Wall clock time and date at job start Tue Mar 31 2020 05:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47097 * 2 1 4 4 C 1.53002 * 109.47454 * 120.00120 * 2 1 3 5 5 H 1.08996 * 109.46876 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.46969 * 59.99949 * 4 2 1 7 7 N 1.46897 * 109.46561 * 299.99810 * 4 2 1 8 8 C 1.46907 * 110.99810 * 204.99606 * 7 4 2 9 9 C 1.50697 * 109.47002 * 180.02562 * 8 7 4 10 10 O 1.21285 * 120.00390 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99544 * 180.02562 * 9 8 7 12 12 C 1.37099 * 119.99891 * 180.02562 * 11 9 8 13 13 H 1.08006 * 119.99949 * 359.97438 * 12 11 9 14 14 C 1.38948 * 120.00256 * 179.97438 * 12 11 9 15 15 N 1.31407 * 119.99713 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00088 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47080 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.47137 * 120.00514 * 16 14 12 19 19 H 1.48505 * 109.47134 * 240.00092 * 16 14 12 20 20 C 1.52997 * 109.46978 * 240.00199 * 2 1 3 21 21 C 1.53002 * 109.47415 * 59.99902 * 20 2 1 22 22 C 1.53000 * 109.47233 * 180.02562 * 21 20 2 23 23 C 1.52997 * 109.47060 * 299.99657 * 22 21 20 24 24 C 1.52999 * 109.47317 * 59.99960 * 23 22 21 25 25 C 1.52997 * 109.47232 * 179.97438 * 20 2 1 26 26 H 1.09001 * 109.47142 * 60.00035 * 1 2 3 27 27 H 1.09002 * 109.46838 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46698 * 299.99981 * 1 2 3 29 29 H 1.09000 * 109.47054 * 300.00097 * 6 4 2 30 30 H 1.08996 * 109.47452 * 59.99938 * 6 4 2 31 31 H 1.09001 * 109.46997 * 180.02562 * 6 4 2 32 32 H 1.00903 * 110.99994 * 81.05315 * 7 4 2 33 33 H 1.09002 * 109.47139 * 300.00431 * 8 7 4 34 34 H 1.09003 * 109.46772 * 60.00552 * 8 7 4 35 35 H 0.96996 * 120.00540 * 359.97438 * 11 9 8 36 36 H 0.97000 * 120.00124 * 179.97438 * 15 14 12 37 37 H 1.09002 * 109.47497 * 299.99550 * 20 2 1 38 38 H 1.08992 * 109.47063 * 59.99950 * 21 20 2 39 39 H 1.09004 * 109.46733 * 299.99664 * 21 20 2 40 40 H 1.09002 * 109.47398 * 59.99826 * 22 21 20 41 41 H 1.09001 * 109.47194 * 180.02562 * 22 21 20 42 42 H 1.08996 * 109.47853 * 180.02562 * 23 22 21 43 43 H 1.09002 * 109.47153 * 300.00319 * 23 22 21 44 44 H 1.09000 * 109.47486 * 180.02562 * 24 23 22 45 45 H 1.09002 * 109.46716 * 60.00091 * 24 23 22 46 46 H 1.09002 * 109.47153 * 299.99992 * 25 20 2 47 47 H 1.09001 * 109.47289 * 60.00075 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 3.1301 -0.7216 1.2489 6 6 1.5301 -2.1637 1.2492 7 7 1.5505 -0.0287 2.4486 8 6 2.4342 -0.2746 3.5961 9 6 1.9007 0.4496 4.8052 10 8 0.8841 1.1056 4.7196 11 7 2.5533 0.3683 5.9816 12 6 2.0677 1.0267 7.0818 13 1 1.1624 1.6109 7.0056 14 6 2.7401 0.9425 8.2948 15 7 3.8418 0.2322 8.3874 16 14 2.0788 1.8402 9.7936 17 1 0.8347 2.5640 9.4281 18 1 1.7825 0.8586 10.8677 19 1 3.0933 2.8112 10.2766 20 6 2.0400 -0.7212 -1.2493 21 6 1.5300 0.0000 -2.4985 22 6 2.0394 -0.7216 -3.7478 23 6 3.5694 -0.7220 -3.7481 24 6 4.0795 -1.4432 -2.4989 25 6 3.5699 -0.7207 -1.2496 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 0.4401 -2.1637 1.2492 30 1 1.8934 -2.6776 0.3592 31 1 1.8932 -2.6775 2.1394 32 1 0.6011 -0.2978 2.6593 33 1 2.4736 -1.3443 3.8017 34 1 3.4361 0.0887 3.3674 35 1 3.3660 -0.1566 6.0502 36 1 4.3114 0.1737 9.2341 37 1 1.6767 -1.7489 -1.2493 38 1 1.8933 1.0276 -2.4985 39 1 0.4399 0.0000 -2.4985 40 1 1.6758 -1.7491 -3.7476 41 1 1.6765 -0.2075 -4.6378 42 1 3.9325 -1.2357 -4.6383 43 1 3.9331 0.3055 -3.7483 44 1 5.1695 -1.4432 -2.4989 45 1 3.7159 -2.4708 -2.4987 46 1 3.9329 0.3071 -1.2498 47 1 3.9337 -1.2343 -0.3597 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185506034.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:05 Heat of formation + Delta-G solvation = -75.327956 kcal Electronic energy + Delta-G solvation = -22776.059569 eV Core-core repulsion = 19570.958988 eV Total energy + Delta-G solvation = -3205.100580 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.69320 -38.21893 -36.69183 -33.98964 -33.18471 -31.19443 -31.02947 -29.68091 -28.52427 -26.31546 -24.74048 -23.84997 -22.59914 -21.80149 -20.02326 -19.32576 -18.78982 -17.85624 -16.14047 -15.93214 -15.38934 -14.86666 -14.56413 -14.41605 -14.30916 -13.93077 -13.85856 -13.73247 -13.43869 -13.21924 -12.56757 -12.44784 -12.34513 -12.12221 -11.92514 -11.81347 -11.54250 -11.46731 -11.31779 -11.24212 -11.04874 -10.98668 -10.82911 -10.54823 -10.34929 -10.32420 -10.20049 -9.98378 -9.84350 -9.49015 -8.39019 -7.95811 -7.89401 -6.38980 -3.79532 3.18183 3.28417 3.35955 3.95460 4.12871 4.33221 4.52932 4.58557 4.67926 4.92722 4.97822 5.11596 5.19574 5.21213 5.26385 5.29542 5.34137 5.38046 5.40509 5.46983 5.48446 5.60652 5.63918 5.75375 5.80211 5.84851 5.90910 5.95013 5.99678 6.01546 6.02304 6.06060 6.08380 6.14152 6.20502 6.27370 6.32903 6.35060 6.50480 6.60496 7.37424 7.58081 7.79358 8.10183 8.64969 9.21227 9.58219 10.09967 10.79017 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.037841 B = 0.002847 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.758026 B = 9830.913380 C =10170.389472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.072 4.072 3 H 0.076 0.924 4 C 0.086 3.914 5 H 0.077 0.923 6 C -0.188 4.188 7 N -0.662 5.662 8 C 0.050 3.950 9 C 0.442 3.558 10 O -0.583 6.583 11 N -0.566 5.566 12 C -0.297 4.297 13 H 0.103 0.897 14 C 0.021 3.979 15 N -0.903 5.903 16 Si 0.929 3.071 17 H -0.268 1.268 18 H -0.282 1.282 19 H -0.282 1.282 20 C -0.082 4.082 21 C -0.115 4.115 22 C -0.119 4.119 23 C -0.120 4.120 24 C -0.119 4.119 25 C -0.118 4.118 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.348 0.652 33 H 0.041 0.959 34 H 0.084 0.916 35 H 0.392 0.608 36 H 0.270 0.730 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.062 0.938 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.109 -5.814 -21.821 22.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.091 4.091 3 H 0.094 0.906 4 C -0.024 4.024 5 H 0.095 0.905 6 C -0.246 4.246 7 N -0.294 5.294 8 C -0.083 4.083 9 C 0.228 3.772 10 O -0.467 6.467 11 N -0.203 5.203 12 C -0.427 4.427 13 H 0.121 0.879 14 C -0.180 4.180 15 N -0.544 5.544 16 Si 0.756 3.244 17 H -0.192 1.192 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.101 4.101 21 C -0.153 4.153 22 C -0.157 4.157 23 C -0.157 4.157 24 C -0.157 4.157 25 C -0.155 4.155 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.168 0.832 33 H 0.059 0.941 34 H 0.102 0.898 35 H 0.225 0.775 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.081 0.919 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.167 -4.789 -21.851 22.371 hybrid contribution 0.145 -0.911 1.118 1.450 sum -0.022 -5.701 -20.733 21.502 Atomic orbital electron populations 1.21910 0.95456 1.01312 1.02088 1.21102 0.95854 0.99784 0.92368 0.90608 1.21626 0.99372 0.90668 0.90731 0.90516 1.22631 1.01884 0.98323 1.01807 1.60201 1.05986 1.60753 1.02474 1.21698 0.97574 0.97941 0.91043 1.19862 0.86824 0.86350 0.84197 1.90515 1.26356 1.45179 1.84654 1.41882 1.25155 1.45256 1.07982 1.19752 1.09618 1.26579 0.86742 0.87912 1.25257 0.95899 0.97642 0.99244 1.69620 1.17132 1.40651 1.27042 0.85808 0.78921 0.78952 0.80712 1.19228 1.20807 1.20755 1.21253 0.95034 0.99675 0.94125 1.21635 1.00450 0.99353 0.93847 1.21534 0.95618 1.00618 0.97889 1.21535 0.95835 1.00699 0.97643 1.21543 0.99971 0.99309 0.94849 1.21665 0.95474 1.00888 0.97499 0.93014 0.93141 0.91563 0.92152 0.92063 0.92952 0.83172 0.94057 0.89799 0.77500 0.91975 0.91155 0.92052 0.91741 0.92267 0.92409 0.92530 0.92112 0.92312 0.92263 0.91908 0.91726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.22 37.16 0.31 -1.37 16 2 C -0.07 -0.81 1.99 -90.62 -0.18 -0.99 16 3 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 4 C 0.09 1.08 2.07 -67.71 -0.14 0.94 16 5 H 0.08 0.96 6.09 -51.93 -0.32 0.64 16 6 C -0.19 -2.09 8.46 37.16 0.31 -1.78 16 7 N -0.66 -10.87 5.39 -107.99 -0.58 -11.45 16 8 C 0.05 0.91 5.97 -4.97 -0.03 0.88 16 9 C 0.44 10.65 7.82 -10.99 -0.09 10.57 16 10 O -0.58 -16.12 15.78 5.55 0.09 -16.03 16 11 N -0.57 -14.61 5.29 -10.96 -0.06 -14.67 16 12 C -0.30 -8.42 9.68 -14.93 -0.14 -8.57 16 13 H 0.10 3.06 7.16 -52.48 -0.38 2.68 16 14 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 15 N -0.90 -24.88 13.05 55.50 0.72 -24.16 16 16 Si 0.93 21.31 29.55 -169.99 -5.02 16.29 16 17 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 20 C -0.08 -0.75 1.42 -90.62 -0.13 -0.88 16 21 C -0.12 -0.99 4.85 -26.73 -0.13 -1.12 16 22 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 23 C -0.12 -0.90 5.92 -26.73 -0.16 -1.06 16 24 C -0.12 -0.95 5.93 -26.71 -0.16 -1.11 16 25 C -0.12 -1.07 4.85 -26.71 -0.13 -1.20 16 26 H 0.05 0.52 6.43 -51.93 -0.33 0.18 16 27 H 0.05 0.52 6.43 -51.93 -0.33 0.19 16 28 H 0.07 0.87 7.21 -51.93 -0.37 0.50 16 29 H 0.06 0.67 6.42 -51.93 -0.33 0.34 16 30 H 0.06 0.59 6.43 -51.93 -0.33 0.26 16 31 H 0.05 0.62 7.45 -51.93 -0.39 0.23 16 32 H 0.35 5.98 7.42 -39.29 -0.29 5.69 16 33 H 0.04 0.68 7.44 -51.93 -0.39 0.30 16 34 H 0.08 1.42 8.06 -51.93 -0.42 1.00 16 35 H 0.39 9.68 7.90 -40.82 -0.32 9.35 16 36 H 0.27 7.02 8.31 -40.82 -0.34 6.69 16 37 H 0.07 0.65 6.43 -51.93 -0.33 0.32 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.55 6.43 -51.93 -0.33 0.21 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.06 0.61 6.43 -51.93 -0.33 0.27 16 LS Contribution 354.28 15.07 5.34 5.34 Total: -1.00 -30.23 354.28 -8.58 -38.81 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: -8.15 Total: 12.16 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -0.92 Total: -6.28 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: 0.08 Total: -50.28 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: 0.09 Total: -16.03 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.23 -8.58 -38.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185506034.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.517 kcal (2) G-P(sol) polarization free energy of solvation -30.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds