Wall clock time and date at job start Tue Mar 31 2020 05:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.53006 * 109.47164 * 240.00051 * 2 1 3 5 5 C 1.53772 * 113.61475 * 157.49598 * 4 2 1 6 6 C 1.53781 * 87.08354 * 220.02318 * 5 4 2 7 7 C 1.53781 * 113.61135 * 59.99693 * 4 2 1 8 8 N 1.46902 * 109.47489 * 120.00408 * 2 1 3 9 9 C 1.46907 * 110.99981 * 58.94969 * 8 2 1 10 10 C 1.46908 * 110.99638 * 295.00301 * 8 2 1 11 11 C 1.53002 * 109.46604 * 189.99929 * 10 8 2 12 12 C 1.50703 * 109.46386 * 179.97438 * 11 10 8 13 13 O 1.21274 * 120.00713 * 0.02562 * 12 11 10 14 14 N 1.34781 * 119.99730 * 179.97438 * 12 11 10 15 15 C 1.46503 * 119.99904 * 0.02562 * 14 12 11 16 16 C 1.46497 * 120.00270 * 179.97438 * 14 12 11 17 17 C 1.50701 * 109.46799 * 90.00418 * 16 14 12 18 18 H 1.07999 * 120.00248 * 359.97438 * 17 16 14 19 19 C 1.37875 * 119.99879 * 180.02562 * 17 16 14 20 20 N 1.31517 * 120.00126 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99996 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47596 * 59.99501 * 21 19 17 23 23 H 1.48504 * 109.47392 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47008 * 299.99413 * 21 19 17 25 25 H 1.09001 * 109.47375 * 59.99983 * 1 2 3 26 26 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47230 * 299.99144 * 1 2 3 28 28 H 1.09000 * 112.84759 * 288.80595 * 4 2 1 29 29 H 1.09000 * 113.61922 * 334.57064 * 5 4 2 30 30 H 1.08999 * 113.61689 * 105.47008 * 5 4 2 31 31 H 1.09005 * 113.61134 * 270.88438 * 6 5 4 32 32 H 1.08994 * 113.69575 * 139.99585 * 6 5 4 33 33 H 1.09000 * 113.61578 * 254.52872 * 7 4 2 34 34 H 1.09003 * 113.61302 * 25.43614 * 7 4 2 35 35 H 1.08999 * 109.46864 * 60.00301 * 9 8 2 36 36 H 1.09003 * 109.46529 * 180.02562 * 9 8 2 37 37 H 1.08996 * 109.47103 * 300.00462 * 9 8 2 38 38 H 1.09000 * 109.46788 * 309.99252 * 10 8 2 39 39 H 1.08996 * 109.47355 * 69.99505 * 10 8 2 40 40 H 1.08993 * 109.47225 * 299.99453 * 11 10 8 41 41 H 1.09000 * 109.47082 * 60.00216 * 11 10 8 42 42 H 1.09000 * 109.47338 * 89.99771 * 15 14 12 43 43 H 1.08999 * 109.46710 * 209.99670 * 15 14 12 44 44 H 1.08999 * 109.46887 * 329.99514 * 15 14 12 45 45 H 1.08994 * 109.47311 * 210.00312 * 16 14 12 46 46 H 1.08999 * 109.46894 * 330.00884 * 16 14 12 47 47 H 0.96998 * 119.99788 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.4725 -0.3277 -1.6461 6 6 2.9921 -0.3572 -3.1066 7 6 1.5810 -0.0723 -2.5657 8 7 2.0197 -0.6926 1.1994 9 6 1.5283 -2.0762 1.2459 10 6 1.6487 0.0390 2.4181 11 6 2.3790 -0.5664 3.6185 12 6 1.9988 0.1845 4.8686 13 8 1.2202 1.1122 4.8057 14 7 2.5234 -0.1755 6.0568 15 6 3.4635 -1.2965 6.1329 16 6 2.1543 0.5548 7.2720 17 6 0.9433 -0.0890 7.8965 18 1 0.4933 -0.9552 7.4343 19 6 0.4092 0.4285 9.0575 20 7 0.9568 1.4835 9.6202 21 14 -1.0915 -0.3699 9.8321 22 1 -0.7791 -1.7798 10.1782 23 1 -1.4658 0.3704 11.0639 24 1 -2.2225 -0.3352 8.8704 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8901 28 1 1.8758 -1.7982 -1.2129 29 1 3.7639 0.6648 -1.3023 30 1 4.2151 -1.0914 -1.4152 31 1 3.0896 -1.3349 -3.5787 32 1 3.3969 0.4498 -3.7173 33 1 0.7965 -0.6300 -3.0772 34 1 1.3551 0.9901 -2.4733 35 1 1.8762 -2.6151 0.3646 36 1 1.9054 -2.5656 2.1439 37 1 0.4385 -2.0743 1.2639 38 1 1.9298 1.0869 2.3125 39 1 0.5723 -0.0346 2.5726 40 1 2.0979 -1.6142 3.7241 41 1 3.4554 -0.4927 3.4640 42 1 4.4807 -0.9272 6.0018 43 1 3.3749 -1.7794 7.1061 44 1 3.2344 -2.0168 5.3476 45 1 2.9844 0.5286 7.9778 46 1 1.9254 1.5898 7.0184 47 1 0.5808 1.8478 10.4367 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000325634090.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:30 Heat of formation + Delta-G solvation = -16.714510 kcal Electronic energy + Delta-G solvation = -22764.700924 eV Core-core repulsion = 19562.142014 eV Total energy + Delta-G solvation = -3202.558911 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.89952 -38.91564 -37.03082 -34.75883 -32.68229 -31.91150 -29.60243 -27.80859 -26.52528 -26.22779 -25.52804 -25.37766 -23.32044 -21.75423 -20.05044 -19.35858 -18.32298 -16.67954 -16.50382 -15.92896 -15.45996 -15.42301 -15.20853 -14.86412 -14.39342 -14.11908 -13.78493 -13.39644 -13.06860 -12.68157 -12.63281 -12.50354 -12.19358 -12.08022 -11.95435 -11.89514 -11.78456 -11.57386 -11.46209 -11.17921 -11.01887 -10.91556 -10.68463 -10.53950 -10.52671 -10.36552 -10.19589 -10.14146 -9.62232 -8.83912 -8.41814 -8.24820 -7.59833 -6.02601 -4.07385 3.32298 3.36600 3.38822 3.50907 3.69006 4.18232 4.42398 4.46941 4.51004 4.59829 4.76113 5.01183 5.04707 5.16740 5.25431 5.29608 5.30364 5.36311 5.41190 5.50637 5.52727 5.55925 5.58226 5.65834 5.67953 5.72367 5.79394 5.86613 5.92287 5.95706 5.98647 6.05606 6.13779 6.17364 6.25022 6.25692 6.36310 7.05844 7.09588 7.12652 7.47353 7.58012 7.93995 8.25840 8.47043 8.92272 9.14632 9.57590 11.05454 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031538 B = 0.003061 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.601162 B = 9146.100363 C = 9445.353747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.091 3.909 3 H 0.082 0.918 4 C -0.101 4.101 5 C -0.125 4.125 6 C -0.147 4.147 7 C -0.135 4.135 8 N -0.534 5.534 9 C 0.014 3.986 10 C 0.071 3.929 11 C -0.134 4.134 12 C 0.504 3.496 13 O -0.546 6.546 14 N -0.604 5.604 15 C 0.085 3.915 16 C 0.245 3.755 17 C -0.526 4.526 18 H 0.056 0.944 19 C 0.060 3.940 20 N -0.895 5.895 21 Si 0.898 3.102 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.277 1.277 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.029 0.971 38 H 0.079 0.921 39 H 0.044 0.956 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.044 0.956 43 H 0.072 0.928 44 H 0.057 0.943 45 H 0.031 0.969 46 H 0.043 0.957 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.982 -7.041 -22.159 23.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.017 4.017 3 H 0.100 0.900 4 C -0.120 4.120 5 C -0.162 4.162 6 C -0.184 4.184 7 C -0.173 4.173 8 N -0.257 5.257 9 C -0.134 4.134 10 C -0.057 4.057 11 C -0.175 4.175 12 C 0.290 3.710 13 O -0.424 6.424 14 N -0.336 5.336 15 C -0.060 4.060 16 C 0.125 3.875 17 C -0.565 4.565 18 H 0.074 0.926 19 C -0.141 4.141 20 N -0.534 5.534 21 Si 0.726 3.274 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.202 1.202 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.108 0.892 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.048 0.952 38 H 0.098 0.902 39 H 0.063 0.937 40 H 0.103 0.897 41 H 0.110 0.890 42 H 0.062 0.938 43 H 0.091 0.909 44 H 0.075 0.925 45 H 0.049 0.951 46 H 0.061 0.939 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.085 -6.434 -22.012 23.490 hybrid contribution -1.711 -0.541 0.690 1.922 sum 3.374 -6.975 -21.322 22.687 Atomic orbital electron populations 1.22462 0.97609 1.02208 1.02456 1.21723 0.92607 0.97989 0.89383 0.89997 1.22605 0.96594 0.99909 0.92845 1.22825 0.96429 1.01964 0.95021 1.22846 0.96965 1.01573 0.97019 1.22925 0.96836 1.01059 0.96525 1.62215 1.59266 1.02320 1.01939 1.22519 0.98182 0.90330 1.02417 1.21815 0.98260 0.98007 0.87619 1.21647 1.02422 1.00441 0.92975 1.20339 0.81319 0.84678 0.84643 1.90657 1.35014 1.30396 1.86367 1.48160 1.43952 1.32638 1.08868 1.21624 0.92191 0.89429 1.02714 1.19269 0.95445 0.93016 0.79727 1.21399 1.12874 1.13870 1.08320 0.92610 1.24941 0.97307 0.94985 0.96916 1.69925 1.40938 1.22501 1.20080 0.86561 0.83145 0.79211 0.78506 1.20265 1.21152 1.20213 0.92129 0.92396 0.92083 0.89189 0.90124 0.91601 0.90545 0.91721 0.91812 0.90142 0.91469 0.91290 0.95223 0.90222 0.93728 0.89696 0.88977 0.93753 0.90918 0.92452 0.95063 0.93882 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.95 8.30 37.16 0.31 -1.64 16 2 C 0.09 0.95 2.17 -67.71 -0.15 0.80 16 3 H 0.08 0.90 7.84 -51.93 -0.41 0.49 16 4 C -0.10 -0.87 3.05 -89.81 -0.27 -1.14 16 5 C -0.12 -1.04 7.63 -25.92 -0.20 -1.24 16 6 C -0.15 -1.06 8.08 -25.92 -0.21 -1.27 16 7 C -0.14 -1.02 6.68 -25.92 -0.17 -1.20 16 8 N -0.53 -6.25 4.75 -234.87 -1.12 -7.37 16 9 C 0.01 0.14 8.68 60.07 0.52 0.66 16 10 C 0.07 1.03 3.69 -3.82 -0.01 1.02 16 11 C -0.13 -2.03 4.18 -27.88 -0.12 -2.15 16 12 C 0.50 10.63 7.67 -10.98 -0.08 10.55 16 13 O -0.55 -13.93 15.56 5.56 0.09 -13.84 16 14 N -0.60 -13.09 2.86 -182.96 -0.52 -13.62 16 15 C 0.08 1.36 10.24 59.85 0.61 1.98 16 16 C 0.24 6.55 5.16 -5.19 -0.03 6.52 16 17 C -0.53 -15.18 9.39 -34.44 -0.32 -15.50 16 18 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 20 N -0.90 -26.98 13.29 55.43 0.74 -26.25 16 21 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 H 0.06 0.55 7.45 -51.93 -0.39 0.16 16 26 H 0.06 0.58 6.39 -51.93 -0.33 0.25 16 27 H 0.06 0.73 6.75 -51.93 -0.35 0.38 16 28 H 0.09 0.78 6.18 -51.93 -0.32 0.46 16 29 H 0.08 0.71 7.96 -51.93 -0.41 0.29 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 35 H 0.07 0.60 6.16 -51.93 -0.32 0.28 16 36 H 0.07 0.71 6.30 -51.93 -0.33 0.39 16 37 H 0.03 0.32 6.28 -51.93 -0.33 -0.01 16 38 H 0.08 1.24 7.96 -51.93 -0.41 0.83 16 39 H 0.04 0.72 6.89 -51.93 -0.36 0.36 16 40 H 0.08 1.16 5.73 -51.93 -0.30 0.86 16 41 H 0.09 1.25 8.11 -51.93 -0.42 0.83 16 42 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 44 H 0.06 0.76 6.44 -51.93 -0.33 0.42 16 45 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 46 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 47 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 362.62 15.07 5.46 5.46 Total: -1.00 -32.57 362.62 -8.90 -41.47 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -8.31 Total: -2.00 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -0.22 Total: -0.95 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: -0.90 Total: -47.23 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: 0.09 Total: -13.84 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.57 -8.90 -41.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000325634090.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.760 kcal (2) G-P(sol) polarization free energy of solvation -32.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds