Wall clock time and date at job start Tue Mar 31 2020 05:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47085 * 2 1 4 4 N 1.46896 * 109.47390 * 120.00135 * 2 1 3 5 5 C 1.46905 * 110.99732 * 274.99968 * 4 2 1 6 6 H 1.09003 * 110.05574 * 33.58457 * 5 4 2 7 7 C 1.54261 * 110.03431 * 272.16283 * 5 4 2 8 8 C 1.54888 * 104.19816 * 217.10772 * 7 5 4 9 9 C 1.54896 * 102.74783 * 37.94304 * 8 7 5 10 10 C 1.53878 * 110.02938 * 154.99808 * 5 4 2 11 11 C 1.52998 * 110.03277 * 359.97438 * 10 5 4 12 12 C 1.53000 * 110.07406 * 238.59345 * 10 5 4 13 13 C 1.50702 * 109.47144 * 240.00271 * 2 1 3 14 14 O 1.21282 * 119.99875 * 245.93398 * 13 2 1 15 15 N 1.34779 * 120.00091 * 65.93987 * 13 2 1 16 16 C 1.46500 * 119.99804 * 4.60656 * 15 13 2 17 17 C 1.46494 * 119.99912 * 184.61724 * 15 13 2 18 18 C 1.50704 * 109.47511 * 89.99509 * 17 15 13 19 19 H 1.07998 * 119.99899 * 0.02562 * 18 17 15 20 20 C 1.37871 * 119.99969 * 180.02562 * 18 17 15 21 21 N 1.31519 * 119.99725 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 120.00239 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.46834 * 90.00440 * 22 20 18 24 24 H 1.48502 * 109.47166 * 209.99992 * 22 20 18 25 25 H 1.48500 * 109.47121 * 330.00191 * 22 20 18 26 26 H 1.09003 * 109.46886 * 309.16957 * 1 2 3 27 27 H 1.09000 * 109.47448 * 69.16844 * 1 2 3 28 28 H 1.08994 * 109.46802 * 189.17069 * 1 2 3 29 29 H 1.00904 * 111.00375 * 151.05044 * 4 2 1 30 30 H 1.09001 * 110.48618 * 98.42940 * 7 5 4 31 31 H 1.09007 * 110.59769 * 335.84186 * 7 5 4 32 32 H 1.09001 * 110.75908 * 279.62923 * 8 7 5 33 33 H 1.08998 * 110.91345 * 156.33149 * 8 7 5 34 34 H 1.08999 * 110.48309 * 203.37543 * 9 8 7 35 35 H 1.09003 * 110.48091 * 80.73796 * 9 8 7 36 36 H 1.09007 * 109.47053 * 178.61859 * 11 10 5 37 37 H 1.09000 * 109.47242 * 58.61948 * 11 10 5 38 38 H 1.08995 * 109.47567 * 298.62029 * 11 10 5 39 39 H 1.08997 * 109.47227 * 180.71854 * 12 10 5 40 40 H 1.09009 * 109.46873 * 300.71604 * 12 10 5 41 41 H 1.09000 * 109.46938 * 60.71602 * 12 10 5 42 42 H 1.09001 * 109.46851 * 95.85634 * 16 15 13 43 43 H 1.09005 * 109.47079 * 215.84658 * 16 15 13 44 44 H 1.08994 * 109.47448 * 335.85131 * 16 15 13 45 45 H 1.08999 * 109.47192 * 209.99475 * 17 15 13 46 46 H 1.09004 * 109.46998 * 329.99364 * 17 15 13 47 47 H 0.97007 * 119.99666 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2227 2.3468 6 1 1.2759 0.9534 2.2868 7 6 3.4466 0.9424 2.3748 8 6 3.7914 1.0446 3.8813 9 6 3.2815 -0.3066 4.4411 10 6 1.9775 -0.5715 3.6607 11 6 1.8400 -2.0654 3.3605 12 6 0.7738 -0.0879 4.4719 13 6 2.0323 -0.7104 -1.2305 14 8 2.6383 -1.7554 -1.1225 15 7 1.8083 -0.1843 -2.4510 16 6 1.1662 1.1264 -2.5770 17 6 2.2067 -0.9233 -3.6515 18 6 1.0692 -1.8043 -4.0998 19 1 0.1421 -1.8126 -3.5461 20 6 1.2123 -2.5998 -5.2168 21 7 0.2197 -3.3690 -5.6077 22 14 2.8157 -2.5849 -6.1750 23 1 3.7295 -3.6194 -5.6270 24 1 2.5405 -2.8752 -7.6051 25 1 3.4519 -1.2485 -6.0547 26 1 -0.3633 0.6491 0.7968 27 1 -0.3634 0.3654 -0.9605 28 1 -0.3633 -1.0145 0.1638 29 1 2.9174 -1.1205 1.0287 30 1 3.3629 1.9359 1.9343 31 1 4.2006 0.3556 1.8498 32 1 3.2624 1.8783 4.3430 33 1 4.8670 1.1425 4.0285 34 1 3.0774 -0.2246 5.5087 35 1 4.0076 -1.0969 4.2503 36 1 1.7910 -2.6212 4.2970 37 1 2.7017 -2.4010 2.7835 38 1 0.9292 -2.2386 2.7873 39 1 0.7162 -0.6476 5.4054 40 1 0.8864 0.9740 4.6912 41 1 -0.1387 -0.2453 3.8969 42 1 1.9301 1.8962 -2.6863 43 1 0.5181 1.1308 -3.4535 44 1 0.5726 1.3275 -1.6853 45 1 2.4557 -0.2193 -4.4456 46 1 3.0770 -1.5398 -3.4265 47 1 0.3202 -3.9284 -6.3938 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191866382.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:17 Heat of formation + Delta-G solvation = -37.440806 kcal Electronic energy + Delta-G solvation = -23677.413458 eV Core-core repulsion = 20473.955788 eV Total energy + Delta-G solvation = -3203.457670 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.00017 -38.90265 -35.10531 -34.79746 -32.53941 -32.21609 -30.41276 -28.22026 -27.41266 -26.59097 -26.03114 -24.40088 -23.35042 -21.52076 -20.70247 -18.93129 -18.24468 -16.95115 -16.46039 -16.26781 -15.49107 -15.04716 -14.84699 -14.41591 -14.09948 -13.84561 -13.45999 -13.42433 -13.14616 -12.96436 -12.58255 -12.40028 -12.25799 -12.12980 -11.91625 -11.80633 -11.64669 -11.51791 -11.29567 -11.16197 -11.13014 -10.77108 -10.74394 -10.57100 -10.52023 -10.48615 -10.37159 -10.13850 -9.53242 -8.92851 -8.58395 -8.23300 -7.69827 -6.08160 -4.06964 3.29340 3.30222 3.35452 3.37275 3.75065 4.27441 4.40043 4.41425 4.53857 4.78949 4.96688 5.16477 5.22833 5.25203 5.25640 5.30777 5.32226 5.41330 5.45823 5.53471 5.58004 5.67655 5.74172 5.78761 5.83934 5.85305 5.89056 5.92359 5.96370 6.01189 6.09885 6.14406 6.17352 6.28542 6.40359 6.52525 6.65159 6.68236 6.93572 7.16682 7.34386 7.56078 7.61336 8.24452 8.47405 8.91989 8.97836 9.52114 11.05186 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028017 B = 0.003893 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.156314 B = 7191.538107 C = 7222.160132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.068 3.932 3 H 0.059 0.941 4 N -0.659 5.659 5 C 0.092 3.908 6 H 0.080 0.920 7 C -0.157 4.157 8 C -0.121 4.121 9 C -0.118 4.118 10 C -0.059 4.059 11 C -0.119 4.119 12 C -0.135 4.135 13 C 0.507 3.493 14 O -0.535 6.535 15 N -0.595 5.595 16 C 0.069 3.931 17 C 0.215 3.785 18 C -0.529 4.529 19 H 0.075 0.925 20 C 0.073 3.927 21 N -0.897 5.897 22 Si 0.876 3.124 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.267 1.267 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.354 0.646 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.037 0.963 37 H 0.055 0.945 38 H 0.066 0.934 39 H 0.052 0.948 40 H 0.049 0.951 41 H 0.057 0.943 42 H 0.044 0.956 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.029 0.971 46 H 0.037 0.963 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.569 12.172 18.380 22.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.045 4.045 3 H 0.077 0.923 4 N -0.293 5.293 5 C -0.019 4.019 6 H 0.098 0.902 7 C -0.196 4.196 8 C -0.158 4.158 9 C -0.155 4.155 10 C -0.060 4.060 11 C -0.176 4.176 12 C -0.193 4.193 13 C 0.293 3.707 14 O -0.411 6.411 15 N -0.327 5.327 16 C -0.075 4.075 17 C 0.095 3.905 18 C -0.567 4.567 19 H 0.093 0.907 20 C -0.130 4.130 21 N -0.535 5.535 22 Si 0.703 3.297 23 H -0.199 1.199 24 H -0.211 1.211 25 H -0.191 1.191 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.177 0.823 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.062 0.938 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.047 0.953 46 H 0.055 0.945 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.224 11.212 18.400 21.786 hybrid contribution 1.451 0.559 -0.961 1.828 sum 4.675 11.771 17.438 21.552 Atomic orbital electron populations 1.21923 0.92642 1.03549 1.01870 1.21440 0.97414 0.96069 0.89553 0.92333 1.60600 1.35190 1.31006 1.02551 1.22351 0.95940 0.92770 0.90828 0.90215 1.23167 0.98378 1.00932 0.97106 1.22390 1.00429 0.97708 0.95322 1.22526 0.96788 0.97111 0.99119 1.21149 0.94591 0.96728 0.93525 1.21587 1.03348 0.93068 0.99628 1.21872 0.97632 1.00313 0.99462 1.20353 0.80187 0.85655 0.84509 1.90649 1.41460 1.23073 1.85962 1.47761 1.59154 1.19097 1.06716 1.21974 0.97575 0.84461 1.03460 1.19658 0.97132 0.92039 0.81708 1.21328 1.00375 1.23458 1.11566 0.90701 1.24854 0.96401 0.94732 0.96995 1.69902 1.31584 1.26500 1.25561 0.86850 0.84346 0.79124 0.79349 1.19902 1.21067 1.19138 0.92516 0.90957 0.91021 0.82267 0.91937 0.91396 0.91697 0.91903 0.91829 0.91520 0.94379 0.92621 0.91450 0.92861 0.93143 0.92424 0.93767 0.90688 0.90763 0.95320 0.94533 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 8.83 37.16 0.33 -1.66 16 2 C 0.07 1.03 2.03 -68.87 -0.14 0.89 16 3 H 0.06 0.76 7.35 -51.93 -0.38 0.38 16 4 N -0.66 -9.31 4.11 -99.78 -0.41 -9.72 16 5 C 0.09 1.01 2.64 -66.59 -0.18 0.84 16 6 H 0.08 0.86 6.79 -51.93 -0.35 0.50 16 7 C -0.16 -1.59 6.36 -25.08 -0.16 -1.74 16 8 C -0.12 -1.04 6.91 -24.74 -0.17 -1.21 16 9 C -0.12 -1.07 5.90 -25.07 -0.15 -1.22 16 10 C -0.06 -0.60 0.94 -153.39 -0.14 -0.75 16 11 C -0.12 -1.40 7.36 37.16 0.27 -1.13 16 12 C -0.14 -1.22 8.14 37.16 0.30 -0.92 16 13 C 0.51 10.30 6.98 -10.98 -0.08 10.22 16 14 O -0.53 -13.04 15.28 5.56 0.08 -12.96 16 15 N -0.60 -12.26 2.86 -182.95 -0.52 -12.78 16 16 C 0.07 1.06 9.74 59.85 0.58 1.64 16 17 C 0.22 5.31 4.29 -5.19 -0.02 5.29 16 18 C -0.53 -15.28 9.94 -34.44 -0.34 -15.62 16 19 H 0.07 2.37 8.06 -52.49 -0.42 1.94 16 20 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 21 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 22 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 23 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 26 H 0.06 0.64 7.61 -51.93 -0.40 0.25 16 27 H 0.07 1.02 5.42 -51.93 -0.28 0.73 16 28 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.35 5.59 6.45 -39.29 -0.25 5.33 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.77 7.56 -51.92 -0.39 0.37 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.52 7.84 -51.93 -0.41 0.11 16 35 H 0.07 0.64 7.85 -51.93 -0.41 0.23 16 36 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.05 0.72 7.43 -51.93 -0.39 0.33 16 38 H 0.07 0.90 7.87 -51.93 -0.41 0.49 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 1.20 8.12 -51.93 -0.42 0.78 16 44 H 0.07 0.95 4.11 -51.93 -0.21 0.73 16 45 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 46 H 0.04 0.97 6.79 -51.93 -0.35 0.61 16 47 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 357.94 15.07 5.39 5.39 Total: -1.00 -32.64 357.94 -7.76 -40.40 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -8.42 Total: 2.98 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: 0.01 Total: -3.34 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: -0.16 Total: -49.53 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.08 Total: -12.96 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.64 -7.76 -40.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191866382.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.959 kcal (2) G-P(sol) polarization free energy of solvation -32.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds