Wall clock time and date at job start Tue Mar 31 2020 05:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.50711 * 2 1 4 4 C 1.53102 * 109.50120 * 120.08191 * 2 1 3 5 5 N 1.47012 * 109.25841 * 176.82906 * 4 2 1 6 6 C 1.46899 * 111.00382 * 177.60478 * 5 4 2 7 7 C 1.53001 * 109.47228 * 169.99836 * 6 5 4 8 8 N 1.46496 * 109.47213 * 179.97438 * 7 6 5 9 9 C 1.36942 * 119.99838 * 94.85833 * 8 7 6 10 10 H 1.07994 * 120.00169 * 213.06714 * 9 8 7 11 11 C 1.38809 * 119.99642 * 33.06436 * 9 8 7 12 12 N 1.31620 * 120.00382 * 23.01916 * 11 9 8 13 13 Si 1.86803 * 119.99842 * 203.02009 * 11 9 8 14 14 H 1.48501 * 109.46885 * 270.00224 * 13 11 9 15 15 H 1.48503 * 109.47275 * 29.99855 * 13 11 9 16 16 H 1.48500 * 109.47540 * 150.00213 * 13 11 9 17 17 C 1.46496 * 120.00431 * 274.86413 * 8 7 6 18 18 C 1.54269 * 110.03310 * 237.90836 * 17 8 7 19 19 C 1.54960 * 104.16072 * 217.13548 * 18 17 8 20 20 C 1.54893 * 102.77800 * 37.88455 * 19 18 17 21 21 C 1.53873 * 110.03740 * 120.68789 * 17 8 7 22 22 C 1.47020 * 110.75211 * 301.38442 * 5 4 2 23 23 C 1.53096 * 109.25698 * 58.61000 * 22 5 4 24 24 O 1.43008 * 109.26463 * 303.15466 * 23 22 5 25 25 H 1.09000 * 109.47167 * 299.92003 * 1 2 3 26 26 H 1.09003 * 109.46605 * 59.92116 * 1 2 3 27 27 H 1.08998 * 109.47236 * 179.91251 * 1 2 3 28 28 H 1.08995 * 109.50845 * 56.89176 * 4 2 1 29 29 H 1.09000 * 109.50802 * 296.75965 * 4 2 1 30 30 H 1.08998 * 109.46726 * 49.99914 * 6 5 4 31 31 H 1.08996 * 109.46794 * 290.00115 * 6 5 4 32 32 H 1.09005 * 109.46897 * 60.00096 * 7 6 5 33 33 H 1.09004 * 109.47102 * 300.00377 * 7 6 5 34 34 H 0.96995 * 119.99810 * 179.97438 * 12 11 9 35 35 H 1.08998 * 110.01431 * 359.29347 * 17 8 7 36 36 H 1.09008 * 110.48191 * 335.77924 * 18 17 8 37 37 H 1.08996 * 110.48729 * 98.42046 * 18 17 8 38 38 H 1.09003 * 110.71707 * 279.57638 * 19 18 17 39 39 H 1.08998 * 110.92793 * 156.29591 * 19 18 17 40 40 H 1.09000 * 110.48655 * 203.40969 * 20 19 18 41 41 H 1.08996 * 110.48693 * 80.76823 * 20 19 18 42 42 H 1.09000 * 110.03197 * 238.57074 * 21 17 8 43 43 H 1.09005 * 110.02906 * 359.97438 * 21 17 8 44 44 H 1.08994 * 109.50562 * 178.54856 * 22 5 4 45 45 H 1.09000 * 109.50010 * 298.67798 * 22 5 4 46 46 H 1.08997 * 109.50846 * 183.21619 * 23 22 5 47 47 H 1.09011 * 109.54119 * 63.11317 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0411 -0.7234 1.2488 5 7 3.5092 -0.7870 1.2056 6 6 4.0445 -1.4248 2.4158 7 6 5.5382 -1.6990 2.2297 8 7 6.0721 -2.3345 3.4369 9 6 6.1615 -3.6991 3.5099 10 1 6.0269 -4.1991 4.4576 11 6 6.4251 -4.4395 2.3657 12 7 7.0233 -3.8737 1.3389 13 14 5.9307 -6.2390 2.2833 14 1 7.0453 -7.0820 2.7854 15 1 4.7258 -6.4603 3.1226 16 1 5.6280 -6.6053 0.8764 17 6 6.5103 -1.5103 4.5660 18 6 7.9908 -1.8001 4.8886 19 6 8.0635 -1.7257 6.4347 20 6 6.7248 -2.3706 6.8720 21 6 5.7056 -1.8724 5.8266 22 6 3.9649 -1.4870 -0.0044 23 6 3.4344 -0.7560 -1.2406 24 8 2.0085 -0.6763 -1.1658 25 1 -0.3633 0.5126 0.8907 26 1 -0.3633 0.5151 -0.8893 27 1 -0.3633 -1.0276 -0.0016 28 1 1.6336 -1.7339 1.2765 29 1 1.7266 -0.1789 2.1392 30 1 3.5218 -2.3648 2.5925 31 1 3.9001 -0.7627 3.2695 32 1 6.0609 -0.7589 2.0530 33 1 5.6825 -2.3611 1.3759 34 1 7.2078 -4.3912 0.5396 35 1 6.3794 -0.4543 4.3300 36 1 8.2692 -2.7951 4.5412 37 1 8.6342 -1.0440 4.4388 38 1 8.1204 -0.6897 6.7687 39 1 8.9100 -2.2989 6.8127 40 1 6.4454 -2.0306 7.8692 41 1 6.7983 -3.4577 6.8453 42 1 5.1848 -0.9919 6.2028 43 1 4.9887 -2.6611 5.5982 44 1 5.0545 -1.4999 -0.0288 45 1 3.5881 -2.5098 0.0033 46 1 3.7217 -1.3034 -2.1383 47 1 3.8537 0.2495 -1.2775 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192744235.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:33 Heat of formation + Delta-G solvation = -29.004649 kcal Electronic energy + Delta-G solvation = -23896.373921 eV Core-core repulsion = 20693.282070 eV Total energy + Delta-G solvation = -3203.091851 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.39810 -37.77764 -35.81836 -33.95950 -32.64809 -31.11957 -28.97711 -27.93291 -27.84743 -26.42042 -24.81051 -23.41113 -22.47950 -20.53772 -19.92087 -19.71561 -19.06941 -16.53533 -16.07440 -15.80188 -15.48866 -14.85453 -14.80483 -14.56469 -14.32746 -14.13970 -13.69841 -13.08066 -12.85415 -12.57169 -12.50488 -12.34394 -12.09814 -11.91915 -11.59182 -11.28822 -10.98256 -10.95936 -10.90141 -10.71237 -10.46409 -10.33657 -10.32748 -10.24887 -10.21274 -9.97159 -9.83821 -9.55352 -9.47257 -9.30497 -8.44979 -7.86935 -6.59061 -5.80276 -3.31127 3.33106 3.41778 3.44646 3.90900 4.24276 4.49161 4.97359 5.18514 5.25896 5.28108 5.36883 5.38681 5.45403 5.47973 5.54591 5.60979 5.69556 5.74142 5.77681 5.83176 6.01144 6.10260 6.13349 6.18064 6.24221 6.29329 6.32455 6.35847 6.39024 6.45385 6.55528 6.60831 6.63642 6.71629 6.85125 6.96211 7.04267 7.21040 7.34613 7.35758 7.49563 7.53253 7.73497 7.84449 8.50660 9.19581 9.84601 10.39913 11.20306 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015175 B = 0.005499 C = 0.004553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.738749 B = 5090.325091 C = 6147.725722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.090 3.910 3 H 0.063 0.937 4 C 0.024 3.976 5 N -0.536 5.536 6 C 0.039 3.961 7 C 0.140 3.860 8 N -0.577 5.577 9 C -0.245 4.245 10 H 0.063 0.937 11 C 0.007 3.993 12 N -0.888 5.888 13 Si 0.889 3.111 14 H -0.286 1.286 15 H -0.280 1.280 16 H -0.290 1.290 17 C 0.169 3.831 18 C -0.130 4.130 19 C -0.124 4.124 20 C -0.117 4.117 21 C -0.135 4.135 22 C 0.016 3.984 23 C 0.065 3.935 24 O -0.389 6.389 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.037 0.963 29 H 0.077 0.923 30 H 0.030 0.970 31 H 0.056 0.944 32 H 0.026 0.974 33 H 0.109 0.891 34 H 0.253 0.747 35 H 0.048 0.952 36 H 0.084 0.916 37 H 0.045 0.955 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.047 0.953 41 H 0.061 0.939 42 H 0.043 0.957 43 H 0.070 0.930 44 H 0.102 0.898 45 H 0.039 0.961 46 H 0.094 0.906 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.751 7.445 0.784 10.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.032 3.968 3 H 0.081 0.919 4 C -0.105 4.105 5 N -0.261 5.261 6 C -0.091 4.091 7 C 0.013 3.987 8 N -0.296 5.296 9 C -0.374 4.374 10 H 0.080 0.920 11 C -0.192 4.192 12 N -0.531 5.531 13 Si 0.719 3.281 14 H -0.213 1.213 15 H -0.206 1.206 16 H -0.216 1.216 17 C 0.062 3.938 18 C -0.169 4.169 19 C -0.162 4.162 20 C -0.155 4.155 21 C -0.174 4.174 22 C -0.112 4.112 23 C -0.011 4.011 24 O -0.308 6.308 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.055 0.945 29 H 0.096 0.904 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.045 0.955 33 H 0.126 0.874 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.102 0.898 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.062 0.938 43 H 0.089 0.911 44 H 0.120 0.880 45 H 0.058 0.942 46 H 0.112 0.888 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.632 7.772 0.459 10.227 hybrid contribution -0.369 -1.750 0.257 1.807 sum -7.001 6.021 0.716 9.262 Atomic orbital electron populations 1.21741 0.93378 1.02754 1.02211 1.22115 0.94286 0.95532 0.84905 0.91917 1.22769 0.89565 0.99706 0.98438 1.62338 1.07211 1.53267 1.03316 1.22938 1.00292 0.95892 0.89946 1.21152 0.87540 0.96768 0.93197 1.43953 1.69905 1.02326 1.13441 1.18930 1.42135 0.81592 0.94776 0.91966 1.25016 0.98506 0.97400 0.98299 1.69990 1.40826 1.36061 1.06238 0.86512 0.78771 0.85910 0.76941 1.21308 1.20573 1.21570 1.21046 0.91388 0.93288 0.88092 1.22792 0.98242 1.02813 0.93066 1.22448 0.96935 0.99190 0.97610 1.22248 0.95678 1.00234 0.97350 1.22621 0.98444 1.00005 0.96346 1.22835 1.02607 0.95871 0.89926 1.22699 0.80352 1.00163 0.97932 1.87922 1.21685 1.78503 1.42693 0.91148 0.91897 0.92016 0.94464 0.90412 0.95170 0.92553 0.95539 0.87400 0.93679 0.93320 0.89776 0.93605 0.92860 0.92877 0.93426 0.92049 0.93823 0.91140 0.87981 0.94249 0.88820 0.92656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.57 37.16 0.36 -1.21 16 2 C 0.09 1.24 3.43 -26.68 -0.09 1.15 16 3 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 4 C 0.02 0.37 4.91 -3.71 -0.02 0.35 16 5 N -0.54 -9.55 4.88 -234.31 -1.14 -10.69 16 6 C 0.04 0.78 5.60 -3.82 -0.02 0.75 16 7 C 0.14 3.18 4.47 -4.04 -0.02 3.16 16 8 N -0.58 -13.58 2.40 -164.39 -0.39 -13.98 16 9 C -0.24 -6.31 7.65 -15.06 -0.12 -6.43 16 10 H 0.06 1.63 7.27 -52.49 -0.38 1.25 16 11 C 0.01 0.19 4.91 -17.43 -0.09 0.10 16 12 N -0.89 -24.35 11.32 55.49 0.63 -23.72 16 13 Si 0.89 21.21 29.61 -169.99 -5.03 16.18 16 14 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 17 C 0.17 3.47 3.42 -66.81 -0.23 3.24 16 18 C -0.13 -2.57 6.42 -25.03 -0.16 -2.73 16 19 C -0.12 -2.02 6.91 -24.70 -0.17 -2.20 16 20 C -0.12 -1.95 6.83 -25.07 -0.17 -2.12 16 21 C -0.13 -2.47 6.15 -25.62 -0.16 -2.63 16 22 C 0.02 0.28 4.94 -3.71 -0.02 0.26 16 23 C 0.07 0.99 7.01 37.21 0.26 1.25 16 24 O -0.39 -6.12 10.47 -35.23 -0.37 -6.49 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.03 0.66 8.08 -51.93 -0.42 0.24 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.03 0.60 8.03 -51.93 -0.42 0.19 16 33 H 0.11 2.70 3.44 -51.93 -0.18 2.52 16 34 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 35 H 0.05 0.97 7.89 -51.93 -0.41 0.56 16 36 H 0.08 1.94 7.03 -51.92 -0.37 1.58 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 1.43 7.06 -51.93 -0.37 1.07 16 44 H 0.10 1.96 6.05 -51.93 -0.31 1.65 16 45 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 47 H 0.06 0.79 8.14 -51.92 -0.42 0.36 16 LS Contribution 355.63 15.07 5.36 5.36 Total: -1.00 -27.23 355.63 -10.34 -37.57 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -8.75 Total: 2.82 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -0.64 Total: -7.04 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: -0.91 Total: -48.40 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -0.37 Total: -6.49 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -27.23 -10.34 -37.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192744235.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.569 kcal (2) G-P(sol) polarization free energy of solvation -27.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds