Wall clock time and date at job start Tue Mar 31 2020 05:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46794 * 2 1 4 4 C 1.50693 * 109.47417 * 120.00148 * 2 1 3 5 5 H 1.08009 * 120.00046 * 114.31699 * 4 2 1 6 6 C 1.37878 * 120.00277 * 294.31785 * 4 2 1 7 7 N 1.31517 * 120.00046 * 155.04484 * 6 4 2 8 8 Si 1.86803 * 119.99888 * 335.32679 * 6 4 2 9 9 H 1.48494 * 109.46874 * 179.72321 * 8 6 4 10 10 H 1.48497 * 109.46669 * 299.72117 * 8 6 4 11 11 H 1.48501 * 109.46925 * 59.72371 * 8 6 4 12 12 N 1.46897 * 109.46761 * 240.00401 * 2 1 3 13 13 C 1.46904 * 111.00054 * 183.95091 * 12 2 1 14 14 C 1.46901 * 111.00395 * 59.99587 * 12 2 1 15 15 C 1.50696 * 109.47338 * 189.99861 * 14 12 2 16 16 O 1.21282 * 120.00301 * 0.02562 * 15 14 12 17 17 N 1.34779 * 119.99954 * 180.02562 * 15 14 12 18 18 C 1.46498 * 119.99982 * 359.97438 * 17 15 14 19 19 C 1.46502 * 119.99819 * 180.02562 * 17 15 14 20 20 C 1.53009 * 109.46643 * 239.99689 * 19 17 15 21 21 C 1.53001 * 109.46691 * 180.02562 * 20 19 17 22 22 C 1.52998 * 109.47652 * 59.99874 * 21 20 19 23 23 C 1.53002 * 109.46954 * 299.99958 * 22 21 20 24 24 C 1.53004 * 109.47140 * 60.00211 * 23 22 21 25 25 H 1.09001 * 109.47132 * 171.91475 * 1 2 3 26 26 H 1.09002 * 109.46962 * 291.91327 * 1 2 3 27 27 H 1.08998 * 109.47417 * 51.91130 * 1 2 3 28 28 H 0.97000 * 120.00009 * 355.22761 * 7 6 4 29 29 H 1.09002 * 109.46603 * 59.99758 * 13 12 2 30 30 H 1.08996 * 109.47049 * 179.97438 * 13 12 2 31 31 H 1.08994 * 109.47094 * 299.99946 * 13 12 2 32 32 H 1.08996 * 109.47188 * 310.00376 * 14 12 2 33 33 H 1.09007 * 109.46801 * 70.00069 * 14 12 2 34 34 H 1.09005 * 109.47119 * 89.99774 * 18 17 15 35 35 H 1.09000 * 109.47355 * 210.00440 * 18 17 15 36 36 H 1.08996 * 109.47474 * 330.00403 * 18 17 15 37 37 H 1.08991 * 109.47397 * 359.97438 * 19 17 15 38 38 H 1.09000 * 109.47135 * 299.99684 * 20 19 17 39 39 H 1.08997 * 109.46854 * 60.00284 * 20 19 17 40 40 H 1.09000 * 109.46753 * 299.99526 * 21 20 19 41 41 H 1.09003 * 109.46738 * 180.02562 * 21 20 19 42 42 H 1.09000 * 109.47124 * 180.02562 * 22 21 20 43 43 H 1.09007 * 109.46775 * 59.99684 * 22 21 20 44 44 H 1.09000 * 109.47140 * 300.00158 * 23 22 21 45 45 H 1.08997 * 109.46633 * 179.97438 * 23 22 21 46 46 H 1.08996 * 109.46905 * 180.02562 * 24 23 22 47 47 H 1.08994 * 109.47569 * 59.99389 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.5756 -1.6390 1.1339 6 6 1.7987 -0.1751 2.4793 7 7 1.7729 -0.9578 3.5359 8 14 1.5107 1.6608 2.6696 9 1 1.2783 1.9795 4.1012 10 1 2.7029 2.4016 2.1847 11 1 0.3221 2.0604 1.8742 12 7 2.0196 -0.6924 -1.1995 13 6 3.4850 -0.7944 -1.1872 14 6 1.5485 -0.0263 -2.4211 15 6 1.8577 -0.8910 -3.6159 16 8 2.4152 -1.9574 -3.4648 17 7 1.5148 -0.4792 -4.8526 18 6 0.8408 0.8087 -5.0352 19 6 1.8149 -1.3201 -6.0141 20 6 2.7312 -0.5570 -6.9729 21 6 3.0442 -1.4350 -8.1863 22 6 1.7422 -1.7961 -8.9041 23 6 0.8260 -2.5591 -7.9453 24 6 0.5128 -1.6811 -6.7320 25 1 -0.3633 -1.0175 -0.1445 26 1 -0.3633 0.3835 0.9534 27 1 -0.3634 0.6339 -0.8088 28 1 1.8492 -1.9189 3.4295 29 1 3.8029 -1.3531 -0.3069 30 1 3.8207 -1.3115 -2.0861 31 1 3.9186 0.2052 -1.1593 32 1 0.4721 0.1325 -2.3563 33 1 2.0517 0.9347 -2.5281 34 1 1.5857 1.5914 -5.1791 35 1 0.1925 0.7587 -5.9100 36 1 0.2429 1.0343 -4.1523 37 1 2.3132 -2.2314 -5.6839 38 1 2.2332 0.3545 -7.3033 39 1 3.6586 -0.2995 -6.4614 40 1 3.5421 -2.3467 -7.8562 41 1 3.6974 -0.8916 -8.8691 42 1 1.9652 -2.4219 -9.7682 43 1 1.2443 -0.8842 -9.2341 44 1 1.3239 -3.4708 -7.6152 45 1 -0.1017 -2.8159 -8.4566 46 1 -0.1395 -2.2249 -6.0487 47 1 0.0150 -0.7694 -7.0619 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193535609.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:01 Heat of formation + Delta-G solvation = -38.589151 kcal Electronic energy + Delta-G solvation = -23471.504669 eV Core-core repulsion = 20267.997203 eV Total energy + Delta-G solvation = -3203.507466 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.21420 -38.31375 -36.50713 -34.98050 -32.69640 -31.01626 -30.50022 -29.78710 -27.73861 -26.78841 -24.39565 -23.80014 -22.85469 -22.21442 -19.93622 -19.46954 -18.76653 -17.46512 -16.80730 -16.39004 -15.64904 -15.11527 -14.69116 -14.38305 -14.32919 -14.07803 -13.66386 -13.54344 -13.17071 -13.01975 -12.68317 -12.55611 -12.51531 -12.41010 -12.13135 -11.79447 -11.49991 -11.37853 -11.36027 -11.17092 -10.90271 -10.86743 -10.53853 -10.52726 -10.41963 -10.33979 -10.11211 -9.83210 -9.24498 -8.88238 -8.56539 -8.16624 -7.28914 -6.44654 -3.98645 2.92701 3.00556 3.39084 3.43574 3.61377 4.40975 4.52266 4.52531 4.63652 4.74907 4.90834 4.97288 4.99742 5.07902 5.19516 5.23062 5.24545 5.25897 5.37199 5.39259 5.49512 5.56956 5.69083 5.74100 5.77227 5.79495 5.86124 5.88952 5.96812 6.11391 6.18786 6.21814 6.32914 6.45352 6.57995 6.62603 6.71399 6.91369 7.01613 7.33570 7.45556 7.78703 8.06030 8.34908 8.46992 8.53080 9.04570 9.65213 10.94069 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.037563 B = 0.003540 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.241450 B = 7908.290889 C = 8046.336647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.192 3.808 3 H -0.011 1.011 4 C -0.597 4.597 5 H 0.067 0.933 6 C 0.037 3.963 7 N -0.897 5.897 8 Si 1.034 2.966 9 H -0.285 1.285 10 H -0.286 1.286 11 H -0.279 1.279 12 N -0.512 5.512 13 C 0.037 3.963 14 C 0.032 3.968 15 C 0.517 3.483 16 O -0.517 6.517 17 N -0.622 5.622 18 C 0.078 3.922 19 C 0.140 3.860 20 C -0.126 4.126 21 C -0.117 4.117 22 C -0.120 4.120 23 C -0.117 4.117 24 C -0.127 4.127 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.018 0.982 28 H 0.271 0.729 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.005 0.995 32 H 0.100 0.900 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.100 0.900 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.066 0.934 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.235 3.924 -24.793 25.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.084 3.916 3 H 0.006 0.994 4 C -0.635 4.635 5 H 0.085 0.915 6 C -0.169 4.169 7 N -0.530 5.530 8 Si 0.863 3.137 9 H -0.210 1.210 10 H -0.212 1.212 11 H -0.205 1.205 12 N -0.236 5.236 13 C -0.111 4.111 14 C -0.099 4.099 15 C 0.305 3.695 16 O -0.391 6.391 17 N -0.358 5.358 18 C -0.066 4.066 19 C 0.037 3.963 20 C -0.164 4.164 21 C -0.155 4.155 22 C -0.157 4.157 23 C -0.155 4.155 24 C -0.166 4.166 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.037 0.963 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.024 0.976 32 H 0.118 0.882 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.118 0.882 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.085 0.915 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.367 4.048 -23.509 23.972 hybrid contribution 0.462 -0.168 -1.191 1.289 sum -1.905 3.881 -24.700 25.076 Atomic orbital electron populations 1.22192 0.98307 1.00263 0.99112 1.19606 0.91738 0.91855 0.88353 0.99360 1.21892 1.40658 1.10762 0.90168 0.91528 1.25617 0.93541 1.05615 0.92126 1.70832 1.43716 1.06266 1.32203 0.84169 0.77012 0.76467 0.76093 1.21025 1.21227 1.20524 1.61782 1.10771 1.51203 0.99876 1.22314 0.87263 0.98693 1.02827 1.22083 1.02395 0.94783 0.90671 1.20981 0.77815 0.87058 0.83648 1.90638 1.40701 1.22948 1.84840 1.47997 1.60819 1.20642 1.06329 1.21741 0.97143 0.84881 1.02810 1.21019 0.95350 0.94986 0.84930 1.21868 0.99806 0.98773 0.95976 1.21501 0.97382 1.00015 0.96620 1.21559 0.96003 1.00213 0.97960 1.21500 0.99616 0.98666 0.95720 1.21884 0.97452 1.00072 0.97176 0.92805 0.92679 0.96322 0.91939 0.90405 0.91911 0.97638 0.88207 0.93270 0.92859 0.91191 0.90859 0.88210 0.91819 0.91703 0.91697 0.91818 0.91992 0.92044 0.91666 0.91778 0.91508 0.91751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.47 37.16 0.31 -2.82 16 2 C 0.19 4.68 1.66 -68.87 -0.11 4.56 16 3 H -0.01 -0.27 6.70 -51.93 -0.35 -0.61 16 4 C -0.60 -17.03 7.98 -34.44 -0.27 -17.31 16 5 H 0.07 2.09 6.88 -52.48 -0.36 1.72 16 6 C 0.04 1.08 5.15 -17.82 -0.09 0.99 16 7 N -0.90 -27.60 13.70 55.43 0.76 -26.84 16 8 Si 1.03 25.06 26.49 -169.99 -4.50 20.55 16 9 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.24 6.29 56.52 0.36 -5.88 16 12 N -0.51 -11.54 4.36 -237.74 -1.04 -12.58 16 13 C 0.04 0.82 8.88 60.07 0.53 1.35 16 14 C 0.03 0.57 3.81 -4.98 -0.02 0.55 16 15 C 0.52 8.86 7.37 -10.99 -0.08 8.78 16 16 O -0.52 -10.81 13.66 5.56 0.08 -10.74 16 17 N -0.62 -7.97 2.76 -173.93 -0.48 -8.45 16 18 C 0.08 0.72 9.30 59.85 0.56 1.28 16 19 C 0.14 1.60 2.52 -67.92 -0.17 1.43 16 20 C -0.13 -1.17 5.21 -26.73 -0.14 -1.31 16 21 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 22 C -0.12 -0.84 5.92 -26.73 -0.16 -1.00 16 23 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 24 C -0.13 -1.20 5.18 -26.73 -0.14 -1.34 16 25 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 26 H 0.05 1.27 5.67 -51.93 -0.29 0.98 16 27 H 0.02 0.34 6.64 -51.93 -0.34 -0.01 16 28 H 0.27 8.35 8.73 -40.82 -0.36 8.00 16 29 H 0.08 1.88 6.34 -51.93 -0.33 1.55 16 30 H 0.06 1.34 5.82 -51.93 -0.30 1.04 16 31 H 0.01 0.11 8.14 -51.93 -0.42 -0.31 16 32 H 0.10 1.64 5.26 -51.93 -0.27 1.36 16 33 H 0.05 0.80 8.09 -51.93 -0.42 0.38 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.51 6.42 -51.93 -0.33 0.18 16 36 H 0.07 0.67 6.44 -51.93 -0.33 0.33 16 37 H 0.10 1.41 6.90 -51.93 -0.36 1.05 16 38 H 0.06 0.53 7.67 -51.93 -0.40 0.13 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.06 0.53 6.66 -51.93 -0.35 0.18 16 LS Contribution 348.57 15.07 5.25 5.25 Total: -1.00 -32.55 348.57 -8.32 -40.87 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -8.29 Total: -1.06 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -0.10 Total: -7.01 kcal Atomic # 7 Polarization: -47.11 SS G_CDS: -0.76 Total: -47.87 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.08 Total: -10.74 kcal Atomic # 14 Polarization: 25.06 SS G_CDS: -4.50 Total: 20.55 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.55 -8.32 -40.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193535609.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.283 kcal (2) G-P(sol) polarization free energy of solvation -32.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds