Wall clock time and date at job start Tue Mar 31 2020 05:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.51068 * 2 1 4 4 C 1.53094 * 109.54180 * 120.11331 * 2 1 3 5 5 N 1.47013 * 109.25988 * 176.80181 * 4 2 1 6 6 C 1.46896 * 111.00087 * 177.60101 * 5 4 2 7 7 C 1.53001 * 109.47179 * 189.67939 * 6 5 4 8 8 N 1.46906 * 109.47356 * 174.58619 * 7 6 5 9 9 C 1.46901 * 110.99814 * 75.65098 * 8 7 6 10 10 C 1.50693 * 109.47135 * 190.00151 * 9 8 7 11 11 H 1.07998 * 120.00326 * 0.02562 * 10 9 8 12 12 C 1.37881 * 120.00022 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99884 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 120.00143 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47051 * 60.00208 * 14 12 10 16 16 H 1.48501 * 109.47393 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47552 * 300.00383 * 14 12 10 18 18 C 1.46892 * 111.00164 * 199.60640 * 8 7 6 19 19 C 1.53011 * 109.47064 * 75.47945 * 18 8 7 20 20 C 1.52993 * 117.49682 * 243.47721 * 19 18 8 21 21 C 1.52995 * 117.49847 * 174.85426 * 19 18 8 22 22 C 1.47006 * 110.75176 * 301.38168 * 5 4 2 23 23 C 1.53092 * 109.25979 * 58.61526 * 22 5 4 24 24 O 1.43010 * 109.25920 * 303.14829 * 23 22 5 25 25 H 1.08997 * 109.47432 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47222 * 300.00255 * 1 2 3 27 27 H 1.09006 * 109.47075 * 60.00006 * 1 2 3 28 28 H 1.09003 * 109.50284 * 296.73476 * 4 2 1 29 29 H 1.08994 * 109.51143 * 56.86280 * 4 2 1 30 30 H 1.08998 * 109.47728 * 309.68110 * 6 5 4 31 31 H 1.09001 * 109.47381 * 69.68404 * 6 5 4 32 32 H 1.08994 * 109.47495 * 294.59243 * 7 6 5 33 33 H 1.09000 * 109.46893 * 54.59353 * 7 6 5 34 34 H 1.09003 * 109.47036 * 310.00835 * 9 8 7 35 35 H 1.09001 * 109.46759 * 69.99867 * 9 8 7 36 36 H 0.96997 * 119.99950 * 179.97438 * 13 12 10 37 37 H 1.09002 * 109.47377 * 195.47558 * 18 8 7 38 38 H 1.08998 * 109.47307 * 315.47832 * 18 8 7 39 39 H 1.08996 * 115.54513 * 29.18170 * 19 18 8 40 40 H 1.09003 * 117.50219 * 359.97438 * 20 19 18 41 41 H 1.08999 * 117.50203 * 145.01743 * 20 19 18 42 42 H 1.08999 * 117.50142 * 214.98194 * 21 19 18 43 43 H 1.09004 * 117.49978 * 0.02562 * 21 19 18 44 44 H 1.08998 * 109.50632 * 298.67775 * 22 5 4 45 45 H 1.09001 * 109.54400 * 178.56932 * 22 5 4 46 46 H 1.09003 * 109.51113 * 183.21368 * 23 22 5 47 47 H 1.08997 * 109.51029 * 63.08852 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0421 -0.7238 1.2480 5 7 3.5102 -0.7876 1.2036 6 6 4.0463 -1.4258 2.4131 7 6 5.5669 -1.2597 2.4461 8 7 6.0892 -1.7825 3.7158 9 6 6.1038 -3.2515 3.7140 10 6 6.4078 -3.7525 5.1023 11 1 6.5732 -3.0500 5.9058 12 6 6.4748 -5.1078 5.3469 13 7 6.2739 -5.9632 4.3683 14 14 6.8523 -5.7288 7.0676 15 1 5.8094 -5.2458 8.0081 16 1 6.8669 -7.2138 7.0658 17 1 8.1799 -5.2207 7.4972 18 6 7.4263 -1.2431 3.9970 19 6 7.3024 0.2080 4.4663 20 6 7.9365 1.2902 3.5902 21 6 8.5800 0.9132 4.9261 22 6 3.9647 -1.4871 -0.0069 23 6 3.4334 -0.7556 -1.2424 24 8 2.0075 -0.6759 -1.1665 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.7282 -0.1797 2.1388 29 1 1.6346 -1.7344 1.2757 30 1 3.6104 -0.9567 3.2952 31 1 3.7969 -2.4868 2.4052 32 1 6.0106 -1.8100 1.6166 33 1 5.8190 -0.2030 2.3573 34 1 5.1293 -3.6241 3.3984 35 1 6.8693 -3.6063 3.0239 36 1 6.3214 -6.9166 4.5403 37 1 7.9014 -1.8379 4.7772 38 1 8.0315 -1.2817 3.0914 39 1 6.3759 0.4574 4.9833 40 1 8.4422 0.9685 2.6798 41 1 7.4271 2.2520 3.5306 42 1 8.4939 1.6268 5.7455 43 1 9.5087 0.3435 4.8940 44 1 3.5880 -2.5098 0.0007 45 1 5.0543 -1.5007 -0.0326 46 1 3.7200 -1.3027 -2.1406 47 1 3.8528 0.2498 -1.2786 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191526436.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:01 Heat of formation + Delta-G solvation = -15.862177 kcal Electronic energy + Delta-G solvation = -23065.685026 eV Core-core repulsion = 19863.163076 eV Total energy + Delta-G solvation = -3202.521951 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.66708 -37.89301 -36.22634 -34.91562 -32.87291 -32.47728 -29.65624 -28.18248 -27.39154 -25.56157 -24.03316 -23.22498 -22.13889 -21.63378 -20.47353 -20.09492 -19.53402 -16.60553 -16.41853 -16.19982 -15.44508 -15.21942 -14.99819 -14.72421 -14.69857 -14.11773 -14.00958 -13.62677 -13.18766 -12.84571 -12.66866 -12.42618 -12.25788 -11.96602 -11.74000 -11.66251 -11.62297 -11.24438 -11.19308 -10.92882 -10.89850 -10.69432 -10.59394 -10.53906 -10.30477 -10.08926 -9.65403 -9.55881 -9.46920 -9.14318 -8.45183 -8.22217 -7.25282 -6.04094 -4.05320 3.32502 3.36685 3.39635 3.67696 3.87691 4.16809 4.42343 4.75615 4.85775 4.97888 5.04031 5.09778 5.21361 5.22571 5.29379 5.32021 5.38267 5.46176 5.49723 5.54167 5.63657 5.66147 5.78094 5.84015 5.85441 5.90861 5.92596 6.01204 6.04896 6.14047 6.14394 6.30755 6.35941 6.37549 6.45065 6.58086 6.83668 7.07525 7.14115 7.19487 7.30500 7.34128 7.80511 8.09077 8.21313 8.54733 9.02779 9.59042 11.06725 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013198 B = 0.004471 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.962856 B = 6260.926236 C = 7708.103586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.090 3.910 3 H 0.065 0.935 4 C 0.025 3.975 5 N -0.537 5.537 6 C 0.063 3.937 7 C 0.064 3.936 8 N -0.535 5.535 9 C 0.193 3.807 10 C -0.508 4.508 11 H 0.064 0.936 12 C 0.056 3.944 13 N -0.899 5.899 14 Si 0.897 3.103 15 H -0.276 1.276 16 H -0.288 1.288 17 H -0.277 1.277 18 C 0.094 3.906 19 C -0.130 4.130 20 C -0.190 4.190 21 C -0.185 4.185 22 C 0.014 3.986 23 C 0.067 3.933 24 O -0.386 6.386 25 H 0.062 0.938 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.084 0.916 29 H 0.042 0.958 30 H 0.081 0.919 31 H 0.040 0.960 32 H 0.021 0.979 33 H 0.070 0.930 34 H 0.030 0.970 35 H -0.012 1.012 36 H 0.261 0.739 37 H 0.090 0.910 38 H 0.020 0.980 39 H 0.108 0.892 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.043 0.957 45 H 0.088 0.912 46 H 0.095 0.905 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.067 13.298 -7.884 16.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.032 3.968 3 H 0.083 0.917 4 C -0.104 4.104 5 N -0.263 5.263 6 C -0.064 4.064 7 C -0.065 4.065 8 N -0.259 5.259 9 C 0.068 3.932 10 C -0.547 4.547 11 H 0.082 0.918 12 C -0.145 4.145 13 N -0.539 5.539 14 Si 0.725 3.275 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.202 1.202 18 C -0.034 4.034 19 C -0.149 4.149 20 C -0.227 4.227 21 C -0.223 4.223 22 C -0.115 4.115 23 C -0.010 4.010 24 O -0.306 6.306 25 H 0.081 0.919 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.103 0.897 29 H 0.060 0.940 30 H 0.100 0.900 31 H 0.058 0.942 32 H 0.039 0.961 33 H 0.088 0.912 34 H 0.048 0.952 35 H 0.006 0.994 36 H 0.071 0.929 37 H 0.108 0.892 38 H 0.038 0.962 39 H 0.126 0.874 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.061 0.939 45 H 0.106 0.894 46 H 0.113 0.887 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.332 13.634 -7.700 16.541 hybrid contribution 0.694 -1.537 0.508 1.762 sum -4.638 12.096 -7.192 14.817 Atomic orbital electron populations 1.21748 0.93042 1.02947 1.02448 1.22149 0.94583 0.95555 0.84543 0.91715 1.22776 0.88402 1.00208 0.98984 1.62199 1.08177 1.53164 1.02725 1.22091 0.95959 0.97352 0.91007 1.21935 0.93552 0.99644 0.91359 1.61912 1.22597 1.11416 1.29990 1.19748 0.96407 0.80033 0.96997 1.21144 1.47446 0.91290 0.94772 0.91797 1.24983 0.95542 0.96877 0.97128 1.69949 1.50152 1.02156 1.31630 0.86580 0.78935 0.77441 0.84583 1.20162 1.21401 1.20245 1.21549 0.90446 0.92122 0.99322 1.22443 0.96655 0.93598 1.02223 1.23000 1.05068 1.00064 0.94551 1.22897 0.97746 1.03974 0.97638 1.22825 1.01551 0.96382 0.90706 1.22635 0.80790 1.00183 0.97408 1.87954 1.21268 1.78519 1.42810 0.91876 0.90937 0.91765 0.89730 0.93991 0.90040 0.94206 0.96128 0.91168 0.95199 0.99383 0.92898 0.89181 0.96213 0.87396 0.89474 0.89531 0.89346 0.89159 0.93903 0.89398 0.88687 0.92485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.57 37.16 0.36 -0.98 16 2 C 0.09 1.04 3.42 -26.68 -0.09 0.95 16 3 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 4 C 0.02 0.32 4.93 -3.71 -0.02 0.30 16 5 N -0.54 -7.85 4.73 -234.33 -1.11 -8.96 16 6 C 0.06 1.08 4.98 -3.83 -0.02 1.06 16 7 C 0.06 1.15 4.60 -3.82 -0.02 1.14 16 8 N -0.53 -11.24 4.36 -236.07 -1.03 -12.27 16 9 C 0.19 4.95 4.55 -4.98 -0.02 4.93 16 10 C -0.51 -14.05 8.24 -34.44 -0.28 -14.34 16 11 H 0.06 1.75 7.31 -52.49 -0.38 1.37 16 12 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 13 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 14 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 C 0.09 1.81 5.07 -3.82 -0.02 1.79 16 19 C -0.13 -2.08 5.15 -90.62 -0.47 -2.55 16 20 C -0.19 -2.55 10.09 -26.74 -0.27 -2.82 16 21 C -0.18 -2.52 10.25 -26.73 -0.27 -2.80 16 22 C 0.01 0.19 5.43 -3.72 -0.02 0.17 16 23 C 0.07 0.79 7.01 37.20 0.26 1.05 16 24 O -0.39 -5.12 10.47 -35.23 -0.37 -5.48 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 1.01 8.09 -51.93 -0.42 0.59 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 1.40 8.04 -51.93 -0.42 0.99 16 31 H 0.04 0.77 6.94 -51.93 -0.36 0.41 16 32 H 0.02 0.39 6.63 -51.93 -0.34 0.04 16 33 H 0.07 1.19 7.21 -51.93 -0.37 0.82 16 34 H 0.03 0.82 6.72 -51.93 -0.35 0.47 16 35 H -0.01 -0.32 8.12 -51.93 -0.42 -0.74 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.09 1.93 6.58 -51.93 -0.34 1.59 16 38 H 0.02 0.37 7.74 -51.93 -0.40 -0.03 16 39 H 0.11 1.80 8.14 -51.93 -0.42 1.38 16 40 H 0.09 1.16 8.03 -51.93 -0.42 0.74 16 41 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.09 1.21 6.49 -51.93 -0.34 0.87 16 46 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 366.36 15.07 5.52 5.52 Total: -1.00 -29.39 366.36 -11.03 -40.42 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -8.78 Total: 0.73 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: -0.98 Total: -10.62 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: -1.40 Total: -47.08 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: -0.37 Total: -5.48 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.39 -11.03 -40.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191526436.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.561 kcal (2) G-P(sol) polarization free energy of solvation -29.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds