890 1.12547 1.07903 1.19703 1.39799 0.96513 0.86762 0.87959 1.25258 0.97750 0.95780 0.99217 1.69612 1.48840 1.08971 1.27027 0.85861 0.78880 0.78936 0.80631 1.20403 1.20960 1.19442 1.21306 0.95274 1.00516 0.93532 0.90265 1.22016 0.95621 1.01858 1.01920 1.21198 1.00471 0.94565 0.93641 1.21709 1.00747 0.95633 0.97575 1.21537 1.00632 0.98675 0.94863 1.21529 1.00859 0.95610 0.97658 1.21530 1.00486 0.95808 0.97834 1.21637 1.00832 0.98839 0.94021 0.92218 0.92795 0.92736 0.82999 0.94124 0.89765 0.77489 0.91916 0.92307 0.92395 0.92516 0.90663 0.91683 0.91770 0.92175 0.92336 0.92476 0.92185 0.92158 0.92374 0.92079 0.91794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 8.74 37.16 0.32 -1.39 16 2 C 0.09 1.12 1.85 -67.71 -0.13 1.00 16 3 H 0.04 0.53 6.45 -51.93 -0.33 0.19 16 4 N -0.67 -11.20 5.93 -108.00 -0.64 -11.84 16 5 C 0.05 0.94 5.96 -4.97 -0.03 0.91 16 6 C 0.44 10.74 7.82 -10.98 -0.09 10.66 16 7 O -0.58 -16.24 15.78 5.55 0.09 -16.15 16 8 N -0.57 -14.67 5.29 -10.96 -0.06 -14.73 16 9 C -0.30 -8.47 9.68 -14.93 -0.14 -8.62 16 10 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 11 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 12 N -0.90 -24.93 13.05 55.50 0.72 -24.21 16 13 Si 0.93 21.35 29.55 -169.99 -5.02 16.33 16 14 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 15 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 16 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 17 C -0.09 -0.95 1.88 -90.62 -0.17 -1.12 16 18 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 19 C -0.16 -1.67 8.30 37.16 0.31 -1.36 16 20 C -0.08 -0.72 1.63 -90.62 -0.15 -0.87 16 21 C -0.12 -1.04 4.48 -26.73 -0.12 -1.16 16 22 C -0.12 -0.93 5.92 -26.73 -0.16 -1.08 16 23 C -0.12 -0.86 5.92 -26.73 -0.16 -1.02 16 24 C -0.12 -0.88 5.92 -26.73 -0.16 -1.04 16 25 C -0.12 -0.95 4.94 -26.73 -0.13 -1.09 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.55 6.66 -51.93 -0.35 0.20 16 28 H 0.05 0.72 7.33 -51.93 -0.38 0.34 16 29 H 0.35 6.07 6.17 -39.29 -0.24 5.83 16 30 H 0.04 0.69 8.05 -51.93 -0.42 0.27 16 31 H 0.08 1.46 7.34 -51.93 -0.38 1.08 16 32 H 0.39 9.73 7.90 -40.82 -0.32 9.40 16 33 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 34 H 0.06 0.56 6.54 -51.93 -0.34 0.22 16 35 H 0.06 0.70 6.42 -51.93 -0.33 0.37 16 36 H 0.06 0.58 6.35 -51.93 -0.33 0.25 16 37 H 0.08 0.70 6.25 -51.93 -0.32 0.37 16 38 H 0.06 0.58 6.35 -51.93 -0.33 0.25 16 39 H 0.06 0.60 6.65 -51.93 -0.35 0.26 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.06 0.53 6.54 -51.93 -0.34 0.20 16 LS Contribution 353.22 15.07 5.32 5.32 Total: -1.00 -30.49 353.22 -8.56 -39.05 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: -8.08 Total: 11.93 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: -0.89 Total: -5.70 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: 0.03 Total: -50.78 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: 0.09 Total: -16.15 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.49 -8.56 -39.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185506019.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.186 kcal (2) G-P(sol) polarization free energy of solvation -30.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds