Wall clock time and date at job start Tue Mar 31 2020 05:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46493 * 109.47367 * 2 1 4 4 C 1.47242 * 120.07782 * 270.02127 * 3 2 1 5 5 C 1.53153 * 108.40043 * 249.95679 * 4 3 2 6 6 C 1.51685 * 110.74720 * 274.40422 * 5 4 3 7 7 N 1.45760 * 113.93328 * 66.77644 * 6 5 4 8 8 C 1.46903 * 110.99693 * 167.26076 * 7 6 5 9 9 C 1.52997 * 109.46963 * 216.25508 * 8 7 6 10 10 C 1.53003 * 109.46886 * 180.77935 * 9 8 7 11 11 C 1.52990 * 109.47491 * 300.78190 * 9 8 7 12 12 C 1.53002 * 109.46747 * 60.78795 * 9 8 7 13 13 C 1.50702 * 109.46915 * 179.97438 * 12 9 8 14 14 H 1.08007 * 120.00159 * 359.97438 * 13 12 9 15 15 C 1.37875 * 120.00175 * 179.97438 * 13 12 9 16 16 N 1.31516 * 119.99933 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00061 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47608 * 89.99997 * 17 15 13 19 19 H 1.48507 * 109.47197 * 210.00323 * 17 15 13 20 20 H 1.48501 * 109.47022 * 329.99940 * 17 15 13 21 21 C 1.46870 * 112.43905 * 292.27763 * 7 6 5 22 22 C 1.33621 * 120.07657 * 90.00066 * 3 2 1 23 23 O 1.21281 * 119.87893 * 0.54039 * 22 3 2 24 24 H 1.09006 * 109.47107 * 299.99796 * 1 2 3 25 25 H 1.08998 * 109.47091 * 59.99558 * 1 2 3 26 26 H 1.09004 * 109.47350 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47170 * 239.99451 * 2 1 3 28 28 H 1.09007 * 109.47029 * 120.00158 * 2 1 3 29 29 H 1.09007 * 109.67620 * 9.69779 * 4 3 2 30 30 H 1.09000 * 109.68028 * 130.23915 * 4 3 2 31 31 H 1.09003 * 109.21375 * 154.08236 * 5 4 3 32 32 H 1.08995 * 109.22960 * 34.73772 * 5 4 3 33 33 H 1.08996 * 108.59374 * 305.61859 * 6 5 4 34 34 H 1.08999 * 108.58917 * 187.92504 * 6 5 4 35 35 H 1.08999 * 109.47182 * 336.25976 * 8 7 6 36 36 H 1.09004 * 109.46851 * 96.25351 * 8 7 6 37 37 H 1.09003 * 109.47171 * 54.14132 * 10 9 8 38 38 H 1.09001 * 109.47078 * 174.14227 * 10 9 8 39 39 H 1.09000 * 109.47226 * 294.13928 * 10 9 8 40 40 H 1.08999 * 109.47310 * 68.52588 * 11 9 8 41 41 H 1.09002 * 109.47233 * 188.52931 * 11 9 8 42 42 H 1.09003 * 109.47310 * 308.52883 * 11 9 8 43 43 H 1.08998 * 109.46650 * 299.98950 * 12 9 8 44 44 H 1.08998 * 109.47723 * 59.99807 * 12 9 8 45 45 H 0.96990 * 120.00126 * 179.97438 * 16 15 13 46 46 H 1.08999 * 109.60429 * 205.54354 * 21 7 6 47 47 H 1.09005 * 109.60016 * 326.02573 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2639 2.0770 -1.2741 5 6 3.7754 2.2567 -1.4434 6 6 4.2489 3.5152 -0.7414 7 7 4.1322 3.4618 0.7106 8 6 4.8735 4.5634 1.3391 9 6 5.5027 4.0749 2.6453 10 6 6.2586 5.2275 3.3096 11 6 4.4037 3.5766 3.5857 12 6 6.4754 2.9322 2.3466 13 6 7.0957 2.4514 3.6332 14 1 6.8237 2.9148 4.5701 15 6 8.0104 1.4200 3.6142 16 7 8.3413 0.8554 2.4734 17 14 8.7798 0.8245 5.2088 18 1 7.9442 -0.2581 5.7877 19 1 10.1441 0.3049 4.9365 20 1 8.8628 1.9533 6.1701 21 6 2.7342 3.4440 1.1604 22 6 2.2416 2.0125 1.1563 23 8 2.0485 1.4367 2.2061 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.8701 1.4828 -2.0988 30 1 1.7779 3.0525 -1.2592 31 1 4.0116 2.3276 -2.5052 32 1 4.2892 1.3941 -1.0190 33 1 3.6625 4.3583 -1.1064 34 1 5.2940 3.6851 -1.0000 35 1 5.6577 4.9056 0.6637 36 1 4.1910 5.3868 1.5501 37 1 5.5900 6.0802 3.4276 38 1 6.6185 4.9097 4.2882 39 1 7.1058 5.5135 2.6862 40 1 3.9660 2.6638 3.1816 41 1 4.8310 3.3711 4.5672 42 1 3.6311 4.3398 3.6784 43 1 5.9370 2.1112 1.8734 44 1 7.2585 3.2873 1.6767 45 1 8.9851 0.1300 2.4600 46 1 2.6697 3.8500 2.1699 47 1 2.1246 4.0425 0.4834 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191540407.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:14 Heat of formation + Delta-G solvation = -36.844697 kcal Electronic energy + Delta-G solvation = -24370.699023 eV Core-core repulsion = 21167.267202 eV Total energy + Delta-G solvation = -3203.431821 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.27641 -37.89745 -36.30347 -34.97434 -32.45339 -31.71033 -30.63464 -27.77623 -27.04417 -26.28426 -25.82193 -23.84257 -22.92651 -22.52375 -20.72983 -18.71514 -17.85775 -17.20193 -16.48717 -16.02886 -15.31289 -14.97073 -14.56532 -14.25696 -14.11138 -13.80336 -13.51126 -13.33232 -12.99204 -12.84849 -12.48202 -12.46491 -12.16080 -12.04951 -11.81196 -11.59967 -11.30075 -11.20133 -11.04161 -10.89777 -10.86104 -10.79876 -10.62164 -10.28519 -10.17859 -10.03082 -9.60585 -9.42186 -8.88449 -8.67528 -8.55532 -8.15616 -7.81178 -5.80481 -3.78740 2.87223 3.17086 3.43093 3.48971 3.51719 4.21663 4.61724 4.69427 4.84216 4.88835 5.04974 5.15437 5.25908 5.34314 5.36155 5.45586 5.50499 5.55719 5.61009 5.69861 5.73097 5.78575 5.84145 5.99788 6.00901 6.07140 6.14409 6.21525 6.31778 6.36402 6.47946 6.57719 6.66497 6.88052 6.96854 7.10211 7.33715 7.43816 7.47059 7.56389 7.61002 7.91730 8.14546 8.29978 8.51171 8.67501 9.27866 9.82612 11.31080 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016953 B = 0.005475 C = 0.004962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.228197 B = 5113.352408 C = 5641.893334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.110 3.890 3 N -0.611 5.611 4 C 0.113 3.887 5 C -0.141 4.141 6 C 0.062 3.938 7 N -0.523 5.523 8 C 0.075 3.925 9 C -0.058 4.058 10 C -0.126 4.126 11 C -0.126 4.126 12 C 0.047 3.953 13 C -0.504 4.504 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.882 3.118 18 H -0.283 1.283 19 H -0.289 1.289 20 H -0.276 1.276 21 C 0.037 3.963 22 C 0.531 3.469 23 O -0.536 6.536 24 H 0.058 0.942 25 H 0.051 0.949 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.023 0.977 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.030 0.970 37 H 0.027 0.973 38 H 0.062 0.938 39 H 0.044 0.956 40 H 0.067 0.933 41 H 0.053 0.947 42 H 0.020 0.980 43 H 0.031 0.969 44 H 0.005 0.995 45 H 0.256 0.744 46 H 0.112 0.888 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.967 5.149 -10.835 18.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.013 4.013 3 N -0.345 5.345 4 C -0.010 4.010 5 C -0.180 4.180 6 C -0.066 4.066 7 N -0.248 5.248 8 C -0.051 4.051 9 C -0.059 4.059 10 C -0.184 4.184 11 C -0.183 4.183 12 C 0.010 3.990 13 C -0.542 4.542 14 H 0.072 0.928 15 C -0.145 4.145 16 N -0.538 5.538 17 Si 0.711 3.289 18 H -0.209 1.209 19 H -0.215 1.215 20 H -0.201 1.201 21 C -0.093 4.093 22 C 0.318 3.682 23 O -0.411 6.411 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.041 0.959 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.049 0.951 37 H 0.046 0.954 38 H 0.081 0.919 39 H 0.064 0.936 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.039 0.961 43 H 0.049 0.951 44 H 0.023 0.977 45 H 0.065 0.935 46 H 0.130 0.870 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.751 4.278 -10.198 17.646 hybrid contribution 0.231 0.286 0.428 0.564 sum -13.520 4.564 -9.770 17.294 Atomic orbital electron populations 1.22126 0.96286 1.01924 1.01959 1.21399 0.93845 0.82744 1.03319 1.47934 1.66215 1.14012 1.06347 1.21821 0.96247 0.97287 0.85649 1.21889 0.95433 1.00206 1.00448 1.21661 1.01712 0.95900 0.87294 1.60576 1.09602 1.47831 1.06768 1.22317 0.95839 0.89476 0.97507 1.20648 0.96237 0.97219 0.91794 1.21738 0.98719 0.96281 1.01641 1.21865 0.96507 0.99930 1.00041 1.19000 0.92043 0.92010 0.95969 1.21341 1.22695 1.16368 0.93809 0.92778 1.24967 0.97133 0.96861 0.95522 1.69972 1.34074 1.25109 1.24670 0.86751 0.78517 0.79065 0.84581 1.20907 1.21547 1.20083 1.22677 0.89953 0.93158 1.03537 1.20512 0.75877 0.88810 0.82985 1.90695 1.51635 1.67506 1.31278 0.92325 0.92960 0.91825 0.90870 0.89660 0.89966 0.91336 0.90376 0.89683 0.95866 0.90308 0.91548 0.95127 0.95425 0.91895 0.93644 0.91384 0.92822 0.96076 0.95052 0.97690 0.93479 0.86976 0.93120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 10.24 37.16 0.38 -1.30 16 2 C 0.11 1.35 6.08 -4.05 -0.02 1.32 16 3 N -0.61 -8.28 2.48 -173.03 -0.43 -8.71 16 4 C 0.11 1.13 5.93 -3.56 -0.02 1.11 16 5 C -0.14 -1.61 5.86 -27.32 -0.16 -1.77 16 6 C 0.06 0.81 4.86 -5.11 -0.02 0.79 16 7 N -0.52 -8.51 3.29 -237.47 -0.78 -9.29 16 8 C 0.08 1.26 4.19 -3.82 -0.02 1.25 16 9 C -0.06 -1.19 0.60 -154.51 -0.09 -1.29 16 10 C -0.13 -2.40 8.10 37.16 0.30 -2.10 16 11 C -0.13 -2.61 6.52 37.15 0.24 -2.37 16 12 C 0.05 1.21 3.88 -27.88 -0.11 1.11 16 13 C -0.50 -14.37 7.80 -34.44 -0.27 -14.64 16 14 H 0.05 1.52 5.73 -52.48 -0.30 1.22 16 15 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.73 13.29 55.43 0.74 -26.99 16 17 Si 0.88 22.55 29.54 -169.99 -5.02 17.53 16 18 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 19 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 21 C 0.04 0.57 4.04 -4.65 -0.02 0.55 16 22 C 0.53 9.01 7.02 -11.16 -0.08 8.93 16 23 O -0.54 -11.26 15.76 5.56 0.09 -11.17 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.74 8.03 -51.93 -0.42 0.32 16 28 H 0.08 1.28 7.40 -51.93 -0.38 0.89 16 29 H 0.08 0.62 7.92 -51.93 -0.41 0.21 16 30 H 0.07 0.61 6.76 -51.93 -0.35 0.26 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.08 1.26 8.05 -51.93 -0.42 0.84 16 33 H 0.02 0.25 7.78 -51.93 -0.40 -0.15 16 34 H 0.08 1.08 7.61 -51.93 -0.40 0.69 16 35 H 0.07 1.08 7.38 -51.93 -0.38 0.70 16 36 H 0.03 0.45 7.73 -51.93 -0.40 0.05 16 37 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 1.30 6.80 -51.93 -0.35 0.94 16 39 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 1.55 5.79 -51.93 -0.30 1.25 16 41 H 0.05 1.18 6.89 -51.93 -0.36 0.82 16 42 H 0.02 0.37 7.09 -51.93 -0.37 0.00 16 43 H 0.03 0.90 7.63 -51.93 -0.40 0.51 16 44 H 0.00 0.13 8.14 -51.93 -0.42 -0.29 16 45 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 46 H 0.11 1.81 4.96 -51.93 -0.26 1.55 16 47 H 0.05 0.62 6.66 -51.93 -0.35 0.27 16 LS Contribution 351.76 15.07 5.30 5.30 Total: -1.00 -33.59 351.76 -8.43 -42.02 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -8.34 Total: -1.80 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: 0.01 Total: -6.90 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: -0.47 Total: -44.99 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.09 Total: -11.17 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.59 -8.43 -42.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191540407.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.177 kcal (2) G-P(sol) polarization free energy of solvation -33.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds