Wall clock time and date at job start Tue Mar 31 2020 05:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47124 * 2 1 4 4 C 1.50700 * 109.47609 * 119.99598 * 2 1 3 5 5 H 1.07997 * 120.00208 * 119.99798 * 4 2 1 6 6 C 1.37882 * 119.99944 * 300.00383 * 4 2 1 7 7 N 1.31511 * 119.99927 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99870 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46971 * 60.00444 * 8 6 4 10 10 H 1.48497 * 109.46876 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47243 * 299.99979 * 8 6 4 12 12 N 1.46498 * 109.47167 * 240.00033 * 2 1 3 13 13 C 1.46503 * 119.99877 * 299.99319 * 12 2 1 14 14 C 1.34774 * 120.00530 * 119.99957 * 12 2 1 15 15 O 1.21285 * 119.99830 * 359.97438 * 14 12 2 16 16 C 1.50694 * 120.00468 * 180.02562 * 14 12 2 17 17 C 1.53003 * 109.47563 * 174.62886 * 16 14 12 18 18 C 1.53001 * 109.46843 * 302.62187 * 17 16 14 19 19 N 1.46905 * 109.47103 * 186.08472 * 18 17 16 20 20 C 1.52998 * 109.47155 * 62.62001 * 17 16 14 21 21 C 1.53001 * 109.47093 * 60.00339 * 20 17 16 22 22 C 1.52997 * 109.47328 * 59.99825 * 21 20 17 23 23 C 1.53005 * 109.47151 * 300.00435 * 22 21 20 24 24 C 1.52992 * 109.47231 * 59.99451 * 23 22 21 25 25 H 1.09001 * 109.47124 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47243 * 300.00320 * 1 2 3 27 27 H 1.08997 * 109.47369 * 60.00111 * 1 2 3 28 28 H 0.96996 * 120.00391 * 180.02562 * 7 6 4 29 29 H 1.08992 * 109.47787 * 270.00392 * 13 12 2 30 30 H 1.09005 * 109.47108 * 30.00743 * 13 12 2 31 31 H 1.09005 * 109.47139 * 149.99742 * 13 12 2 32 32 H 1.09004 * 109.47517 * 54.62872 * 16 14 12 33 33 H 1.09001 * 109.47033 * 294.62941 * 16 14 12 34 34 H 1.08993 * 109.47160 * 306.08655 * 18 17 16 35 35 H 1.09003 * 109.47091 * 66.08704 * 18 17 16 36 36 H 1.00902 * 110.99925 * 174.07576 * 19 18 17 37 37 H 1.00898 * 110.99540 * 298.02875 * 19 18 17 38 38 H 1.09002 * 109.47057 * 300.00572 * 20 17 16 39 39 H 1.08997 * 109.47700 * 180.02562 * 20 17 16 40 40 H 1.09002 * 109.47122 * 299.99898 * 21 20 17 41 41 H 1.08999 * 109.46993 * 180.02562 * 21 20 17 42 42 H 1.09002 * 109.46960 * 59.99973 * 22 21 20 43 43 H 1.09001 * 109.47324 * 180.02562 * 22 21 20 44 44 H 1.09000 * 109.46714 * 179.97438 * 23 22 21 45 45 H 1.09002 * 109.46812 * 299.99629 * 23 22 21 46 46 H 1.09002 * 109.47078 * 60.00340 * 24 23 22 47 47 H 1.08995 * 109.47198 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2392 2.4828 7 7 0.9435 0.8303 2.6034 8 14 2.3215 -1.1201 4.0080 9 1 3.8066 -1.1204 4.0082 10 1 1.8271 -0.4196 5.2204 11 1 1.8261 -2.5199 4.0079 12 7 2.0183 -0.6906 -1.1961 13 6 1.6644 -2.0932 -1.4279 14 6 2.7931 -0.0357 -2.0834 15 8 3.0857 1.1256 -1.8917 16 6 3.2949 -0.7459 -3.3141 17 6 4.0318 0.2494 -4.2126 18 6 3.0939 1.4036 -4.5716 19 7 3.7504 2.2824 -5.5488 20 6 5.2539 0.7967 -3.4725 21 6 6.1919 -0.3575 -3.1135 22 6 6.6446 -1.0637 -4.3930 23 6 5.4224 -1.6110 -5.1331 24 6 4.4845 -0.4568 -5.4921 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 0.7095 1.1620 3.4843 29 1 2.4157 -2.7377 -0.9716 30 1 0.6904 -2.3003 -0.9846 31 1 1.6237 -2.2853 -2.5001 32 1 2.4512 -1.1707 -3.8580 33 1 3.9767 -1.5440 -3.0203 34 1 2.1750 1.0049 -5.0013 35 1 2.8574 1.9727 -3.6725 36 1 3.1175 2.9974 -5.8747 37 1 4.5886 2.6901 -5.1624 38 1 4.9314 1.2998 -2.5609 39 1 5.7787 1.5061 -4.1123 40 1 5.6670 -1.0666 -2.4734 41 1 7.0623 0.0324 -2.5858 42 1 7.1695 -0.3546 -5.0331 43 1 7.3124 -1.8863 -4.1372 44 1 5.7449 -2.1137 -6.0449 45 1 4.8975 -2.3201 -4.4930 46 1 5.0094 0.2523 -6.1322 47 1 3.6141 -0.8466 -6.0198 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229409298.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:29 Heat of formation + Delta-G solvation = -72.954105 kcal Electronic energy + Delta-G solvation = -24329.841056 eV Core-core repulsion = 21124.843414 eV Total energy + Delta-G solvation = -3204.997642 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.58721 -39.45401 -37.03161 -35.31558 -34.80189 -32.57125 -31.53521 -31.20243 -28.23450 -27.51855 -27.23566 -25.59760 -23.44587 -23.04760 -21.80018 -20.22293 -18.90515 -18.46783 -17.83771 -17.09188 -16.83458 -16.53015 -16.06916 -15.94090 -15.38714 -15.17514 -14.85482 -14.48035 -14.20305 -14.06261 -13.91600 -13.64010 -13.45197 -13.21169 -13.02171 -12.92238 -12.89358 -12.70499 -12.51529 -12.42618 -12.21786 -12.16099 -12.10882 -11.91071 -11.75830 -11.17279 -11.01526 -10.96793 -10.75512 -10.55219 -10.19956 -9.44011 -9.17599 -8.14401 -6.30925 1.39890 1.42002 1.49406 1.92623 2.35013 2.55998 3.13024 3.64239 3.78263 3.80062 3.93036 4.09993 4.29567 4.34835 4.45936 4.49632 4.55656 4.62764 4.66290 4.73869 4.76566 4.78553 4.81728 4.87947 4.95584 4.98982 5.04325 5.09083 5.10230 5.20337 5.29662 5.30826 5.41997 5.46207 5.50860 5.53741 5.64070 5.65928 5.74086 5.77658 6.07094 6.18048 6.25650 6.62528 6.77655 6.94002 7.35599 7.60155 8.89237 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022012 B = 0.004863 C = 0.004548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.699689 B = 5756.106122 C = 6155.260175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.263 3.737 3 H 0.008 0.992 4 C -0.536 4.536 5 H 0.058 0.942 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.962 3.038 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.263 1.263 12 N -0.605 5.605 13 C 0.083 3.917 14 C 0.493 3.507 15 O -0.585 6.585 16 C -0.124 4.124 17 C -0.026 4.026 18 C 0.061 3.939 19 N -0.840 5.840 20 C -0.116 4.116 21 C -0.120 4.120 22 C -0.111 4.111 23 C -0.122 4.122 24 C -0.088 4.088 25 H 0.046 0.954 26 H 0.065 0.935 27 H 0.018 0.982 28 H 0.264 0.736 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.061 0.939 35 H 0.025 0.975 36 H 0.343 0.657 37 H 0.339 0.661 38 H 0.050 0.950 39 H 0.062 0.938 40 H 0.047 0.953 41 H 0.052 0.948 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.075 0.925 45 H 0.063 0.937 46 H 0.074 0.926 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.266 -6.361 -16.404 18.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.161 3.839 3 H 0.026 0.974 4 C -0.575 4.575 5 H 0.076 0.924 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.787 3.213 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.187 1.187 12 N -0.336 5.336 13 C -0.060 4.060 14 C 0.283 3.717 15 O -0.467 6.467 16 C -0.164 4.164 17 C -0.027 4.027 18 C -0.070 4.070 19 N -0.369 5.369 20 C -0.153 4.153 21 C -0.158 4.158 22 C -0.148 4.148 23 C -0.159 4.159 24 C -0.126 4.126 25 H 0.065 0.935 26 H 0.084 0.916 27 H 0.037 0.963 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.112 0.888 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.079 0.921 35 H 0.043 0.957 36 H 0.155 0.845 37 H 0.151 0.849 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.082 0.918 46 H 0.092 0.908 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.375 -6.331 -16.597 18.873 hybrid contribution -0.189 0.873 2.193 2.368 sum 6.186 -5.458 -14.403 16.599 Atomic orbital electron populations 1.21869 0.97495 0.99940 0.99757 1.18443 0.91347 0.92162 0.81942 0.97388 1.21553 1.31722 1.12922 0.91301 0.92424 1.25721 0.95122 0.95647 1.01971 1.70013 1.37409 1.23909 1.24382 0.85552 0.78366 0.79047 0.78310 1.20378 1.20911 1.18717 1.48275 1.49515 1.13225 1.22609 1.21782 1.01253 0.80778 1.02156 1.21392 0.77977 0.86927 0.85376 1.90511 1.59139 1.19208 1.77857 1.21936 1.01876 0.99566 0.92977 1.20189 0.94107 0.93666 0.94700 1.21949 0.96331 0.94935 0.93740 1.58819 1.10584 1.26166 1.41317 1.21699 0.95537 0.97950 1.00162 1.21550 0.98497 0.97539 0.98177 1.21489 0.97854 0.99768 0.95727 1.21637 0.96063 0.97721 1.00510 1.21380 0.99200 0.96950 0.95023 0.93512 0.91607 0.96252 0.92723 0.92967 0.91441 0.88770 0.87443 0.87457 0.92057 0.95718 0.84518 0.84879 0.93145 0.91943 0.93417 0.92914 0.91754 0.91502 0.90609 0.91831 0.90768 0.91779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.43 8.95 71.98 0.64 -5.79 16 2 C 0.26 13.77 2.63 44.24 0.12 13.89 16 3 H 0.01 0.51 6.90 -2.39 -0.02 0.49 16 4 C -0.54 -29.43 8.37 25.60 0.21 -29.22 16 5 H 0.06 3.08 7.65 -2.91 -0.02 3.06 16 6 C 0.01 0.82 5.30 84.66 0.45 1.27 16 7 N -0.92 -53.46 11.32 21.45 0.24 -53.22 16 8 Si 0.96 43.44 29.54 68.60 2.03 45.47 16 9 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 12 N -0.61 -25.36 2.75 -826.81 -2.28 -27.64 16 13 C 0.08 2.60 9.51 127.77 1.21 3.81 16 14 C 0.49 19.60 7.09 87.66 0.62 20.23 16 15 O -0.59 -27.92 10.72 -3.04 -0.03 -27.96 16 16 C -0.12 -3.40 2.78 29.85 0.08 -3.32 16 17 C -0.03 -0.67 0.34 -52.18 -0.02 -0.68 16 18 C 0.06 1.73 5.29 86.30 0.46 2.19 16 19 N -0.84 -19.24 8.55 -186.71 -1.60 -20.84 16 20 C -0.12 -3.35 4.25 30.59 0.13 -3.22 16 21 C -0.12 -3.08 5.65 30.59 0.17 -2.90 16 22 C -0.11 -2.14 5.92 30.59 0.18 -1.96 16 23 C -0.12 -2.14 5.65 30.59 0.17 -1.97 16 24 C -0.09 -1.78 4.50 30.59 0.14 -1.64 16 25 H 0.05 2.06 6.66 -2.39 -0.02 2.05 16 26 H 0.07 3.57 6.07 -2.39 -0.01 3.56 16 27 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 29 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.07 2.17 6.43 -2.38 -0.02 2.15 16 31 H 0.09 2.14 6.29 -2.38 -0.02 2.12 16 32 H 0.11 2.42 7.11 -2.38 -0.02 2.40 16 33 H 0.11 2.70 4.81 -2.39 -0.01 2.69 16 34 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.02 0.91 5.66 -2.39 -0.01 0.90 16 36 H 0.34 6.92 9.08 -89.69 -0.81 6.11 16 37 H 0.34 7.69 7.51 -89.70 -0.67 7.02 16 38 H 0.05 1.93 5.55 -2.39 -0.01 1.91 16 39 H 0.06 1.65 6.85 -2.39 -0.02 1.63 16 40 H 0.05 1.34 6.37 -2.39 -0.02 1.32 16 41 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.06 1.18 8.14 -2.39 -0.02 1.17 16 43 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.06 1.10 6.49 -2.39 -0.02 1.08 16 46 H 0.07 1.57 7.45 -2.39 -0.02 1.55 16 47 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -66.30 340.76 2.43 -63.87 By element: Atomic # 1 Polarization: 30.14 SS G_CDS: -0.51 Total: 29.63 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: 4.58 Total: -9.32 kcal Atomic # 7 Polarization: -98.07 SS G_CDS: -3.63 Total: -101.70 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.03 Total: -27.96 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -66.30 2.43 -63.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229409298.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.084 kcal (2) G-P(sol) polarization free energy of solvation -66.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds