Wall clock time and date at job start Tue Mar 31 2020 05:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.50523 * 2 1 4 4 C 1.53098 * 109.50745 * 239.91227 * 2 1 3 5 5 N 1.47008 * 109.25687 * 183.21504 * 4 2 1 6 6 C 1.46899 * 110.99897 * 182.39269 * 5 4 2 7 7 C 1.53002 * 109.47394 * 170.00198 * 6 5 4 8 8 N 1.46899 * 109.47394 * 180.02562 * 7 6 5 9 9 C 1.46903 * 111.00064 * 189.99823 * 8 7 6 10 10 C 1.50699 * 109.46746 * 75.64965 * 9 8 7 11 11 H 1.07996 * 120.00756 * 355.08815 * 10 9 8 12 12 C 1.37878 * 119.99528 * 175.09023 * 10 9 8 13 13 N 1.31509 * 120.00293 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 120.00015 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47070 * 179.97438 * 14 12 10 16 16 H 1.48502 * 109.46645 * 299.99982 * 14 12 10 17 17 H 1.48498 * 109.47330 * 59.99547 * 14 12 10 18 18 C 1.46902 * 110.99958 * 66.04277 * 8 7 6 19 19 C 1.53000 * 109.46800 * 199.32063 * 18 8 7 20 20 C 1.53002 * 117.49925 * 243.47605 * 19 18 8 21 21 C 1.53001 * 117.49314 * 174.81863 * 19 18 8 22 22 C 1.47019 * 110.75461 * 58.61919 * 5 4 2 23 23 C 1.53098 * 109.25194 * 301.38092 * 22 5 4 24 24 O 1.43008 * 109.50522 * 120.12845 * 2 1 3 25 25 H 1.09003 * 109.46700 * 180.09127 * 1 2 3 26 26 H 1.08996 * 109.46729 * 300.08504 * 1 2 3 27 27 H 1.09000 * 109.46966 * 60.09067 * 1 2 3 28 28 H 1.09004 * 109.50467 * 63.27861 * 4 2 1 29 29 H 1.09004 * 109.50287 * 303.15156 * 4 2 1 30 30 H 1.09004 * 109.47507 * 49.99868 * 6 5 4 31 31 H 1.09003 * 109.46952 * 290.00012 * 6 5 4 32 32 H 1.08998 * 109.47014 * 59.99854 * 7 6 5 33 33 H 1.09003 * 109.46919 * 299.99835 * 7 6 5 34 34 H 1.08999 * 109.46743 * 315.65104 * 9 8 7 35 35 H 1.08999 * 109.46940 * 195.64773 * 9 8 7 36 36 H 0.97001 * 120.00504 * 180.02562 * 13 12 10 37 37 H 1.08994 * 109.47150 * 319.32093 * 18 8 7 38 38 H 1.08997 * 109.46697 * 79.32624 * 18 8 7 39 39 H 1.09001 * 115.55045 * 29.15406 * 19 18 8 40 40 H 1.09002 * 117.49915 * 0.02562 * 20 19 18 41 41 H 1.08995 * 117.49452 * 145.02121 * 20 19 18 42 42 H 1.09007 * 117.50125 * 214.97778 * 21 19 18 43 43 H 1.08996 * 117.50325 * 359.97438 * 21 19 18 44 44 H 1.08998 * 109.50545 * 61.31123 * 22 5 4 45 45 H 1.09000 * 109.50857 * 181.45009 * 22 5 4 46 46 H 1.08999 * 109.50731 * 296.91443 * 23 22 5 47 47 H 1.09002 * 109.53880 * 176.80691 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0413 -0.7235 -1.2487 5 7 3.5093 -0.7880 -1.2047 6 6 4.0447 -1.4259 -2.4148 7 6 5.5645 -1.2538 -2.4523 8 7 6.0998 -1.8912 -3.6627 9 6 7.5668 -1.9557 -3.6190 10 6 7.9934 -3.0492 -2.6738 11 1 7.2532 -3.5843 -2.0975 12 6 9.3290 -3.3666 -2.5449 13 7 10.2304 -2.7155 -3.2470 14 14 9.8580 -4.7226 -1.3739 15 1 11.3351 -4.8677 -1.4196 16 1 9.4365 -4.3760 0.0073 17 1 9.2226 -6.0022 -1.7789 18 6 5.6393 -1.1954 -4.8718 19 6 5.7925 -2.1195 -6.0815 20 6 6.7628 -1.6869 -7.1826 21 6 5.2526 -1.6214 -7.4237 22 6 3.9640 -1.4884 0.0053 23 6 3.4335 -0.7572 1.2413 24 8 2.0076 -0.6766 1.1659 25 1 -0.3633 -1.0277 0.0016 26 1 -0.3633 0.5151 0.8892 27 1 -0.3633 0.5124 -0.8908 28 1 1.7274 -0.1787 -2.1391 29 1 1.6332 -1.7338 -1.2765 30 1 3.6044 -0.9600 -3.2964 31 1 3.7995 -2.4880 -2.4044 32 1 6.0048 -1.7198 -1.5708 33 1 5.8097 -0.1918 -2.4627 34 1 7.9622 -1.0010 -3.2722 35 1 7.9511 -2.1675 -4.6167 36 1 11.1700 -2.9390 -3.1565 37 1 4.5912 -0.9199 -4.7554 38 1 6.2367 -0.2964 -5.0233 39 1 5.7126 -3.1861 -5.8715 40 1 7.2924 -0.7442 -7.0449 41 1 7.3211 -2.4690 -7.6970 42 1 4.8180 -2.3604 -8.0969 43 1 4.7880 -0.6356 -7.4447 44 1 3.5866 -2.5109 -0.0026 45 1 5.0537 -1.5020 0.0302 46 1 3.8534 0.2480 1.2777 47 1 3.7202 -1.3042 2.1395 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191526423.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:59 Heat of formation + Delta-G solvation = -13.464296 kcal Electronic energy + Delta-G solvation = -23055.728499 eV Core-core repulsion = 19853.310528 eV Total energy + Delta-G solvation = -3202.417971 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.69664 -37.89000 -36.23692 -34.87782 -32.89462 -32.49256 -29.58143 -28.14190 -27.62460 -25.44975 -24.20504 -23.16672 -22.00194 -21.49507 -20.54839 -20.25280 -19.47918 -16.49309 -16.43407 -16.18665 -15.56816 -15.41099 -14.95819 -14.63737 -14.57362 -14.23136 -14.05934 -13.50806 -13.24236 -12.84651 -12.72154 -12.48595 -12.28603 -12.02118 -11.83885 -11.71677 -11.41166 -11.21246 -11.17637 -11.07804 -10.81374 -10.69400 -10.57975 -10.50951 -10.20983 -9.94440 -9.83358 -9.56402 -9.33944 -9.12708 -8.39777 -8.27765 -7.25322 -5.99705 -4.00726 3.33682 3.38141 3.40775 3.66083 3.84104 4.22842 4.44236 4.71302 4.86805 4.93803 5.02933 5.06872 5.21506 5.26607 5.33087 5.35643 5.36348 5.43986 5.47417 5.54140 5.58035 5.63527 5.77720 5.79991 5.90018 5.92663 5.94799 5.97458 6.02735 6.05768 6.13527 6.22641 6.30537 6.45572 6.50628 6.57585 6.80572 7.03667 7.10477 7.18395 7.31819 7.38639 7.83383 8.15393 8.24294 8.57040 9.06113 9.62892 11.10770 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012057 B = 0.004892 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.793816 B = 5722.788177 C = 7756.201745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.089 3.911 3 H 0.065 0.935 4 C 0.025 3.975 5 N -0.538 5.538 6 C 0.059 3.941 7 C 0.069 3.931 8 N -0.534 5.534 9 C 0.195 3.805 10 C -0.504 4.504 11 H 0.060 0.940 12 C 0.056 3.944 13 N -0.899 5.899 14 Si 0.895 3.105 15 H -0.288 1.288 16 H -0.278 1.278 17 H -0.277 1.277 18 C 0.083 3.917 19 C -0.128 4.128 20 C -0.178 4.178 21 C -0.191 4.191 22 C 0.014 3.986 23 C 0.065 3.935 24 O -0.387 6.387 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.040 0.960 30 H 0.070 0.930 31 H 0.042 0.958 32 H 0.081 0.919 33 H 0.027 0.973 34 H -0.013 1.013 35 H 0.039 0.961 36 H 0.261 0.739 37 H 0.063 0.937 38 H 0.025 0.975 39 H 0.110 0.890 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.043 0.957 45 H 0.095 0.905 46 H 0.058 0.942 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.977 5.526 1.661 16.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.031 3.969 3 H 0.083 0.917 4 C -0.103 4.103 5 N -0.263 5.263 6 C -0.069 4.069 7 C -0.060 4.060 8 N -0.259 5.259 9 C 0.070 3.930 10 C -0.542 4.542 11 H 0.078 0.922 12 C -0.145 4.145 13 N -0.538 5.538 14 Si 0.723 3.277 15 H -0.214 1.214 16 H -0.203 1.203 17 H -0.203 1.203 18 C -0.045 4.045 19 C -0.146 4.146 20 C -0.215 4.215 21 C -0.228 4.228 22 C -0.114 4.114 23 C -0.011 4.011 24 O -0.306 6.306 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.100 0.900 29 H 0.059 0.941 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.099 0.901 33 H 0.045 0.955 34 H 0.005 0.995 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.044 0.956 39 H 0.129 0.871 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.061 0.939 45 H 0.114 0.886 46 H 0.076 0.924 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -15.881 5.457 1.769 16.885 hybrid contribution 0.760 -0.688 0.271 1.061 sum -15.121 4.768 2.041 15.986 Atomic orbital electron populations 1.21747 0.93086 1.02857 1.02456 1.22136 0.94529 0.95644 0.84599 0.91693 1.22776 0.88534 1.00022 0.98987 1.62170 1.07981 1.53358 1.02806 1.22211 0.96580 0.97212 0.90851 1.21883 0.92111 0.96772 0.95185 1.62045 1.14047 1.50494 0.99313 1.19743 0.79522 0.95533 0.98182 1.21111 0.91691 1.18105 1.23324 0.92206 1.24961 0.96659 0.96665 0.96217 1.69942 1.01267 1.41467 1.41157 0.86616 0.77270 0.82503 0.81327 1.21393 1.20341 1.20262 1.21640 0.98832 0.93723 0.90327 1.22268 1.02834 1.00895 0.88650 1.22965 0.91793 1.02958 1.03800 1.22943 0.97129 1.02139 1.00600 1.22859 1.02192 0.96085 0.90284 1.22668 0.80520 1.00416 0.97540 1.87950 1.21473 1.78418 1.42731 0.91936 0.91719 0.91019 0.90000 0.94129 0.91173 0.93969 0.90075 0.95527 0.99547 0.94290 0.92949 0.91925 0.95634 0.87149 0.89227 0.89206 0.89408 0.89528 0.93909 0.88639 0.92352 0.88503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.57 37.16 0.36 -0.89 16 2 C 0.09 1.00 3.43 -26.68 -0.09 0.91 16 3 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 4 C 0.03 0.31 4.93 -3.71 -0.02 0.29 16 5 N -0.54 -7.64 4.73 -234.30 -1.11 -8.75 16 6 C 0.06 0.92 4.93 -3.82 -0.02 0.91 16 7 C 0.07 1.31 4.72 -3.82 -0.02 1.29 16 8 N -0.53 -11.25 4.36 -236.07 -1.03 -12.28 16 9 C 0.20 5.02 4.57 -4.97 -0.02 5.00 16 10 C -0.50 -14.00 8.61 -34.44 -0.30 -14.30 16 11 H 0.06 1.65 7.65 -52.49 -0.40 1.25 16 12 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 13 N -0.90 -26.60 13.29 55.43 0.74 -25.86 16 14 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 C 0.08 1.50 5.11 -3.82 -0.02 1.48 16 19 C -0.13 -2.18 5.14 -90.62 -0.47 -2.65 16 20 C -0.18 -2.86 10.09 -26.69 -0.27 -3.13 16 21 C -0.19 -2.63 10.25 -26.69 -0.27 -2.90 16 22 C 0.01 0.19 5.44 -3.71 -0.02 0.17 16 23 C 0.07 0.80 7.01 37.21 0.26 1.06 16 24 O -0.39 -5.05 10.47 -35.23 -0.37 -5.42 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.88 8.09 -51.93 -0.42 0.46 16 29 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 1.04 6.15 -51.93 -0.32 0.72 16 31 H 0.04 0.70 8.12 -51.93 -0.42 0.28 16 32 H 0.08 1.68 5.69 -51.93 -0.30 1.38 16 33 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16 34 H -0.01 -0.37 8.00 -51.93 -0.42 -0.78 16 35 H 0.04 1.08 7.21 -51.93 -0.37 0.70 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.06 1.00 5.88 -51.93 -0.31 0.69 16 38 H 0.03 0.48 7.74 -51.93 -0.40 0.08 16 39 H 0.11 2.05 8.14 -51.93 -0.42 1.63 16 40 H 0.09 1.46 8.03 -51.93 -0.42 1.04 16 41 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 42 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.10 1.41 6.38 -51.93 -0.33 1.08 16 46 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 366.02 15.07 5.52 5.52 Total: -1.00 -29.69 366.02 -11.00 -40.69 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -8.73 Total: 0.81 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: -1.00 Total: -11.30 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: -1.40 Total: -46.89 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: -0.37 Total: -5.42 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.69 -11.00 -40.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191526423.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.223 kcal (2) G-P(sol) polarization free energy of solvation -29.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds