Wall clock time and date at job start Tue Mar 31 2020 05:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46493 * 109.47367 * 2 1 4 4 C 1.47242 * 120.07782 * 270.02127 * 3 2 1 5 5 C 1.53153 * 108.40043 * 249.95679 * 4 3 2 6 6 C 1.51685 * 110.74720 * 274.40422 * 5 4 3 7 7 N 1.45760 * 113.93328 * 66.77644 * 6 5 4 8 8 C 1.46903 * 110.99693 * 167.26076 * 7 6 5 9 9 C 1.52997 * 109.46963 * 216.25508 * 8 7 6 10 10 C 1.53003 * 109.46886 * 180.77935 * 9 8 7 11 11 C 1.52990 * 109.47491 * 300.78190 * 9 8 7 12 12 C 1.53002 * 109.46747 * 60.78795 * 9 8 7 13 13 C 1.50702 * 109.46915 * 179.97438 * 12 9 8 14 14 H 1.08007 * 120.00159 * 359.97438 * 13 12 9 15 15 C 1.37875 * 120.00175 * 179.97438 * 13 12 9 16 16 N 1.31516 * 119.99933 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00061 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47608 * 89.99997 * 17 15 13 19 19 H 1.48507 * 109.47197 * 210.00323 * 17 15 13 20 20 H 1.48501 * 109.47022 * 329.99940 * 17 15 13 21 21 C 1.46870 * 112.43905 * 292.27763 * 7 6 5 22 22 C 1.33621 * 120.07657 * 90.00066 * 3 2 1 23 23 O 1.21281 * 119.87893 * 0.54039 * 22 3 2 24 24 H 1.09006 * 109.47107 * 299.99796 * 1 2 3 25 25 H 1.08998 * 109.47091 * 59.99558 * 1 2 3 26 26 H 1.09004 * 109.47350 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47170 * 239.99451 * 2 1 3 28 28 H 1.09007 * 109.47029 * 120.00158 * 2 1 3 29 29 H 1.09007 * 109.67620 * 9.69779 * 4 3 2 30 30 H 1.09000 * 109.68028 * 130.23915 * 4 3 2 31 31 H 1.09003 * 109.21375 * 154.08236 * 5 4 3 32 32 H 1.08995 * 109.22960 * 34.73772 * 5 4 3 33 33 H 1.08996 * 108.59374 * 305.61859 * 6 5 4 34 34 H 1.08999 * 108.58917 * 187.92504 * 6 5 4 35 35 H 1.08999 * 109.47182 * 336.25976 * 8 7 6 36 36 H 1.09004 * 109.46851 * 96.25351 * 8 7 6 37 37 H 1.09003 * 109.47171 * 54.14132 * 10 9 8 38 38 H 1.09001 * 109.47078 * 174.14227 * 10 9 8 39 39 H 1.09000 * 109.47226 * 294.13928 * 10 9 8 40 40 H 1.08999 * 109.47310 * 68.52588 * 11 9 8 41 41 H 1.09002 * 109.47233 * 188.52931 * 11 9 8 42 42 H 1.09003 * 109.47310 * 308.52883 * 11 9 8 43 43 H 1.08998 * 109.46650 * 299.98950 * 12 9 8 44 44 H 1.08998 * 109.47723 * 59.99807 * 12 9 8 45 45 H 0.96990 * 120.00126 * 179.97438 * 16 15 13 46 46 H 1.08999 * 109.60429 * 205.54354 * 21 7 6 47 47 H 1.09005 * 109.60016 * 326.02573 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2639 2.0770 -1.2741 5 6 3.7754 2.2567 -1.4434 6 6 4.2489 3.5152 -0.7414 7 7 4.1322 3.4618 0.7106 8 6 4.8735 4.5634 1.3391 9 6 5.5027 4.0749 2.6453 10 6 6.2586 5.2275 3.3096 11 6 4.4037 3.5766 3.5857 12 6 6.4754 2.9322 2.3466 13 6 7.0957 2.4514 3.6332 14 1 6.8237 2.9148 4.5701 15 6 8.0104 1.4200 3.6142 16 7 8.3413 0.8554 2.4734 17 14 8.7798 0.8245 5.2088 18 1 7.9442 -0.2581 5.7877 19 1 10.1441 0.3049 4.9365 20 1 8.8628 1.9533 6.1701 21 6 2.7342 3.4440 1.1604 22 6 2.2416 2.0125 1.1563 23 8 2.0485 1.4367 2.2061 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.8701 1.4828 -2.0988 30 1 1.7779 3.0525 -1.2592 31 1 4.0116 2.3276 -2.5052 32 1 4.2892 1.3941 -1.0190 33 1 3.6625 4.3583 -1.1064 34 1 5.2940 3.6851 -1.0000 35 1 5.6577 4.9056 0.6637 36 1 4.1910 5.3868 1.5501 37 1 5.5900 6.0802 3.4276 38 1 6.6185 4.9097 4.2882 39 1 7.1058 5.5135 2.6862 40 1 3.9660 2.6638 3.1816 41 1 4.8310 3.3711 4.5672 42 1 3.6311 4.3398 3.6784 43 1 5.9370 2.1112 1.8734 44 1 7.2585 3.2873 1.6767 45 1 8.9851 0.1300 2.4600 46 1 2.6697 3.8500 2.1699 47 1 2.1246 4.0425 0.4834 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191540407.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:13 Heat of formation + Delta-G solvation = -58.630045 kcal Electronic energy + Delta-G solvation = -24371.643706 eV Core-core repulsion = 21167.267202 eV Total energy + Delta-G solvation = -3204.376505 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.45412 -39.30616 -37.58423 -36.35072 -34.41371 -32.97559 -31.70717 -29.17153 -28.94716 -27.76492 -27.01486 -25.35678 -24.38457 -23.87938 -21.77341 -19.83124 -19.54165 -18.43839 -18.13558 -17.60338 -16.68775 -16.34801 -16.16276 -15.56050 -15.32392 -15.03240 -14.74108 -14.67601 -14.46476 -14.14243 -14.00020 -13.74650 -13.44691 -13.39214 -13.05719 -13.00316 -12.84727 -12.72144 -12.51712 -12.41048 -12.21196 -12.20448 -12.09844 -11.87372 -11.86532 -11.59449 -11.25957 -10.90948 -10.71248 -10.64047 -10.44071 -9.64851 -9.00162 -8.09273 -6.14499 1.36488 1.38757 1.47986 1.62559 2.15383 2.44790 3.07449 3.24113 3.65060 3.91216 3.99243 4.00785 4.16724 4.22349 4.31261 4.35912 4.41200 4.49109 4.50287 4.56221 4.60403 4.71390 4.76641 4.81381 4.84568 4.94002 4.95302 4.99089 5.04280 5.06913 5.21655 5.27453 5.30083 5.40271 5.54721 5.59441 5.65239 5.69569 5.73110 5.99712 6.06627 6.21904 6.32687 6.45044 6.50667 7.03221 7.29492 7.51214 9.02469 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016953 B = 0.005475 C = 0.004962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.228197 B = 5113.352408 C = 5641.893334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.103 3.897 3 N -0.608 5.608 4 C 0.111 3.889 5 C -0.136 4.136 6 C 0.059 3.941 7 N -0.555 5.555 8 C 0.083 3.917 9 C -0.059 4.059 10 C -0.120 4.120 11 C -0.114 4.114 12 C 0.064 3.936 13 C -0.515 4.515 14 H 0.056 0.944 15 C -0.004 4.004 16 N -0.935 5.935 17 Si 0.948 3.052 18 H -0.283 1.283 19 H -0.283 1.283 20 H -0.262 1.262 21 C 0.045 3.955 22 C 0.518 3.482 23 O -0.594 6.594 24 H 0.033 0.967 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.099 0.901 28 H 0.044 0.956 29 H 0.116 0.884 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.041 0.959 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.040 0.960 39 H 0.042 0.958 40 H 0.039 0.961 41 H 0.029 0.971 42 H 0.055 0.945 43 H -0.009 1.009 44 H -0.023 1.023 45 H 0.257 0.743 46 H 0.099 0.901 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.444 6.999 -12.306 20.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.019 4.019 3 N -0.340 5.340 4 C -0.010 4.010 5 C -0.175 4.175 6 C -0.069 4.069 7 N -0.281 5.281 8 C -0.043 4.043 9 C -0.059 4.059 10 C -0.178 4.178 11 C -0.171 4.171 12 C 0.027 3.973 13 C -0.553 4.553 14 H 0.074 0.926 15 C -0.200 4.200 16 N -0.577 5.577 17 Si 0.774 3.226 18 H -0.209 1.209 19 H -0.208 1.208 20 H -0.187 1.187 21 C -0.085 4.085 22 C 0.306 3.694 23 O -0.474 6.474 24 H 0.053 0.947 25 H 0.095 0.905 26 H 0.097 0.903 27 H 0.118 0.882 28 H 0.063 0.937 29 H 0.134 0.866 30 H 0.111 0.889 31 H 0.130 0.870 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.048 0.952 42 H 0.074 0.926 43 H 0.010 0.990 44 H -0.005 1.005 45 H 0.065 0.935 46 H 0.117 0.883 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -15.234 6.145 -11.715 20.176 hybrid contribution 0.695 -0.340 0.817 1.126 sum -14.539 5.805 -10.897 19.074 Atomic orbital electron populations 1.22020 0.94226 1.02970 1.01863 1.21520 0.95509 0.82274 1.02615 1.48115 1.64653 1.14322 1.06896 1.22134 0.95345 0.98862 0.84674 1.21881 0.96117 0.97639 1.01859 1.21753 1.01698 0.97947 0.85466 1.60377 1.10428 1.48373 1.08936 1.22131 0.96566 0.90282 0.95360 1.20583 0.95189 0.95790 0.94373 1.21648 0.99266 0.96831 1.00040 1.21712 0.97166 0.99815 0.98414 1.18738 0.91873 0.92807 0.93932 1.21763 1.22414 1.16229 0.94891 0.92594 1.25840 0.97973 0.97275 0.98916 1.70111 1.34915 1.25776 1.26924 0.85708 0.77626 0.78702 0.80602 1.20894 1.20815 1.18654 1.22558 0.89851 0.92298 1.03788 1.21029 0.75491 0.89780 0.83148 1.90658 1.54336 1.68904 1.33479 0.94749 0.90500 0.90301 0.88235 0.93701 0.86560 0.88913 0.87039 0.94059 0.92245 0.91783 0.91224 0.91833 0.91522 0.94108 0.93856 0.94185 0.95155 0.92599 0.99046 1.00481 0.93474 0.88318 0.89183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 10.24 71.98 0.74 -2.18 16 2 C 0.10 2.52 6.08 86.38 0.52 3.04 16 3 N -0.61 -15.94 2.48 -820.39 -2.03 -17.98 16 4 C 0.11 1.85 5.93 86.29 0.51 2.36 16 5 C -0.14 -2.84 5.86 30.21 0.18 -2.66 16 6 C 0.06 1.40 4.86 86.09 0.42 1.82 16 7 N -0.56 -17.61 3.29 -905.21 -2.98 -20.59 16 8 C 0.08 2.66 4.19 86.30 0.36 3.03 16 9 C -0.06 -2.40 0.60 -52.18 -0.03 -2.44 16 10 C -0.12 -4.44 8.10 71.98 0.58 -3.86 16 11 C -0.11 -4.76 6.52 71.98 0.47 -4.29 16 12 C 0.06 3.45 3.88 29.85 0.12 3.56 16 13 C -0.51 -30.40 7.80 25.60 0.20 -30.20 16 14 H 0.06 3.22 5.73 -2.91 -0.02 3.20 16 15 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 16 N -0.94 -59.95 13.29 21.45 0.28 -59.66 16 17 Si 0.95 47.37 29.54 68.60 2.03 49.39 16 18 H -0.28 -14.05 7.11 99.48 0.71 -13.35 16 19 H -0.28 -13.72 7.11 99.48 0.71 -13.02 16 20 H -0.26 -12.44 7.11 99.48 0.71 -11.73 16 21 C 0.05 1.30 4.04 85.78 0.35 1.65 16 22 C 0.52 17.78 7.02 88.06 0.62 18.39 16 23 O -0.59 -26.42 15.76 -3.03 -0.05 -26.47 16 24 H 0.03 0.82 8.14 -2.38 -0.02 0.80 16 25 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 27 H 0.10 1.86 8.03 -2.39 -0.02 1.84 16 28 H 0.04 1.45 7.40 -2.38 -0.02 1.43 16 29 H 0.12 1.20 7.92 -2.38 -0.02 1.18 16 30 H 0.09 1.17 6.76 -2.39 -0.02 1.15 16 31 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.04 1.23 8.05 -2.39 -0.02 1.21 16 33 H 0.06 1.02 7.78 -2.39 -0.02 1.00 16 34 H 0.06 1.70 7.61 -2.39 -0.02 1.69 16 35 H 0.07 2.16 7.38 -2.39 -0.02 2.15 16 36 H 0.06 1.63 7.73 -2.39 -0.02 1.61 16 37 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.04 1.66 6.80 -2.39 -0.02 1.64 16 39 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.04 1.89 5.79 -2.39 -0.01 1.88 16 41 H 0.03 1.35 6.89 -2.39 -0.02 1.34 16 42 H 0.06 1.91 7.09 -2.39 -0.02 1.89 16 43 H -0.01 -0.55 7.63 -2.39 -0.02 -0.57 16 44 H -0.02 -1.36 8.14 -2.39 -0.02 -1.38 16 45 H 0.26 15.58 8.31 -92.72 -0.77 14.81 16 46 H 0.10 3.07 4.96 -2.39 -0.01 3.06 16 47 H 0.09 1.83 6.66 -2.38 -0.02 1.81 16 Total: -1.00 -79.50 351.76 3.67 -75.83 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: 0.92 Total: 11.01 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: 5.49 Total: -11.53 kcal Atomic # 7 Polarization: -93.50 SS G_CDS: -4.73 Total: -98.23 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.05 Total: -26.47 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.39 kcal Total: -79.50 3.67 -75.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191540407.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.200 kcal (2) G-P(sol) polarization free energy of solvation -79.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds