Wall clock time and date at job start Tue Mar 31 2020 05:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.53923 * 2 1 4 4 C 1.53105 * 109.50763 * 120.11057 * 2 1 3 5 5 O 1.43012 * 109.25920 * 176.78469 * 4 2 1 6 6 C 1.43021 * 113.73562 * 301.32778 * 5 4 2 7 7 C 1.53101 * 109.25844 * 58.67332 * 6 5 4 8 8 N 1.47013 * 109.50508 * 239.88902 * 2 1 3 9 9 C 1.46905 * 110.99655 * 57.67600 * 8 2 1 10 10 C 1.53005 * 109.46707 * 189.67819 * 9 8 2 11 11 N 1.46497 * 109.46676 * 179.97438 * 10 9 8 12 12 C 1.36931 * 120.00261 * 269.99656 * 11 10 9 13 13 H 1.07999 * 120.00261 * 141.98518 * 12 11 10 14 14 C 1.38810 * 119.99964 * 321.98825 * 12 11 10 15 15 N 1.31614 * 120.00282 * 338.71647 * 14 12 11 16 16 Si 1.86808 * 120.00110 * 158.71842 * 14 12 11 17 17 H 1.48503 * 109.46730 * 59.99834 * 16 14 12 18 18 H 1.48497 * 109.47188 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47030 * 300.00349 * 16 14 12 20 20 C 1.46506 * 120.00048 * 90.00304 * 11 10 9 21 21 C 1.54265 * 110.03516 * 117.69577 * 20 11 10 22 22 C 1.54963 * 104.16137 * 95.75455 * 21 20 11 23 23 C 1.54890 * 102.77570 * 37.88925 * 22 21 20 24 24 C 1.53866 * 110.03376 * 234.91424 * 20 11 10 25 25 H 1.09001 * 109.46789 * 180.10995 * 1 2 3 26 26 H 1.09000 * 109.46779 * 300.10811 * 1 2 3 27 27 H 1.08999 * 109.47333 * 60.10848 * 1 2 3 28 28 H 1.08999 * 109.50373 * 56.84842 * 4 2 1 29 29 H 1.09003 * 109.53529 * 296.73994 * 4 2 1 30 30 H 1.08998 * 109.50865 * 298.73705 * 6 5 4 31 31 H 1.08999 * 109.53811 * 178.62305 * 6 5 4 32 32 H 1.09000 * 109.50335 * 183.21591 * 7 6 5 33 33 H 1.08997 * 109.54514 * 63.10621 * 7 6 5 34 34 H 1.08992 * 109.47051 * 69.68169 * 9 8 2 35 35 H 1.08998 * 109.47257 * 309.67372 * 9 8 2 36 36 H 1.08999 * 109.47284 * 59.99511 * 10 9 8 37 37 H 1.08998 * 109.46898 * 299.99773 * 10 9 8 38 38 H 0.97003 * 120.00377 * 175.04232 * 15 14 12 39 39 H 1.09001 * 110.01164 * 356.30484 * 20 11 10 40 40 H 1.09002 * 110.48514 * 214.40579 * 21 20 11 41 41 H 1.08999 * 110.48543 * 337.04095 * 21 20 11 42 42 H 1.09000 * 110.71826 * 279.57373 * 22 21 20 43 43 H 1.08996 * 110.76517 * 156.22399 * 22 21 20 44 44 H 1.08997 * 110.48498 * 203.40434 * 23 22 21 45 45 H 1.09002 * 110.48588 * 80.76225 * 23 22 21 46 46 H 1.09001 * 110.03379 * 359.94851 * 24 20 11 47 47 H 1.08999 * 110.03853 * 121.32669 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0413 -0.7240 1.2484 5 8 3.4694 -0.7867 1.2057 6 6 3.9819 -1.4579 0.0514 7 6 3.4903 -0.7413 -1.2092 8 7 2.0209 -0.6952 -1.1988 9 6 1.5054 -0.0644 -2.4212 10 6 1.8334 -0.9466 -3.6275 11 7 1.3187 -0.3178 -4.8465 12 6 0.0492 -0.5967 -5.2773 13 1 -0.5584 0.1848 -5.7091 14 6 -0.4568 -1.8838 -5.1589 15 7 0.3644 -2.9054 -5.0400 16 14 -2.3034 -2.1660 -5.1685 17 1 -2.8728 -1.6729 -6.4483 18 1 -2.5830 -3.6178 -5.0297 19 1 -2.9223 -1.4316 -4.0359 20 6 2.1624 0.6093 -5.6049 21 6 2.4206 0.0520 -7.0200 22 6 1.3460 0.7391 -7.8999 23 6 1.2795 2.1681 -7.3061 24 6 1.4369 1.9539 -5.7865 25 1 -0.3633 -1.0277 0.0020 26 1 -0.3633 0.5155 0.8890 27 1 -0.3634 0.5121 -0.8909 28 1 1.6332 -1.7343 1.2759 29 1 1.7273 -0.1802 2.1394 30 1 3.6302 -2.4896 0.0441 31 1 5.0715 -1.4448 0.0759 32 1 3.8312 -1.2825 -2.0917 33 1 3.8862 0.2740 -1.2293 34 1 1.9698 0.9133 -2.5492 35 1 0.4248 0.0542 -2.3410 36 1 1.3690 -1.9244 -3.4996 37 1 2.9139 -1.0652 -3.7078 38 1 0.0117 -3.7958 -4.8852 39 1 3.1085 0.7626 -5.0856 40 1 3.4208 0.3214 -7.3594 41 1 2.2909 -1.0302 -7.0333 42 1 0.3852 0.2341 -7.8000 43 1 1.6615 0.7685 -8.9428 44 1 0.3174 2.6293 -7.5288 45 1 2.0952 2.7798 -7.6917 46 1 0.4567 1.9165 -5.3112 47 1 2.0303 2.7598 -5.3546 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192725237.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:00 Heat of formation + Delta-G solvation = -26.370774 kcal Electronic energy + Delta-G solvation = -24166.418332 eV Core-core repulsion = 20963.440694 eV Total energy + Delta-G solvation = -3202.977638 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.49997 -37.77961 -35.90627 -33.99588 -32.40885 -31.03894 -29.05049 -27.77845 -27.13615 -26.55203 -25.67411 -23.09602 -22.42366 -20.79160 -19.82650 -19.55956 -18.96304 -16.48339 -16.07464 -15.98284 -15.38037 -15.09629 -14.71907 -14.62688 -14.23745 -14.10867 -13.67762 -13.34146 -12.83425 -12.65976 -12.56441 -12.12375 -11.91755 -11.75128 -11.49204 -11.11164 -11.07778 -10.92136 -10.89147 -10.58977 -10.37686 -10.35223 -10.33014 -10.14962 -10.13601 -10.03615 -9.68539 -9.52033 -9.45844 -9.29378 -8.38286 -7.90023 -6.53133 -5.69512 -3.32713 3.38929 3.45864 3.47434 3.95604 4.16271 4.54152 4.96687 5.17359 5.22807 5.29806 5.36152 5.41784 5.46154 5.50942 5.58744 5.59427 5.71289 5.78408 5.81802 5.93123 5.99327 6.07558 6.12346 6.22353 6.23170 6.32396 6.35217 6.39977 6.45338 6.52603 6.61772 6.66688 6.67594 6.73728 6.88983 7.06426 7.18702 7.21179 7.22865 7.35565 7.48386 7.52999 7.85419 7.90783 8.58914 9.25915 9.88232 10.46526 11.26472 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015150 B = 0.005915 C = 0.004935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.711992 B = 4732.201357 C = 5672.117238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.046 3.954 3 H 0.040 0.960 4 C 0.070 3.930 5 O -0.392 6.392 6 C 0.064 3.936 7 C 0.019 3.981 8 N -0.527 5.527 9 C 0.038 3.962 10 C 0.154 3.846 11 N -0.575 5.575 12 C -0.249 4.249 13 H 0.060 0.940 14 C 0.016 3.984 15 N -0.881 5.881 16 Si 0.887 3.113 17 H -0.283 1.283 18 H -0.292 1.292 19 H -0.284 1.284 20 C 0.170 3.830 21 C -0.129 4.129 22 C -0.115 4.115 23 C -0.119 4.119 24 C -0.133 4.133 25 H 0.065 0.935 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.091 0.909 30 H 0.059 0.941 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.033 0.967 34 H 0.012 0.988 35 H 0.078 0.922 36 H 0.101 0.899 37 H 0.019 0.981 38 H 0.253 0.747 39 H 0.043 0.957 40 H 0.038 0.962 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.042 0.958 44 H 0.050 0.950 45 H 0.048 0.952 46 H 0.072 0.928 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.367 5.473 6.582 9.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.064 4.064 3 H 0.058 0.942 4 C -0.007 4.007 5 O -0.310 6.310 6 C -0.013 4.013 7 C -0.109 4.109 8 N -0.253 5.253 9 C -0.091 4.091 10 C 0.027 3.973 11 N -0.295 5.295 12 C -0.379 4.379 13 H 0.078 0.922 14 C -0.185 4.185 15 N -0.523 5.523 16 Si 0.716 3.284 17 H -0.209 1.209 18 H -0.218 1.218 19 H -0.211 1.211 20 C 0.063 3.937 21 C -0.168 4.168 22 C -0.152 4.152 23 C -0.157 4.157 24 C -0.172 4.172 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.109 0.891 30 H 0.077 0.923 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.052 0.948 34 H 0.030 0.970 35 H 0.096 0.904 36 H 0.119 0.881 37 H 0.037 0.963 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.061 0.939 44 H 0.069 0.931 45 H 0.067 0.933 46 H 0.091 0.909 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 4.287 4.860 6.680 9.307 hybrid contribution -0.868 0.630 -0.256 1.102 sum 3.419 5.490 6.424 9.116 Atomic orbital electron populations 1.21828 0.93701 1.02950 1.01833 1.22239 0.96351 0.95995 0.91772 0.94159 1.22700 0.80777 1.00309 0.96912 1.87916 1.20892 1.78688 1.43551 1.22682 0.98402 0.95865 0.84363 1.22770 0.89179 0.99665 0.99313 1.62277 1.07285 1.53491 1.02287 1.23043 1.00441 0.95956 0.89696 1.20856 0.95226 0.98310 0.82865 1.43843 1.12797 1.50648 1.22202 1.18838 0.89287 0.91760 1.38021 0.92245 1.25088 0.97200 0.95440 1.00733 1.70050 1.33419 0.98517 1.50314 0.86638 0.86890 0.76717 0.78130 1.20904 1.21757 1.21073 1.21033 0.91937 0.89375 0.91397 1.22761 0.95724 1.01681 0.96658 1.22413 1.00888 0.95194 0.96742 1.22265 0.99620 0.97263 0.96513 1.22609 1.01656 0.97774 0.95205 0.91581 0.92661 0.91483 0.92359 0.89139 0.92276 0.88959 0.89078 0.94832 0.96973 0.90353 0.88116 0.96262 0.93729 0.93860 0.94325 0.90524 0.90468 0.93900 0.93085 0.93288 0.90919 0.94066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 8.92 37.16 0.33 -1.74 16 2 C 0.05 0.69 2.59 -67.59 -0.17 0.51 16 3 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 4 C 0.07 0.95 6.29 37.21 0.23 1.18 16 5 O -0.39 -5.80 10.83 -35.23 -0.38 -6.18 16 6 C 0.06 0.87 7.01 37.21 0.26 1.13 16 7 C 0.02 0.30 5.43 -3.71 -0.02 0.28 16 8 N -0.53 -9.13 4.54 -226.33 -1.03 -10.16 16 9 C 0.04 0.74 5.06 -3.82 -0.02 0.72 16 10 C 0.15 3.45 5.19 -4.04 -0.02 3.43 16 11 N -0.58 -13.38 2.32 -164.40 -0.38 -13.76 16 12 C -0.25 -6.35 7.32 -15.06 -0.11 -6.46 16 13 H 0.06 1.54 6.70 -52.49 -0.35 1.19 16 14 C 0.02 0.42 4.95 -17.43 -0.09 0.33 16 15 N -0.88 -24.45 11.49 55.49 0.64 -23.81 16 16 Si 0.89 21.11 29.61 -169.99 -5.03 16.08 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 C 0.17 3.49 3.47 -66.81 -0.23 3.26 16 21 C -0.13 -2.58 6.17 -25.03 -0.15 -2.73 16 22 C -0.11 -2.13 6.57 -24.70 -0.16 -2.30 16 23 C -0.12 -2.00 6.83 -25.07 -0.17 -2.18 16 24 C -0.13 -2.47 6.15 -25.62 -0.16 -2.62 16 25 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.07 1.05 6.17 -51.93 -0.32 0.73 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.09 1.46 6.37 -51.93 -0.33 1.13 16 33 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.01 0.24 8.12 -51.93 -0.42 -0.18 16 35 H 0.08 1.65 5.77 -51.93 -0.30 1.35 16 36 H 0.10 2.62 5.54 -51.93 -0.29 2.33 16 37 H 0.02 0.42 6.33 -51.93 -0.33 0.09 16 38 H 0.25 6.90 8.32 -40.82 -0.34 6.56 16 39 H 0.04 0.86 7.86 -51.93 -0.41 0.45 16 40 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.08 1.80 8.04 -51.93 -0.42 1.38 16 42 H 0.08 1.62 7.16 -51.93 -0.37 1.25 16 43 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.07 1.48 6.70 -51.93 -0.35 1.13 16 47 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 350.99 15.07 5.29 5.29 Total: -1.00 -27.14 350.99 -9.90 -37.03 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -8.52 Total: 2.68 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -0.48 Total: -7.17 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: -0.77 Total: -47.73 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: -0.38 Total: -6.18 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -27.14 -9.90 -37.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192725237.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.662 kcal (2) G-P(sol) polarization free energy of solvation -27.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds