Wall clock time and date at job start Tue Mar 31 2020 05:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46896 * 110.99810 * 176.05144 * 12 2 1 14 14 C 1.46898 * 110.99849 * 300.00319 * 12 2 1 15 15 C 1.50699 * 109.46914 * 170.00149 * 14 12 2 16 16 O 1.21275 * 120.00169 * 359.97438 * 15 14 12 17 17 N 1.34779 * 120.00026 * 179.97438 * 15 14 12 18 18 C 1.46497 * 119.99766 * 0.02562 * 17 15 14 19 19 C 1.46502 * 120.00151 * 179.97438 * 17 15 14 20 20 C 1.53007 * 109.47053 * 240.00072 * 19 17 15 21 21 C 1.52994 * 109.46745 * 179.97438 * 20 19 17 22 22 C 1.52997 * 109.47498 * 60.00118 * 21 20 19 23 23 C 1.53003 * 109.47220 * 299.99996 * 22 21 20 24 24 C 1.52991 * 109.47158 * 119.99981 * 19 17 15 25 25 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 27 27 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.08996 * 109.47680 * 59.99996 * 13 12 2 30 30 H 1.09002 * 109.47001 * 180.02562 * 13 12 2 31 31 H 1.09001 * 109.47142 * 300.00084 * 13 12 2 32 32 H 1.09005 * 109.47272 * 289.99844 * 14 12 2 33 33 H 1.08997 * 109.47709 * 50.00013 * 14 12 2 34 34 H 1.08995 * 109.47331 * 90.00214 * 18 17 15 35 35 H 1.09010 * 109.46792 * 210.00019 * 18 17 15 36 36 H 1.08997 * 109.47337 * 329.99574 * 18 17 15 37 37 H 1.09004 * 109.46671 * 359.97438 * 19 17 15 38 38 H 1.08996 * 109.47017 * 300.00066 * 20 19 17 39 39 H 1.09005 * 109.46594 * 59.99934 * 20 19 17 40 40 H 1.09006 * 109.47464 * 299.99942 * 21 20 19 41 41 H 1.09002 * 109.46905 * 180.02562 * 21 20 19 42 42 H 1.09002 * 109.47695 * 179.97438 * 22 21 20 43 43 H 1.09006 * 109.46906 * 59.99483 * 22 21 20 44 44 H 1.09006 * 109.46762 * 299.99575 * 23 22 21 45 45 H 1.08997 * 109.47371 * 179.97438 * 23 22 21 46 46 H 1.08999 * 109.47547 * 299.99797 * 24 19 17 47 47 H 1.09004 * 109.47359 * 60.00386 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 3.4850 -0.7943 1.1871 14 6 1.5486 -0.0263 2.4211 15 6 1.8579 -0.8909 3.6159 16 8 2.4154 -1.9573 3.4647 17 7 1.5150 -0.4792 4.8526 18 6 0.8410 0.8087 5.0352 19 6 1.8152 -1.3200 6.0141 20 6 0.5133 -1.6815 6.7322 21 6 0.8268 -2.5601 7.9448 22 6 1.7434 -1.7978 8.9037 23 6 3.0452 -1.4362 8.1858 24 6 2.7315 -0.5571 6.9728 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 0.7088 1.1611 -3.4845 29 1 3.9186 0.2053 1.1592 30 1 3.8209 -1.3114 2.0860 31 1 3.8030 -1.3529 0.3068 32 1 2.0518 0.9348 2.5280 33 1 0.4722 0.1325 2.3564 34 1 -0.2381 0.6648 4.9818 35 1 1.1048 1.2220 6.0088 36 1 1.1550 1.4975 4.2510 37 1 2.3128 -2.2318 5.6837 38 1 0.0154 -0.7700 7.0625 39 1 -0.1395 -2.2251 6.0490 40 1 1.3246 -3.4718 7.6141 41 1 -0.1006 -2.8181 8.4561 42 1 1.9664 -2.4236 9.7679 43 1 1.2456 -0.8862 9.2345 44 1 3.5430 -2.3478 7.8550 45 1 3.6980 -0.8927 8.8688 46 1 3.6589 -0.2996 6.4614 47 1 2.2335 0.3545 7.3032 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193535623.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:04 Heat of formation + Delta-G solvation = -37.778489 kcal Electronic energy + Delta-G solvation = -23407.705182 eV Core-core repulsion = 20204.232869 eV Total energy + Delta-G solvation = -3203.472313 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.12755 -38.22491 -36.33266 -34.89573 -32.70031 -30.96627 -30.35968 -29.12984 -27.67714 -26.70566 -24.82128 -23.59147 -22.80671 -22.21997 -19.98047 -19.55876 -18.66446 -16.89090 -16.44284 -16.05407 -15.52103 -15.04485 -14.76845 -14.37467 -14.22730 -13.95582 -13.74855 -13.43294 -13.00445 -12.97048 -12.57676 -12.47162 -12.37918 -12.35994 -12.14825 -11.57361 -11.34196 -11.30880 -11.05295 -10.94959 -10.85556 -10.75324 -10.63630 -10.47146 -10.41334 -10.12579 -10.05327 -9.91744 -9.14497 -8.84199 -8.47456 -8.39132 -7.11196 -5.99050 -4.02538 3.02525 3.09629 3.35871 3.39120 3.43608 4.43735 4.46651 4.57406 4.69203 4.84299 5.02443 5.04441 5.09303 5.20068 5.25546 5.29501 5.30730 5.34160 5.42048 5.46994 5.54516 5.66708 5.81285 5.83467 5.86692 5.90435 5.91188 5.94175 6.01492 6.16875 6.24060 6.38353 6.49614 6.71014 6.80637 6.95723 7.03987 7.16621 7.47672 7.56182 7.74142 7.86706 8.21810 8.34193 8.55162 8.65786 9.04156 9.62193 11.08120 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038906 B = 0.003379 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.515200 B = 8284.191750 C = 8501.059342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.213 3.787 3 H -0.001 1.001 4 C -0.501 4.501 5 H 0.064 0.936 6 C 0.058 3.942 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.288 1.288 10 H -0.278 1.278 11 H -0.276 1.276 12 N -0.520 5.520 13 C 0.035 3.965 14 C 0.035 3.965 15 C 0.517 3.483 16 O -0.519 6.519 17 N -0.623 5.623 18 C 0.078 3.922 19 C 0.140 3.860 20 C -0.126 4.126 21 C -0.117 4.117 22 C -0.120 4.120 23 C -0.117 4.117 24 C -0.127 4.127 25 H 0.036 0.964 26 H 0.006 0.994 27 H 0.087 0.913 28 H 0.261 0.739 29 H 0.004 0.996 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.048 0.952 33 H 0.102 0.898 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.100 0.900 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.367 0.285 21.925 21.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.107 3.893 3 H 0.016 0.984 4 C -0.540 4.540 5 H 0.083 0.917 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.214 1.214 10 H -0.203 1.203 11 H -0.202 1.202 12 N -0.245 5.245 13 C -0.113 4.113 14 C -0.096 4.096 15 C 0.305 3.695 16 O -0.394 6.394 17 N -0.358 5.358 18 C -0.066 4.066 19 C 0.037 3.963 20 C -0.165 4.165 21 C -0.155 4.155 22 C -0.157 4.157 23 C -0.155 4.155 24 C -0.165 4.165 25 H 0.055 0.945 26 H 0.025 0.975 27 H 0.105 0.895 28 H 0.070 0.930 29 H 0.022 0.978 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.119 0.881 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.118 0.882 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.336 -0.648 21.636 21.648 hybrid contribution 0.466 0.620 -0.819 1.129 sum 0.130 -0.027 20.816 20.817 Atomic orbital electron populations 1.21880 0.97773 0.99798 0.99770 1.19295 0.92293 0.91938 0.85778 0.98393 1.21127 1.30957 1.12304 0.89608 0.91741 1.24923 0.95216 0.95102 0.98999 1.69879 1.37040 1.23116 1.23497 0.86555 0.79106 0.79799 0.81934 1.21392 1.20320 1.20173 1.61874 1.10240 1.51853 1.00563 1.22319 0.87882 0.98562 1.02522 1.22049 1.02661 0.94496 0.90417 1.21065 0.77621 0.87113 0.83666 1.90620 1.40814 1.23068 1.84864 1.48005 1.60898 1.20593 1.06329 1.21744 0.97188 0.85083 1.02576 1.21005 0.95296 0.95019 0.84980 1.21869 0.97441 1.00082 0.97077 1.21500 0.99572 0.98661 0.95779 1.21557 0.96018 1.00218 0.97939 1.21506 0.97366 0.99988 0.96611 1.21890 0.99804 0.98813 0.96043 0.94519 0.97508 0.89450 0.92965 0.97755 0.92089 0.90694 0.93428 0.88053 0.92718 0.91344 0.90845 0.88241 0.91819 0.91546 0.91708 0.91823 0.92038 0.92056 0.91699 0.91852 0.91668 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.29 8.76 37.16 0.33 -2.96 16 2 C 0.21 5.48 2.06 -68.87 -0.14 5.34 16 3 H 0.00 -0.04 8.14 -51.92 -0.42 -0.46 16 4 C -0.50 -14.11 7.93 -34.44 -0.27 -14.38 16 5 H 0.06 1.83 6.39 -52.49 -0.34 1.50 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 7 N -0.90 -25.64 11.32 55.43 0.63 -25.01 16 8 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 9 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 N -0.52 -12.03 4.36 -237.73 -1.04 -13.06 16 13 C 0.04 0.78 8.88 60.06 0.53 1.32 16 14 C 0.04 0.66 3.82 -4.98 -0.02 0.64 16 15 C 0.52 9.15 7.37 -10.98 -0.08 9.07 16 16 O -0.52 -11.01 13.66 5.56 0.08 -10.94 16 17 N -0.62 -8.33 2.76 -173.93 -0.48 -8.81 16 18 C 0.08 0.77 9.30 59.85 0.56 1.33 16 19 C 0.14 1.66 2.52 -67.93 -0.17 1.49 16 20 C -0.13 -1.25 5.20 -26.73 -0.14 -1.39 16 21 C -0.12 -0.97 5.92 -26.74 -0.16 -1.13 16 22 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 23 C -0.12 -0.94 5.93 -26.70 -0.16 -1.10 16 24 C -0.13 -1.22 5.19 -26.71 -0.14 -1.36 16 25 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.01 0.13 6.20 -51.93 -0.32 -0.19 16 27 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 28 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.00 0.09 8.14 -51.93 -0.42 -0.34 16 30 H 0.06 1.30 5.83 -51.93 -0.30 1.00 16 31 H 0.07 1.75 6.23 -51.93 -0.32 1.42 16 32 H 0.05 0.83 7.38 -51.93 -0.38 0.45 16 33 H 0.10 1.82 5.79 -51.93 -0.30 1.52 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.54 6.43 -51.92 -0.33 0.20 16 36 H 0.07 0.73 6.44 -51.93 -0.33 0.40 16 37 H 0.10 1.44 6.90 -51.93 -0.36 1.08 16 38 H 0.06 0.56 7.67 -51.93 -0.40 0.16 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.06 0.55 6.66 -51.93 -0.35 0.20 16 LS Contribution 351.08 15.07 5.29 5.29 Total: -1.00 -31.26 351.08 -8.92 -40.19 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -8.26 Total: -1.75 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -0.12 Total: -2.62 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: -0.89 Total: -46.88 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.08 Total: -10.94 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.26 -8.92 -40.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193535623.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.409 kcal (2) G-P(sol) polarization free energy of solvation -31.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds