Wall clock time and date at job start Tue Mar 31 2020 05:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47057 * 2 1 4 4 C 1.53004 * 109.46859 * 240.00594 * 2 1 3 5 5 C 1.50702 * 109.47499 * 64.99547 * 4 2 1 6 6 O 1.21282 * 119.99614 * 0.02562 * 5 4 2 7 7 N 1.34773 * 120.00126 * 179.97438 * 5 4 2 8 8 C 1.46505 * 119.99838 * 0.02562 * 7 5 4 9 9 C 1.46500 * 120.00007 * 180.02562 * 7 5 4 10 10 H 1.09001 * 109.47297 * 0.02562 * 9 7 5 11 11 C 1.53006 * 109.46998 * 240.00425 * 9 7 5 12 12 C 1.50698 * 109.46840 * 120.00599 * 9 7 5 13 13 H 1.07993 * 120.00472 * 0.02562 * 12 9 7 14 14 C 1.37882 * 119.99554 * 180.02562 * 12 9 7 15 15 N 1.31515 * 120.00420 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 119.99716 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.47454 * 59.99745 * 16 14 12 18 18 H 1.48503 * 109.46926 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47302 * 299.99567 * 16 14 12 20 20 C 1.52996 * 109.47324 * 120.00638 * 2 1 3 21 21 H 1.09001 * 109.50546 * 59.99604 * 20 2 1 22 22 C 1.53118 * 109.50418 * 180.02562 * 20 2 1 23 23 C 1.53117 * 109.16140 * 177.55558 * 22 20 2 24 24 C 1.53039 * 109.30952 * 302.40275 * 23 22 20 25 25 N 1.46849 * 109.52316 * 59.15758 * 24 23 22 26 26 C 1.46849 * 111.19540 * 298.25961 * 25 24 23 27 27 H 1.08995 * 109.47228 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46830 * 299.99906 * 1 2 3 29 29 H 1.08999 * 109.47184 * 59.99322 * 1 2 3 30 30 H 1.09002 * 109.47244 * 304.99811 * 4 2 1 31 31 H 1.08996 * 109.47110 * 185.00329 * 4 2 1 32 32 H 1.08999 * 109.46748 * 269.99069 * 8 7 5 33 33 H 1.08997 * 109.47257 * 29.99586 * 8 7 5 34 34 H 1.09002 * 109.46769 * 149.99443 * 8 7 5 35 35 H 1.09001 * 109.47002 * 179.97438 * 11 9 7 36 36 H 1.08993 * 109.46955 * 300.00226 * 11 9 7 37 37 H 1.09000 * 109.47050 * 60.00054 * 11 9 7 38 38 H 0.97001 * 120.00306 * 180.02562 * 15 14 12 39 39 H 1.09000 * 109.52154 * 297.49688 * 22 20 2 40 40 H 1.08996 * 109.52571 * 57.68455 * 22 20 2 41 41 H 1.08998 * 109.50701 * 182.44335 * 23 22 20 42 42 H 1.08998 * 109.50239 * 62.35759 * 23 22 20 43 43 H 1.09004 * 109.46268 * 299.14442 * 24 23 22 44 44 H 1.08995 * 109.45579 * 179.17102 * 24 23 22 45 45 H 1.00898 * 110.99862 * 174.16276 * 25 24 23 46 46 H 1.08999 * 109.46680 * 301.72094 * 26 25 24 47 47 H 1.09008 * 109.45331 * 181.75341 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6412 0.0572 -2.4767 6 8 1.0116 1.0875 -2.3632 7 7 1.9852 -0.3912 -3.7002 8 6 2.7462 -1.6355 -3.8372 9 6 1.5980 0.3658 -4.8933 10 1 1.0427 1.2550 -4.5951 11 6 0.7183 -0.5089 -5.7889 12 6 2.8344 0.7765 -5.6507 13 1 3.8108 0.5010 -5.2807 14 6 2.7189 1.5042 -6.8161 15 7 1.5298 1.8394 -7.2671 16 14 4.2514 2.0140 -7.7546 17 1 5.0087 0.8030 -8.1613 18 1 3.8590 2.7812 -8.9640 19 1 5.1050 2.8627 -6.8849 20 6 2.0401 -0.7214 1.2491 21 1 1.6770 -1.7491 1.2496 22 6 3.5712 -0.7212 1.2501 23 6 4.0730 -1.3906 2.5326 24 6 3.5071 -0.6485 3.7455 25 7 2.0397 -0.6783 3.6983 26 6 1.5332 0.0014 2.4992 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.6054 -1.7197 -1.2954 31 1 3.1262 -0.7994 -1.2057 32 1 3.8131 -1.4127 -3.8191 33 1 2.5007 -2.3043 -3.0122 34 1 2.4912 -2.1153 -4.7821 35 1 0.4298 0.0545 -6.6764 36 1 1.2738 -1.3979 -6.0871 37 1 -0.1760 -0.8060 -5.2411 38 1 1.4485 2.3510 -8.0872 39 1 3.9361 -1.2730 0.3838 40 1 3.9355 0.3053 1.2092 41 1 5.1621 -1.3548 2.5597 42 1 3.7423 -2.4289 2.5545 43 1 3.8500 0.3861 3.7308 44 1 3.8510 -1.1321 4.6598 45 1 1.6429 -0.2785 4.5354 46 1 1.8852 1.0329 2.4903 47 1 0.4432 -0.0102 2.5085 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251714786.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:20 Heat of formation + Delta-G solvation = -56.135322 kcal Electronic energy + Delta-G solvation = -23366.267440 eV Core-core repulsion = 20161.999115 eV Total energy + Delta-G solvation = -3204.268325 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.70276 -38.58953 -35.64614 -34.64679 -32.82537 -31.94753 -30.15161 -29.13802 -27.34824 -26.01109 -25.18091 -23.73553 -23.60434 -21.29481 -20.11545 -19.58897 -18.12573 -16.96950 -16.45657 -15.91823 -15.35631 -15.12638 -14.70338 -14.43304 -14.15979 -13.94082 -13.84343 -13.34907 -13.20965 -12.84214 -12.59738 -12.40569 -12.16958 -12.04232 -11.58957 -11.52597 -11.44965 -11.19814 -11.05026 -11.03611 -10.83300 -10.79051 -10.61953 -10.39282 -10.23856 -10.22819 -10.13963 -10.02520 -9.13856 -8.76556 -8.64422 -8.39379 -7.51531 -6.05064 -4.12976 3.28627 3.33642 3.35055 3.49225 3.93124 4.11798 4.41842 4.62451 4.75914 4.80861 4.96654 5.10654 5.25130 5.25874 5.28262 5.44027 5.46833 5.50608 5.61633 5.62752 5.70710 5.75523 5.86849 5.92227 5.94032 5.96805 6.01539 6.08853 6.16513 6.27347 6.33114 6.34481 6.61606 6.69368 6.79305 6.85435 6.87738 7.09371 7.17338 7.49302 7.56759 7.74990 8.04982 8.23449 8.60624 8.86853 9.14853 9.53737 11.00133 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027171 B = 0.003640 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.265624 B = 7690.607286 C = 8077.250159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.068 4.068 3 H 0.075 0.925 4 C -0.136 4.136 5 C 0.503 3.497 6 O -0.552 6.552 7 N -0.596 5.596 8 C 0.087 3.913 9 C 0.258 3.742 10 H 0.063 0.937 11 C -0.147 4.147 12 C -0.525 4.525 13 H 0.057 0.943 14 C 0.064 3.936 15 N -0.889 5.889 16 Si 0.898 3.102 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.277 1.277 20 C -0.078 4.078 21 H 0.077 0.923 22 C -0.121 4.121 23 C -0.117 4.117 24 C 0.057 3.943 25 N -0.692 5.692 26 C 0.061 3.939 27 H 0.045 0.955 28 H 0.048 0.952 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.047 0.953 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.029 0.971 37 H 0.011 0.989 38 H 0.263 0.737 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.028 0.972 44 H 0.070 0.930 45 H 0.340 0.660 46 H 0.030 0.970 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.593 -7.965 17.905 19.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.087 4.087 3 H 0.094 0.906 4 C -0.176 4.176 5 C 0.290 3.710 6 O -0.431 6.431 7 N -0.327 5.327 8 C -0.057 4.057 9 C 0.157 3.843 10 H 0.081 0.919 11 C -0.205 4.205 12 C -0.564 4.564 13 H 0.076 0.924 14 C -0.138 4.138 15 N -0.527 5.527 16 Si 0.726 3.274 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.203 1.203 20 C -0.097 4.097 21 H 0.095 0.905 22 C -0.159 4.159 23 C -0.155 4.155 24 C -0.073 4.073 25 N -0.323 5.323 26 C -0.068 4.068 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.111 0.889 36 H 0.048 0.952 37 H 0.030 0.970 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.046 0.954 44 H 0.088 0.912 45 H 0.157 0.843 46 H 0.048 0.952 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.150 -7.946 17.487 19.327 hybrid contribution 1.161 1.101 -0.421 1.655 sum 3.311 -6.845 17.065 18.683 Atomic orbital electron populations 1.21981 0.94806 1.01202 1.02958 1.20863 0.96450 0.99617 0.91793 0.90617 1.21806 1.02336 0.99952 0.93517 1.20444 0.80082 0.85855 0.84634 1.90599 1.41294 1.24975 1.86272 1.48250 1.53235 1.23951 1.07275 1.21536 0.95895 0.86486 1.01748 1.18899 0.94776 0.90768 0.79818 0.91945 1.22093 0.96769 0.99386 1.02297 1.21300 0.92550 1.34845 1.07674 0.92429 1.24896 0.96160 0.95578 0.97178 1.69870 1.22002 1.38386 1.22445 0.86565 0.83044 0.78664 0.79156 1.20255 1.21179 1.20280 1.21221 0.94912 1.00178 0.93377 0.90497 1.21726 0.95634 1.00931 0.97602 1.21584 0.99466 1.00232 0.94237 1.21922 0.88037 0.98505 0.98797 1.60277 1.06914 1.60012 1.05051 1.22034 0.99924 0.94996 0.89823 0.93577 0.93269 0.90222 0.89748 0.89491 0.93478 0.92954 0.91026 0.88878 0.95170 0.97025 0.92669 0.91294 0.92197 0.91804 0.91254 0.95402 0.91171 0.84279 0.95195 0.90373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 8.58 37.16 0.32 -1.82 16 2 C -0.07 -0.93 1.62 -90.62 -0.15 -1.07 16 3 H 0.08 1.19 7.95 -51.93 -0.41 0.77 16 4 C -0.14 -1.99 3.51 -27.88 -0.10 -2.09 16 5 C 0.50 10.25 7.39 -10.99 -0.08 10.17 16 6 O -0.55 -13.28 13.29 5.56 0.07 -13.21 16 7 N -0.60 -12.75 2.75 -175.25 -0.48 -13.23 16 8 C 0.09 1.47 9.48 59.85 0.57 2.04 16 9 C 0.26 6.65 2.64 -69.08 -0.18 6.47 16 10 H 0.06 1.87 6.90 -51.93 -0.36 1.51 16 11 C -0.15 -3.55 8.95 37.16 0.33 -3.22 16 12 C -0.52 -14.36 8.37 -34.44 -0.29 -14.65 16 13 H 0.06 1.55 7.64 -52.49 -0.40 1.15 16 14 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 15 N -0.89 -25.40 11.32 55.43 0.63 -24.77 16 16 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 C -0.08 -0.87 1.94 -90.54 -0.18 -1.04 16 21 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 22 C -0.12 -1.27 4.87 -26.61 -0.13 -1.40 16 23 C -0.12 -1.07 6.09 -26.65 -0.16 -1.23 16 24 C 0.06 0.50 6.55 -3.83 -0.03 0.47 16 25 N -0.69 -6.47 6.85 -113.81 -0.78 -7.25 16 26 C 0.06 0.64 5.46 -3.83 -0.02 0.62 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.61 6.45 -51.93 -0.34 0.27 16 29 H 0.08 1.39 5.95 -51.93 -0.31 1.08 16 30 H 0.08 1.09 7.40 -51.93 -0.38 0.71 16 31 H 0.09 1.16 6.20 -51.93 -0.32 0.84 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.69 6.44 -51.93 -0.33 0.36 16 34 H 0.07 1.23 6.43 -51.93 -0.33 0.89 16 35 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 36 H 0.03 0.67 6.66 -51.93 -0.35 0.32 16 37 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 38 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.07 0.71 6.47 -51.93 -0.34 0.37 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.34 2.59 8.90 -39.29 -0.35 2.24 16 46 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.08 0.80 6.48 -51.92 -0.34 0.46 16 LS Contribution 351.51 15.07 5.30 5.30 Total: -1.00 -30.65 351.51 -8.71 -39.36 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -8.24 Total: 2.70 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -0.19 Total: -5.09 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: -0.63 Total: -45.25 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.07 Total: -13.21 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.65 -8.71 -39.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251714786.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.780 kcal (2) G-P(sol) polarization free energy of solvation -30.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds