Wall clock time and date at job start Tue Mar 31 2020 05:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47364 * 2 1 4 4 N 1.46899 * 109.47311 * 120.00707 * 2 1 3 5 5 C 1.46908 * 110.99471 * 274.99462 * 4 2 1 6 6 H 1.09002 * 110.01883 * 325.06363 * 5 4 2 7 7 C 1.54268 * 110.03032 * 86.45161 * 5 4 2 8 8 C 1.54895 * 104.19404 * 142.88964 * 7 5 4 9 9 C 1.54881 * 102.75154 * 322.06237 * 8 7 5 10 10 C 1.53871 * 110.03091 * 203.61817 * 5 4 2 11 11 C 1.53007 * 110.03253 * 0.02562 * 10 5 4 12 12 C 1.53000 * 110.03011 * 121.43362 * 10 5 4 13 13 C 1.50704 * 109.46704 * 240.00049 * 2 1 3 14 14 O 1.21279 * 120.00138 * 245.92486 * 13 2 1 15 15 N 1.34780 * 120.00133 * 65.92852 * 13 2 1 16 16 C 1.46501 * 119.99730 * 4.65398 * 15 13 2 17 17 C 1.46500 * 119.99960 * 184.64854 * 15 13 2 18 18 C 1.50701 * 109.46456 * 90.00261 * 17 15 13 19 19 H 1.07991 * 120.00484 * 359.97438 * 18 17 15 20 20 C 1.37884 * 119.99386 * 179.97438 * 18 17 15 21 21 N 1.31519 * 119.99913 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 120.00075 * 359.97438 * 20 18 17 23 23 H 1.48491 * 109.47157 * 90.00301 * 22 20 18 24 24 H 1.48502 * 109.47052 * 210.00201 * 22 20 18 25 25 H 1.48499 * 109.46932 * 329.99963 * 22 20 18 26 26 H 1.08998 * 109.47403 * 189.12492 * 1 2 3 27 27 H 1.09005 * 109.46908 * 309.12188 * 1 2 3 28 28 H 1.09000 * 109.47372 * 69.12023 * 1 2 3 29 29 H 1.00896 * 111.00278 * 38.94316 * 4 2 1 30 30 H 1.09000 * 110.48498 * 24.22019 * 7 5 4 31 31 H 1.08998 * 110.49153 * 261.57474 * 7 5 4 32 32 H 1.09005 * 110.75086 * 80.37353 * 8 7 5 33 33 H 1.08997 * 110.75559 * 203.73903 * 8 7 5 34 34 H 1.09002 * 110.49018 * 156.61704 * 9 8 7 35 35 H 1.09005 * 110.48384 * 279.26302 * 9 8 7 36 36 H 1.08995 * 109.46435 * 60.00363 * 11 10 5 37 37 H 1.09001 * 109.46738 * 180.02562 * 11 10 5 38 38 H 1.08997 * 109.46953 * 299.99916 * 11 10 5 39 39 H 1.09001 * 109.47195 * 60.00358 * 12 10 5 40 40 H 1.09006 * 109.46997 * 180.02562 * 12 10 5 41 41 H 1.09001 * 109.47012 * 299.99918 * 12 10 5 42 42 H 1.09001 * 109.47620 * 95.92776 * 16 15 13 43 43 H 1.09004 * 109.47080 * 215.92504 * 16 15 13 44 44 H 1.09000 * 109.46887 * 335.92610 * 16 15 13 45 45 H 1.08999 * 109.46844 * 209.99444 * 17 15 13 46 46 H 1.08995 * 109.47277 * 329.99983 * 17 15 13 47 47 H 0.96991 * 119.99840 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 2.0825 0.2225 2.3468 6 1 2.3634 1.2213 2.0126 7 6 0.7159 0.2691 3.0610 8 6 1.0762 0.3750 4.5638 9 6 2.3167 -0.5447 4.6836 10 6 3.1003 -0.2949 3.3784 11 6 3.7285 -1.6001 2.8857 12 6 4.1883 0.7548 3.6131 13 6 2.0322 -0.7104 -1.2305 14 8 2.6382 -1.7554 -1.1226 15 7 1.8079 -0.1845 -2.4511 16 6 1.1665 1.1266 -2.5771 17 6 2.2056 -0.9239 -3.6516 18 6 1.0675 -1.8044 -4.0992 19 1 0.1408 -1.8127 -3.5447 20 6 1.2093 -2.5994 -5.2168 21 7 0.2159 -3.3675 -5.6078 22 14 2.8119 -2.5844 -6.1764 23 1 3.7258 -3.6193 -5.6297 24 1 2.5353 -2.8739 -7.6064 25 1 3.4485 -1.2482 -6.0560 26 1 -0.3634 -1.0146 0.1630 27 1 -0.3633 0.6485 0.7973 28 1 -0.3634 0.3663 -0.9602 29 1 1.4495 -1.4980 1.4100 30 1 0.1529 -0.6439 2.8672 31 1 0.1484 1.1433 2.7422 32 1 1.3293 1.4015 4.8289 33 1 0.2596 0.0050 5.1838 34 1 2.9174 -0.2642 5.5488 35 1 2.0121 -1.5891 4.7517 36 1 4.2373 -1.4233 1.9381 37 1 4.4470 -1.9584 3.6230 38 1 2.9486 -2.3485 2.7455 39 1 3.7336 1.6721 3.9874 40 1 4.9040 0.3790 4.3444 41 1 4.7028 0.9610 2.6745 42 1 1.9307 1.8958 -2.6882 43 1 0.5170 1.1307 -3.4525 44 1 0.5746 1.3287 -1.6844 45 1 2.4546 -0.2202 -4.4459 46 1 3.0756 -1.5408 -3.4268 47 1 0.3158 -3.9270 -6.3937 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191866403.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:21 Heat of formation + Delta-G solvation = -34.795236 kcal Electronic energy + Delta-G solvation = -23689.654241 eV Core-core repulsion = 20486.311291 eV Total energy + Delta-G solvation = -3203.342950 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.98390 -38.81095 -35.14394 -34.78218 -32.50556 -32.20188 -30.27680 -28.15856 -27.41838 -26.67678 -25.94439 -24.18528 -23.52990 -21.52942 -20.92022 -18.97034 -18.18731 -16.91981 -16.40616 -16.08923 -15.46371 -15.08480 -14.58067 -14.22539 -14.08250 -13.86453 -13.68670 -13.40834 -13.10968 -12.93698 -12.86385 -12.34373 -12.28381 -12.08631 -11.96711 -11.89723 -11.54318 -11.42374 -11.29421 -11.13086 -11.06590 -10.81675 -10.73246 -10.60148 -10.50611 -10.47633 -10.38449 -10.09784 -9.50400 -8.87213 -8.56154 -8.11421 -7.59349 -6.06559 -4.04846 3.31868 3.37839 3.40243 3.47268 3.74724 4.34906 4.40299 4.42562 4.55146 4.79341 5.01583 5.15379 5.18419 5.23064 5.24694 5.27100 5.29165 5.39383 5.41729 5.52382 5.57209 5.66182 5.72296 5.75762 5.77174 5.85539 5.88957 5.89610 5.91596 6.02466 6.06994 6.13588 6.14917 6.28895 6.32219 6.41732 6.70439 6.74258 7.00052 7.16755 7.44461 7.51093 7.65119 8.36555 8.50852 8.95997 9.13322 9.54678 11.06870 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028110 B = 0.003961 C = 0.003811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.863194 B = 7067.575454 C = 7345.594464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.069 3.931 3 H 0.092 0.908 4 N -0.654 5.654 5 C 0.093 3.907 6 H 0.078 0.922 7 C -0.154 4.154 8 C -0.122 4.122 9 C -0.117 4.117 10 C -0.060 4.060 11 C -0.119 4.119 12 C -0.136 4.136 13 C 0.514 3.486 14 O -0.524 6.524 15 N -0.602 5.602 16 C 0.071 3.929 17 C 0.216 3.784 18 C -0.527 4.527 19 H 0.073 0.927 20 C 0.072 3.928 21 N -0.899 5.899 22 Si 0.877 3.123 23 H -0.273 1.273 24 H -0.286 1.286 25 H -0.266 1.266 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.349 0.651 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.037 0.963 38 H 0.053 0.947 39 H 0.050 0.950 40 H 0.052 0.948 41 H 0.056 0.944 42 H 0.043 0.957 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.028 0.972 46 H 0.037 0.963 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.271 11.868 18.921 22.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.044 4.044 3 H 0.110 0.890 4 N -0.284 5.284 5 C -0.017 4.017 6 H 0.097 0.903 7 C -0.194 4.194 8 C -0.160 4.160 9 C -0.155 4.155 10 C -0.061 4.061 11 C -0.177 4.177 12 C -0.193 4.193 13 C 0.299 3.701 14 O -0.399 6.399 15 N -0.335 5.335 16 C -0.073 4.073 17 C 0.096 3.904 18 C -0.566 4.566 19 H 0.091 0.909 20 C -0.130 4.130 21 N -0.538 5.538 22 Si 0.704 3.296 23 H -0.199 1.199 24 H -0.211 1.211 25 H -0.191 1.191 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.170 0.830 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.056 0.944 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.061 0.939 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.045 0.955 46 H 0.055 0.945 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.232 11.232 18.628 21.991 hybrid contribution -0.420 0.098 -0.497 0.658 sum 2.811 11.330 18.131 21.564 Atomic orbital electron populations 1.22725 0.95417 1.03046 1.03382 1.21522 0.93927 0.98115 0.90870 0.88961 1.60330 1.57660 1.08533 1.01887 1.22366 0.93327 0.95836 0.90184 0.90338 1.23249 0.98190 1.01840 0.96097 1.22417 0.97783 0.99741 0.96091 1.22523 0.96200 0.99679 0.97110 1.21172 0.94762 0.96574 0.93605 1.21590 0.99963 0.95239 1.00869 1.21873 0.97940 0.97942 1.01556 1.20217 0.80291 0.85711 0.83848 1.90644 1.40245 1.23032 1.85949 1.47782 1.59856 1.19094 1.06754 1.21918 0.97480 0.84777 1.03079 1.19616 0.97046 0.91986 0.81800 1.21346 1.00371 1.23437 1.11431 0.90859 1.24861 0.96417 0.94753 0.97017 1.69898 1.31585 1.26663 1.25630 0.86838 0.84329 0.79201 0.79258 1.19889 1.21139 1.19074 0.91769 0.91980 0.90311 0.83014 0.91338 0.91744 0.91707 0.91917 0.91870 0.91552 0.91088 0.94430 0.92824 0.93135 0.92855 0.92458 0.93851 0.90926 0.91104 0.95453 0.94509 0.92613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.41 8.29 37.15 0.31 -2.10 16 2 C 0.07 1.01 2.16 -68.87 -0.15 0.87 16 3 H 0.09 1.19 7.02 -51.93 -0.36 0.82 16 4 N -0.65 -9.00 3.75 -99.78 -0.37 -9.38 16 5 C 0.09 1.00 2.86 -66.59 -0.19 0.81 16 6 H 0.08 0.84 6.99 -51.93 -0.36 0.48 16 7 C -0.15 -1.42 5.02 -25.07 -0.13 -1.54 16 8 C -0.12 -1.00 6.91 -24.74 -0.17 -1.17 16 9 C -0.12 -1.04 5.90 -25.07 -0.15 -1.19 16 10 C -0.06 -0.62 0.94 -153.39 -0.14 -0.76 16 11 C -0.12 -1.45 7.37 37.16 0.27 -1.17 16 12 C -0.14 -1.27 8.15 37.16 0.30 -0.97 16 13 C 0.51 10.56 7.05 -10.98 -0.08 10.48 16 14 O -0.52 -13.10 16.00 5.56 0.09 -13.01 16 15 N -0.60 -12.51 2.86 -182.95 -0.52 -13.03 16 16 C 0.07 1.10 9.74 59.85 0.58 1.68 16 17 C 0.22 5.40 4.29 -5.19 -0.02 5.37 16 18 C -0.53 -15.28 9.94 -34.44 -0.34 -15.62 16 19 H 0.07 2.31 8.06 -52.49 -0.42 1.89 16 20 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 21 N -0.90 -27.92 13.96 55.43 0.77 -27.15 16 22 Si 0.88 21.91 27.47 -169.99 -4.67 17.24 16 23 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 26 H 0.06 0.91 7.95 -51.93 -0.41 0.50 16 27 H 0.06 0.63 6.32 -51.93 -0.33 0.30 16 28 H 0.08 1.06 5.42 -51.93 -0.28 0.78 16 29 H 0.35 4.96 7.25 -39.29 -0.28 4.68 16 30 H 0.07 0.67 7.58 -51.93 -0.39 0.28 16 31 H 0.06 0.55 7.37 -51.93 -0.38 0.17 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.51 7.84 -51.93 -0.41 0.10 16 35 H 0.07 0.61 7.84 -51.93 -0.41 0.20 16 36 H 0.07 1.04 7.81 -51.93 -0.41 0.63 16 37 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.05 0.68 7.44 -51.93 -0.39 0.30 16 39 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.07 1.17 8.12 -51.93 -0.42 0.75 16 44 H 0.07 0.89 4.11 -51.93 -0.21 0.68 16 45 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 46 H 0.04 0.99 6.79 -51.93 -0.35 0.64 16 47 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 355.21 15.07 5.35 5.35 Total: -1.00 -33.30 355.21 -7.67 -40.97 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -8.32 Total: 2.30 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: 0.00 Total: -3.30 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: -0.12 Total: -49.55 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.09 Total: -13.01 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.30 -7.67 -40.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191866403.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.174 kcal (2) G-P(sol) polarization free energy of solvation -33.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds