Wall clock time and date at job start Tue Mar 31 2020 05:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.50356 * 2 1 4 4 C 1.53095 * 109.51026 * 239.91546 * 2 1 3 5 5 N 1.47012 * 109.26363 * 183.17128 * 4 2 1 6 6 C 1.46896 * 111.00347 * 182.38950 * 5 4 2 7 7 C 1.52997 * 109.47242 * 190.00251 * 6 5 4 8 8 N 1.46498 * 109.47465 * 179.97438 * 7 6 5 9 9 C 1.36930 * 120.00297 * 270.00087 * 8 7 6 10 10 H 1.08006 * 120.00183 * 141.35784 * 9 8 7 11 11 C 1.38812 * 119.99828 * 321.36141 * 9 8 7 12 12 N 1.31617 * 120.00084 * 156.51068 * 11 9 8 13 13 Si 1.86798 * 120.00022 * 336.50154 * 11 9 8 14 14 H 1.48506 * 109.46867 * 95.31794 * 13 11 9 15 15 H 1.48495 * 109.47476 * 215.31605 * 13 11 9 16 16 H 1.48497 * 109.47318 * 335.32196 * 13 11 9 17 17 C 1.46503 * 119.99778 * 89.99624 * 8 7 6 18 18 C 1.54270 * 110.03328 * 241.71129 * 17 8 7 19 19 C 1.54889 * 104.19462 * 217.10901 * 18 17 8 20 20 C 1.54880 * 102.75346 * 37.94033 * 19 18 17 21 21 C 1.53879 * 110.03006 * 124.54315 * 17 8 7 22 22 C 1.47016 * 110.75041 * 58.61349 * 5 4 2 23 23 C 1.53106 * 109.25906 * 301.38700 * 22 5 4 24 24 O 1.43016 * 109.25709 * 56.84941 * 23 22 5 25 25 H 1.09006 * 109.46714 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47108 * 299.99713 * 1 2 3 27 27 H 1.09002 * 109.46546 * 60.00173 * 1 2 3 28 28 H 1.09001 * 109.50668 * 303.11036 * 4 2 1 29 29 H 1.09007 * 109.50703 * 63.19004 * 4 2 1 30 30 H 1.09006 * 109.47310 * 310.00341 * 6 5 4 31 31 H 1.09002 * 109.47109 * 70.00003 * 6 5 4 32 32 H 1.09006 * 109.47041 * 300.00254 * 7 6 5 33 33 H 1.09002 * 109.47271 * 59.99851 * 7 6 5 34 34 H 0.97000 * 120.00181 * 179.97438 * 12 11 9 35 35 H 1.09000 * 110.01743 * 3.15282 * 17 8 7 36 36 H 1.08998 * 110.48463 * 335.78122 * 18 17 8 37 37 H 1.09000 * 110.48419 * 98.42851 * 18 17 8 38 38 H 1.09008 * 110.75295 * 279.62730 * 19 18 17 39 39 H 1.09003 * 110.75600 * 156.25991 * 19 18 17 40 40 H 1.08998 * 110.48947 * 203.38188 * 20 19 18 41 41 H 1.08999 * 110.48637 * 80.73637 * 20 19 18 42 42 H 1.09000 * 110.03230 * 238.56406 * 21 17 8 43 43 H 1.08996 * 110.03204 * 359.95669 * 21 17 8 44 44 H 1.09004 * 109.50393 * 61.31838 * 22 5 4 45 45 H 1.08993 * 109.50870 * 181.40546 * 22 5 4 46 46 H 1.08995 * 109.50873 * 176.78087 * 23 22 5 47 47 H 1.08992 * 109.50357 * 296.91372 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2486 5 7 3.5094 -0.7870 -1.2053 6 6 4.0447 -1.4249 -2.4154 7 6 5.5384 -1.6991 -2.2292 8 7 6.0722 -2.3358 -3.4358 9 6 6.0695 -3.7005 -3.5481 10 1 5.8471 -4.1638 -4.4981 11 6 6.3526 -4.4886 -2.4410 12 7 5.9200 -5.7305 -2.3893 13 14 7.3478 -3.7865 -1.0246 14 1 6.4266 -3.2786 0.0236 15 1 8.2115 -4.8497 -0.4516 16 1 8.1961 -2.6728 -1.5199 17 6 6.6088 -1.5124 -4.5223 18 6 5.7889 -1.7367 -5.8097 19 6 6.8422 -1.6869 -6.9442 20 6 8.0604 -2.4042 -6.3116 21 6 8.0531 -1.9368 -4.8413 22 6 3.9650 -1.4868 0.0047 23 6 3.4344 -0.7557 1.2409 24 8 2.0084 -0.6761 1.1659 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 1.6339 -1.7340 -1.2763 29 1 1.7261 -0.1794 -2.1391 30 1 3.5220 -2.3650 -2.5921 31 1 3.9005 -0.7629 -3.2693 32 1 6.0611 -0.7590 -2.0525 33 1 5.6827 -2.3610 -1.3754 34 1 6.1181 -6.2813 -1.6158 35 1 6.5825 -0.4598 -4.2406 36 1 5.2999 -2.7105 -5.7858 37 1 5.0534 -0.9424 -5.9368 38 1 7.0895 -0.6557 -7.1968 39 1 6.4894 -2.2269 -7.8229 40 1 8.9826 -2.0970 -6.8048 41 1 7.9382 -3.4858 -6.3686 42 1 8.7275 -1.0899 -4.7154 43 1 8.3549 -2.7548 -4.1872 44 1 3.5882 -2.5096 -0.0029 45 1 5.0545 -1.5005 0.0288 46 1 3.7216 -1.3030 2.1386 47 1 3.8537 0.2497 1.2769 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192744218.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:31 Heat of formation + Delta-G solvation = -23.564539 kcal Electronic energy + Delta-G solvation = -23987.706805 eV Core-core repulsion = 20784.850855 eV Total energy + Delta-G solvation = -3202.855950 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.53593 -37.96161 -36.00402 -34.05538 -32.74042 -31.52588 -29.17250 -28.13123 -27.92755 -26.68915 -24.82882 -23.50462 -22.58930 -20.92188 -20.13114 -19.83102 -18.93823 -16.67531 -16.21024 -16.09467 -15.51295 -15.25493 -14.92842 -14.68545 -14.48405 -14.29058 -13.57494 -13.37997 -13.00985 -12.68157 -12.55444 -12.40511 -12.28477 -12.10683 -11.75619 -11.64120 -11.27011 -11.05709 -10.98667 -10.74012 -10.55821 -10.46489 -10.43446 -10.36542 -10.28865 -10.00046 -9.79833 -9.67102 -9.47850 -9.41202 -8.50348 -8.02443 -6.78526 -6.02797 -3.43392 3.24378 3.43697 3.49319 3.81239 4.09402 4.49563 4.88368 5.00079 5.10051 5.21051 5.23345 5.24019 5.34938 5.39474 5.41876 5.55475 5.57991 5.63696 5.66193 5.73482 5.84858 5.95864 6.01088 6.05476 6.11408 6.12655 6.18581 6.20840 6.23615 6.33003 6.36295 6.43216 6.51998 6.55351 6.66799 6.74122 6.77559 6.96979 7.09556 7.18063 7.23675 7.33890 7.38134 8.05853 8.40666 9.00666 9.70655 10.12899 11.12692 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017147 B = 0.005616 C = 0.004705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.573577 B = 4984.446931 C = 5949.416980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.089 3.911 3 H 0.063 0.937 4 C 0.024 3.976 5 N -0.538 5.538 6 C 0.040 3.960 7 C 0.137 3.863 8 N -0.598 5.598 9 C -0.258 4.258 10 H 0.080 0.920 11 C 0.038 3.962 12 N -0.898 5.898 13 Si 0.867 3.133 14 H -0.285 1.285 15 H -0.302 1.302 16 H -0.267 1.267 17 C 0.172 3.828 18 C -0.134 4.134 19 C -0.122 4.122 20 C -0.117 4.117 21 C -0.133 4.133 22 C 0.010 3.990 23 C 0.067 3.933 24 O -0.386 6.386 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.041 0.959 29 H 0.081 0.919 30 H 0.043 0.957 31 H 0.067 0.933 32 H 0.043 0.957 33 H 0.057 0.943 34 H 0.262 0.738 35 H 0.052 0.948 36 H 0.077 0.923 37 H 0.047 0.953 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.048 0.952 41 H 0.065 0.935 42 H 0.043 0.957 43 H 0.079 0.921 44 H 0.045 0.955 45 H 0.090 0.910 46 H 0.094 0.906 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.561 11.794 0.867 12.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.031 3.969 3 H 0.081 0.919 4 C -0.105 4.105 5 N -0.263 5.263 6 C -0.089 4.089 7 C 0.010 3.990 8 N -0.319 5.319 9 C -0.387 4.387 10 H 0.097 0.903 11 C -0.163 4.163 12 N -0.538 5.538 13 Si 0.697 3.303 14 H -0.213 1.213 15 H -0.230 1.230 16 H -0.192 1.192 17 C 0.065 3.935 18 C -0.174 4.174 19 C -0.160 4.160 20 C -0.155 4.155 21 C -0.172 4.172 22 C -0.118 4.118 23 C -0.010 4.010 24 O -0.305 6.305 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.060 0.940 29 H 0.099 0.901 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.084 0.916 42 H 0.062 0.938 43 H 0.098 0.902 44 H 0.063 0.937 45 H 0.108 0.892 46 H 0.112 0.888 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.486 12.019 1.108 12.877 hybrid contribution 0.481 -0.584 0.583 0.956 sum -4.004 11.435 1.692 12.234 Atomic orbital electron populations 1.21743 0.93173 1.02903 1.02288 1.22137 0.94468 0.95486 0.84781 0.91866 1.22779 0.88977 1.00091 0.98617 1.62383 1.07866 1.53033 1.03054 1.22843 0.98585 0.97100 0.90389 1.21311 0.90854 0.96055 0.90729 1.44258 1.68287 1.03120 1.16269 1.18613 1.42538 0.79442 0.98090 0.90302 1.25497 0.97972 0.94860 0.97954 1.69884 1.44801 1.08758 1.30393 0.87088 0.81734 0.78507 0.82943 1.21327 1.23016 1.19212 1.21073 0.91052 0.93010 0.88330 1.22822 0.97356 1.02006 0.95168 1.22422 0.96638 0.99252 0.97724 1.22243 0.96712 1.00456 0.96058 1.22536 0.97788 1.00659 0.96234 1.22899 1.01742 0.96589 0.90548 1.22659 0.80667 1.00073 0.97637 1.87941 1.21342 1.78522 1.42737 0.91886 0.91843 0.91056 0.94035 0.90100 0.93871 0.91457 0.93829 0.92490 0.92790 0.93010 0.90396 0.93431 0.92666 0.92718 0.93285 0.91629 0.93813 0.90222 0.93680 0.89187 0.88773 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.57 37.16 0.36 -1.16 16 2 C 0.09 1.19 3.42 -26.68 -0.09 1.10 16 3 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 4 C 0.02 0.36 4.91 -3.71 -0.02 0.34 16 5 N -0.54 -9.19 4.88 -234.30 -1.14 -10.33 16 6 C 0.04 0.77 5.60 -3.83 -0.02 0.75 16 7 C 0.14 2.88 3.78 -4.04 -0.02 2.87 16 8 N -0.60 -13.47 2.01 -164.39 -0.33 -13.80 16 9 C -0.26 -6.81 8.23 -15.06 -0.12 -6.94 16 10 H 0.08 2.28 7.03 -52.48 -0.37 1.91 16 11 C 0.04 1.05 5.27 -17.43 -0.09 0.96 16 12 N -0.90 -26.74 13.97 55.49 0.78 -25.96 16 13 Si 0.87 21.53 25.19 -169.99 -4.28 17.25 16 14 H -0.29 -6.77 6.19 56.52 0.35 -6.42 16 15 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 16 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 17 C 0.17 3.34 3.43 -66.81 -0.23 3.11 16 18 C -0.13 -2.39 6.42 -25.07 -0.16 -2.55 16 19 C -0.12 -1.88 6.91 -24.74 -0.17 -2.05 16 20 C -0.12 -1.95 6.83 -25.07 -0.17 -2.12 16 21 C -0.13 -2.50 6.25 -25.61 -0.16 -2.66 16 22 C 0.01 0.18 4.94 -3.71 -0.02 0.16 16 23 C 0.07 0.97 7.01 37.21 0.26 1.23 16 24 O -0.39 -5.91 10.47 -35.23 -0.37 -6.28 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.04 0.94 8.08 -51.93 -0.42 0.52 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.04 0.87 7.91 -51.93 -0.41 0.46 16 33 H 0.06 1.31 1.69 -51.93 -0.09 1.22 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.05 0.94 7.81 -51.93 -0.41 0.53 16 36 H 0.08 1.60 6.58 -51.93 -0.34 1.26 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.08 1.75 7.20 -51.93 -0.37 1.38 16 44 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.09 1.65 5.57 -51.93 -0.29 1.36 16 46 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 349.94 15.07 5.27 5.27 Total: -1.00 -28.78 349.94 -9.38 -38.16 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -8.65 Total: 2.65 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -0.66 Total: -6.96 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: -0.70 Total: -50.09 kcal Atomic # 8 Polarization: -5.91 SS G_CDS: -0.37 Total: -6.28 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.28 Total: 17.25 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.78 -9.38 -38.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192744218.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.598 kcal (2) G-P(sol) polarization free energy of solvation -28.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds