Wall clock time and date at job start Tue Mar 31 2020 05:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46592 * 2 1 4 4 C 1.53005 * 109.47273 * 240.00038 * 2 1 3 5 5 C 1.50698 * 109.46908 * 64.99995 * 4 2 1 6 6 O 1.21280 * 120.00622 * 359.97438 * 5 4 2 7 7 N 1.34782 * 119.99896 * 180.02562 * 5 4 2 8 8 C 1.46508 * 119.99778 * 359.97438 * 7 5 4 9 9 C 1.46490 * 120.00322 * 179.97438 * 7 5 4 10 10 H 1.09008 * 109.47194 * 359.97438 * 9 7 5 11 11 C 1.52997 * 109.47412 * 119.99631 * 9 7 5 12 12 C 1.50703 * 109.47341 * 239.99633 * 9 7 5 13 13 H 1.07998 * 119.99757 * 0.02562 * 12 9 7 14 14 C 1.37873 * 120.00339 * 179.97438 * 12 9 7 15 15 N 1.31518 * 119.99747 * 0.02562 * 14 12 9 16 16 Si 1.86804 * 120.00290 * 180.02562 * 14 12 9 17 17 H 1.48499 * 109.46911 * 60.00601 * 16 14 12 18 18 H 1.48500 * 109.47079 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.46818 * 300.00507 * 16 14 12 20 20 C 1.53000 * 109.47013 * 119.99672 * 2 1 3 21 21 H 1.08997 * 109.53219 * 60.10619 * 20 2 1 22 22 C 1.53123 * 109.49034 * 180.20387 * 20 2 1 23 23 C 1.53127 * 109.15019 * 177.60705 * 22 20 2 24 24 C 1.53042 * 109.27596 * 302.34079 * 23 22 20 25 25 N 1.46843 * 109.52278 * 59.17923 * 24 23 22 26 26 C 1.46847 * 111.20124 * 298.25596 * 25 24 23 27 27 H 1.08998 * 109.46960 * 60.00334 * 1 2 3 28 28 H 1.09004 * 109.46592 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47215 * 300.00272 * 1 2 3 30 30 H 1.08998 * 109.47163 * 184.99824 * 4 2 1 31 31 H 1.08999 * 109.46964 * 305.00063 * 4 2 1 32 32 H 1.08998 * 109.47134 * 89.99878 * 8 7 5 33 33 H 1.08995 * 109.46955 * 210.00723 * 8 7 5 34 34 H 1.09005 * 109.46931 * 330.00243 * 8 7 5 35 35 H 1.08998 * 109.47440 * 180.02562 * 11 9 7 36 36 H 1.08997 * 109.47424 * 300.00253 * 11 9 7 37 37 H 1.09000 * 109.47123 * 59.99911 * 11 9 7 38 38 H 0.97001 * 119.99788 * 179.97438 * 15 14 12 39 39 H 1.09003 * 109.53012 * 57.70277 * 22 20 2 40 40 H 1.08997 * 109.57453 * 297.53555 * 22 20 2 41 41 H 1.08997 * 109.49981 * 182.39822 * 23 22 20 42 42 H 1.08998 * 109.53089 * 62.30397 * 23 22 20 43 43 H 1.08993 * 109.46299 * 299.16259 * 24 23 22 44 44 H 1.09000 * 109.45057 * 179.19029 * 24 23 22 45 45 H 1.00902 * 110.99874 * 174.15812 * 25 24 23 46 46 H 1.09002 * 109.46481 * 181.76055 * 26 25 24 47 47 H 1.08994 * 109.46283 * 301.73908 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 1.6414 0.0571 -2.4766 6 8 1.0110 1.0869 -2.3634 7 7 1.9846 -0.3919 -3.7002 8 6 2.7456 -1.6363 -3.8370 9 6 1.5966 0.3643 -4.8933 10 1 1.0406 1.2533 -4.5952 11 6 2.8512 0.7813 -5.6633 12 6 0.7297 -0.4976 -5.7746 13 1 0.4913 -1.5076 -5.4756 14 6 0.2401 0.0035 -6.9621 15 7 0.5301 1.2336 -7.3260 16 14 -0.8350 -1.0648 -8.0541 17 1 -2.0526 -1.4692 -7.3064 18 1 -1.2282 -0.2982 -9.2637 19 1 -0.0784 -2.2762 -8.4606 20 6 2.0400 -0.7212 1.2493 21 1 1.6788 -1.7496 1.2494 22 6 3.5712 -0.7170 1.2523 23 6 4.0728 -1.3874 2.5344 24 6 3.5041 -0.6474 3.7473 25 7 2.0368 -0.6800 3.6984 26 6 1.5303 -0.0003 2.4993 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 3.1264 -0.7994 -1.2056 31 1 1.6054 -1.7198 -1.2952 32 1 2.0563 -2.4763 -3.9222 33 1 3.3682 -1.5850 -4.7302 34 1 3.3787 -1.7733 -2.9603 35 1 2.5625 1.3444 -6.5508 36 1 3.4782 1.4048 -5.0260 37 1 3.4068 -0.1078 -5.9614 38 1 0.1859 1.5860 -8.1616 39 1 3.9329 0.3105 1.2130 40 1 3.9396 -1.2663 0.3859 41 1 5.1618 -1.3496 2.5627 42 1 3.7441 -2.4264 2.5549 43 1 3.8450 0.3878 3.7338 44 1 3.8478 -1.1311 4.6616 45 1 1.6382 -0.2817 4.5354 46 1 0.4403 -0.0138 2.5072 47 1 1.8806 1.0318 2.4915 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251714780.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:18 Heat of formation + Delta-G solvation = -56.075383 kcal Electronic energy + Delta-G solvation = -23359.134234 eV Core-core repulsion = 20154.868507 eV Total energy + Delta-G solvation = -3204.265726 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.70554 -38.59429 -35.64616 -34.64654 -32.82403 -31.95787 -30.15369 -29.13334 -27.34161 -26.01537 -25.17688 -23.73517 -23.61010 -21.29079 -20.12515 -19.59815 -18.11841 -16.98124 -16.43025 -15.90150 -15.48247 -15.06944 -14.67766 -14.44851 -14.16828 -13.94501 -13.84191 -13.27208 -13.23530 -12.87437 -12.59801 -12.40976 -12.20602 -11.97307 -11.59098 -11.52950 -11.49499 -11.13916 -11.08002 -10.98977 -10.88105 -10.76779 -10.65260 -10.40451 -10.26945 -10.18011 -10.13091 -10.02373 -9.14721 -8.75484 -8.64788 -8.39292 -7.51657 -6.04817 -4.12751 3.29122 3.34069 3.35552 3.49099 3.92987 4.11553 4.42132 4.61592 4.74730 4.79769 4.95745 5.10662 5.23659 5.25945 5.28593 5.42379 5.44992 5.51363 5.60083 5.62594 5.70900 5.79363 5.82617 5.92219 5.94494 5.97031 6.01202 6.11042 6.15248 6.26819 6.33395 6.35126 6.61922 6.73058 6.78907 6.85071 6.88458 7.09198 7.16909 7.49206 7.56758 7.75147 8.05011 8.23551 8.60603 8.87097 9.14864 9.54030 11.00387 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033079 B = 0.003496 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.253235 B = 8008.032411 C = 8234.176595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.067 4.067 3 H 0.074 0.926 4 C -0.136 4.136 5 C 0.503 3.497 6 O -0.552 6.552 7 N -0.596 5.596 8 C 0.088 3.912 9 C 0.258 3.742 10 H 0.063 0.937 11 C -0.147 4.147 12 C -0.525 4.525 13 H 0.058 0.942 14 C 0.064 3.936 15 N -0.889 5.889 16 Si 0.898 3.102 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.277 1.277 20 C -0.079 4.079 21 H 0.077 0.923 22 C -0.121 4.121 23 C -0.118 4.118 24 C 0.057 3.943 25 N -0.692 5.692 26 C 0.061 3.939 27 H 0.080 0.920 28 H 0.046 0.954 29 H 0.048 0.952 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.047 0.953 33 H 0.071 0.929 34 H 0.051 0.949 35 H 0.093 0.907 36 H 0.010 0.990 37 H 0.029 0.971 38 H 0.263 0.737 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.027 0.973 44 H 0.070 0.930 45 H 0.340 0.660 46 H 0.078 0.922 47 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.847 -5.384 18.159 20.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.086 4.086 3 H 0.093 0.907 4 C -0.176 4.176 5 C 0.290 3.710 6 O -0.431 6.431 7 N -0.327 5.327 8 C -0.056 4.056 9 C 0.157 3.843 10 H 0.081 0.919 11 C -0.205 4.205 12 C -0.563 4.563 13 H 0.076 0.924 14 C -0.138 4.138 15 N -0.527 5.527 16 Si 0.726 3.274 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.203 1.203 20 C -0.097 4.097 21 H 0.096 0.904 22 C -0.158 4.158 23 C -0.155 4.155 24 C -0.072 4.072 25 N -0.323 5.323 26 C -0.068 4.068 27 H 0.099 0.901 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.111 0.889 36 H 0.029 0.971 37 H 0.048 0.952 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.046 0.954 44 H 0.088 0.912 45 H 0.157 0.843 46 H 0.097 0.903 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 6.466 -5.329 17.744 19.623 hybrid contribution -0.321 0.204 -0.505 0.633 sum 6.145 -5.124 17.239 19.005 Atomic orbital electron populations 1.21986 0.94706 1.01349 1.02986 1.20857 0.96564 0.99456 0.91765 0.90721 1.21807 1.02064 1.00221 0.93524 1.20446 0.80065 0.85865 0.84640 1.90598 1.40916 1.25304 1.86318 1.48252 1.53346 1.23903 1.07214 1.21534 0.95537 0.87173 1.01400 1.18896 0.92727 0.92594 0.80048 0.91943 1.22093 0.97155 0.99252 1.02046 1.21302 1.30808 0.99772 1.04464 0.92408 1.24895 0.96213 0.95098 0.97604 1.69874 1.44939 1.14646 1.23273 0.86563 0.80867 0.80235 0.79762 1.20247 1.21191 1.20259 1.21229 0.94832 1.00282 0.93400 0.90435 1.21724 0.95689 1.00826 0.97598 1.21589 0.99416 1.00286 0.94246 1.21918 0.88071 0.98464 0.98792 1.60271 1.06823 1.60089 1.05073 1.22033 0.99981 0.94944 0.89808 0.90094 0.93503 0.93313 0.89594 0.89648 0.93429 0.91040 0.93011 0.88869 0.97063 0.95169 0.92678 0.92251 0.91359 0.91826 0.91220 0.95430 0.91172 0.84261 0.90329 0.95230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 8.58 37.16 0.32 -1.91 16 2 C -0.07 -0.92 1.62 -90.62 -0.15 -1.06 16 3 H 0.07 1.14 7.96 -51.93 -0.41 0.73 16 4 C -0.14 -1.99 3.52 -27.88 -0.10 -2.09 16 5 C 0.50 10.25 7.39 -10.98 -0.08 10.17 16 6 O -0.55 -13.28 13.29 5.56 0.07 -13.20 16 7 N -0.60 -12.75 2.75 -175.26 -0.48 -13.23 16 8 C 0.09 1.48 9.48 59.85 0.57 2.04 16 9 C 0.26 6.65 2.63 -69.09 -0.18 6.47 16 10 H 0.06 1.87 6.90 -51.92 -0.36 1.51 16 11 C -0.15 -3.56 8.95 37.16 0.33 -3.22 16 12 C -0.52 -14.35 8.37 -34.44 -0.29 -14.64 16 13 H 0.06 1.56 7.65 -52.49 -0.40 1.16 16 14 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 15 N -0.89 -25.41 11.32 55.43 0.63 -24.79 16 16 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 C -0.08 -0.87 1.94 -90.54 -0.18 -1.05 16 21 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 22 C -0.12 -1.22 4.87 -26.60 -0.13 -1.35 16 23 C -0.12 -1.04 6.09 -26.64 -0.16 -1.20 16 24 C 0.06 0.49 6.55 -3.83 -0.03 0.46 16 25 N -0.69 -6.45 6.84 -113.82 -0.78 -7.22 16 26 C 0.06 0.64 5.46 -3.84 -0.02 0.62 16 27 H 0.08 1.48 5.95 -51.93 -0.31 1.17 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.62 6.45 -51.93 -0.34 0.28 16 30 H 0.09 1.09 5.50 -51.93 -0.29 0.81 16 31 H 0.09 1.16 8.11 -51.93 -0.42 0.74 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 1.22 6.43 -51.93 -0.33 0.89 16 34 H 0.05 0.68 6.44 -51.93 -0.33 0.35 16 35 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 36 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 37 H 0.03 0.67 6.66 -51.93 -0.35 0.32 16 38 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.67 6.47 -51.93 -0.34 0.33 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.34 2.58 8.90 -39.29 -0.35 2.23 16 46 H 0.08 0.81 6.48 -51.93 -0.34 0.48 16 47 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 351.51 15.07 5.30 5.30 Total: -1.00 -30.65 351.51 -8.71 -39.36 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -8.24 Total: 2.68 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -0.19 Total: -5.10 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: -0.63 Total: -45.24 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.07 Total: -13.20 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.65 -8.71 -39.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251714780.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.719 kcal (2) G-P(sol) polarization free energy of solvation -30.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds