Wall clock time and date at job start Tue Mar 31 2020 05:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47506 * 2 1 4 4 C 1.50700 * 109.47049 * 239.99925 * 2 1 3 5 5 H 1.08001 * 119.99635 * 245.46746 * 4 2 1 6 6 C 1.37874 * 120.00326 * 65.47182 * 4 2 1 7 7 N 1.31512 * 120.00059 * 9.71717 * 6 4 2 8 8 Si 1.86799 * 120.00111 * 189.71893 * 6 4 2 9 9 H 1.48498 * 109.47250 * 84.98929 * 8 6 4 10 10 H 1.48494 * 109.46993 * 204.99201 * 8 6 4 11 11 H 1.48500 * 109.47185 * 324.99143 * 8 6 4 12 12 N 1.46905 * 109.46778 * 119.99801 * 2 1 3 13 13 C 1.46897 * 111.00127 * 58.95934 * 12 2 1 14 14 C 1.46900 * 111.00036 * 294.99828 * 12 2 1 15 15 C 1.50697 * 109.46710 * 190.00279 * 14 12 2 16 16 O 1.21279 * 120.00426 * 359.97438 * 15 14 12 17 17 N 1.34783 * 119.99710 * 179.97438 * 15 14 12 18 18 C 1.46493 * 120.00150 * 179.97438 * 17 15 14 19 19 C 1.53000 * 109.47591 * 180.02562 * 18 17 15 20 20 C 1.53007 * 109.46936 * 295.00431 * 19 18 17 21 21 C 1.52993 * 109.47039 * 179.97438 * 20 19 18 22 22 C 1.52997 * 109.47464 * 59.99785 * 21 20 19 23 23 C 1.52995 * 109.47080 * 299.99829 * 22 21 20 24 24 C 1.52997 * 109.47729 * 175.00117 * 19 18 17 25 25 H 1.09004 * 109.47469 * 61.82229 * 1 2 3 26 26 H 1.09008 * 109.47464 * 181.81623 * 1 2 3 27 27 H 1.08996 * 109.47442 * 301.82017 * 1 2 3 28 28 H 0.96992 * 120.00364 * 180.02562 * 7 6 4 29 29 H 1.09004 * 109.46888 * 296.04531 * 13 12 2 30 30 H 1.09000 * 109.47642 * 56.03694 * 13 12 2 31 31 H 1.08996 * 109.47494 * 176.04696 * 13 12 2 32 32 H 1.08996 * 109.46882 * 70.00270 * 14 12 2 33 33 H 1.08998 * 109.46973 * 310.00222 * 14 12 2 34 34 H 0.97004 * 120.00021 * 0.02562 * 17 15 14 35 35 H 1.09001 * 109.47412 * 300.00478 * 18 17 15 36 36 H 1.09004 * 109.47194 * 60.00022 * 18 17 15 37 37 H 1.09002 * 109.46912 * 54.99637 * 19 18 17 38 38 H 1.09000 * 109.46718 * 299.99900 * 20 19 18 39 39 H 1.09001 * 109.46878 * 59.99133 * 20 19 18 40 40 H 1.09002 * 109.47073 * 299.99367 * 21 20 19 41 41 H 1.09009 * 109.47287 * 179.97438 * 21 20 19 42 42 H 1.09000 * 109.47671 * 179.97438 * 22 21 20 43 43 H 1.09002 * 109.47316 * 59.99731 * 22 21 20 44 44 H 1.08998 * 109.47679 * 300.00220 * 23 22 21 45 45 H 1.08998 * 109.47477 * 179.97438 * 23 22 21 46 46 H 1.08997 * 109.46784 * 299.99884 * 24 19 18 47 47 H 1.09000 * 109.46847 * 59.99536 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5784 -1.6371 -1.1337 6 6 1.7947 -0.1774 -2.4796 7 7 1.3026 1.0369 -2.5936 8 14 2.1719 -1.1798 -4.0100 9 1 1.0173 -2.0598 -4.3224 10 1 2.4199 -0.2643 -5.1526 11 1 3.3784 -2.0121 -3.7717 12 7 2.0195 -0.6925 1.1995 13 6 1.5283 -2.0761 1.2460 14 6 1.6486 0.0392 2.4181 15 6 2.3678 -0.5571 3.6005 16 8 3.1153 -1.4991 3.4437 17 7 2.1802 -0.0434 4.8325 18 6 2.8789 -0.6234 5.9820 19 6 2.4927 0.1387 7.2513 20 6 2.9985 1.5795 7.1548 21 6 2.6118 2.3418 8.4237 22 6 3.2419 1.6605 9.6401 23 6 2.7360 0.2198 9.7365 24 6 3.1232 -0.5428 8.4673 25 1 -0.3634 0.4853 -0.9059 26 1 -0.3634 -1.0272 0.0326 27 1 -0.3634 0.5418 0.8732 28 1 1.1351 1.4118 -3.4724 29 1 0.4419 -2.0731 1.3347 30 1 1.8166 -2.5950 0.3319 31 1 1.9616 -2.5868 2.1059 32 1 0.5721 -0.0344 2.5726 33 1 1.9296 1.0870 2.3125 34 1 1.5820 0.7098 4.9580 35 1 2.5971 -1.6710 6.0878 36 1 3.9555 -0.5506 5.8275 37 1 1.4079 0.1410 7.3578 38 1 4.0833 1.5773 7.0482 39 1 2.5493 2.0650 6.2884 40 1 1.5270 2.3440 8.5298 41 1 2.9726 3.3682 8.3552 42 1 2.9667 2.2038 10.5440 43 1 4.3267 1.6582 9.5339 44 1 1.6512 0.2219 9.8426 45 1 3.1852 -0.2658 10.6028 46 1 2.7627 -1.5692 8.5360 47 1 4.2080 -0.5450 8.3607 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330995800.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:06 Heat of formation + Delta-G solvation = -56.547992 kcal Electronic energy + Delta-G solvation = -22656.309076 eV Core-core repulsion = 19452.022856 eV Total energy + Delta-G solvation = -3204.286220 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.75990 -38.69741 -36.63947 -34.65330 -32.61127 -31.53509 -30.99851 -29.18404 -27.62423 -25.64014 -25.09460 -23.70708 -22.90532 -21.46782 -20.43001 -19.92205 -19.13745 -16.89294 -16.02958 -15.87122 -15.65080 -15.27329 -14.74451 -14.56739 -14.42231 -14.19969 -13.95296 -13.66770 -13.28743 -12.84353 -12.58512 -12.46857 -12.40144 -12.30648 -11.95881 -11.64224 -11.43192 -11.28963 -10.98335 -10.87942 -10.82968 -10.75806 -10.74685 -10.46598 -10.43459 -10.33331 -10.08289 -9.88973 -9.22514 -8.90919 -8.83225 -8.31419 -7.10177 -6.01120 -3.99527 3.07721 3.34691 3.35559 3.40891 3.45992 4.33151 4.41285 4.43450 4.46723 4.83768 4.93499 4.98187 5.13976 5.15190 5.18899 5.21403 5.28524 5.33702 5.34151 5.50992 5.62280 5.70570 5.75465 5.83747 5.84202 5.86774 5.89795 5.90879 5.97504 6.04401 6.18800 6.38639 6.45750 6.60236 6.67171 6.76237 7.01468 7.05445 7.40364 7.59773 7.71307 7.88910 8.12137 8.36525 8.58460 8.67840 9.06015 9.63556 11.09076 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.041128 B = 0.002814 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.630356 B = 9946.707772 C =10245.465786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.209 3.791 3 H 0.047 0.953 4 C -0.500 4.500 5 H 0.064 0.936 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.516 5.516 13 C 0.030 3.970 14 C 0.037 3.963 15 C 0.513 3.487 16 O -0.520 6.520 17 N -0.741 5.741 18 C 0.126 3.874 19 C -0.098 4.098 20 C -0.116 4.116 21 C -0.120 4.120 22 C -0.121 4.121 23 C -0.118 4.118 24 C -0.112 4.112 25 H 0.071 0.929 26 H 0.034 0.966 27 H 0.011 0.989 28 H 0.260 0.740 29 H 0.009 0.991 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.094 0.906 34 H 0.396 0.604 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.064 0.936 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.370 1.993 23.795 23.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.103 3.897 3 H 0.064 0.936 4 C -0.538 4.538 5 H 0.083 0.917 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.198 1.198 12 N -0.240 5.240 13 C -0.119 4.119 14 C -0.095 4.095 15 C 0.300 3.700 16 O -0.394 6.394 17 N -0.396 5.396 18 C 0.002 3.998 19 C -0.117 4.117 20 C -0.154 4.154 21 C -0.157 4.157 22 C -0.158 4.158 23 C -0.156 4.156 24 C -0.150 4.150 25 H 0.090 0.910 26 H 0.053 0.947 27 H 0.030 0.970 28 H 0.070 0.930 29 H 0.027 0.973 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.113 0.887 34 H 0.230 0.770 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.083 0.917 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.667 1.403 23.484 23.535 hybrid contribution -1.124 0.028 -0.782 1.369 sum -0.457 1.431 22.702 22.752 Atomic orbital electron populations 1.22383 1.01304 0.99094 0.99948 1.19392 0.89210 0.95143 0.85975 0.93555 1.21086 1.34892 1.08248 0.89617 0.91748 1.24911 0.95501 0.94707 0.98963 1.69960 1.45694 1.13925 1.23734 0.86582 0.78738 0.80060 0.82497 1.20714 1.21402 1.19841 1.62095 1.59485 1.02001 1.00397 1.22384 0.95866 0.90900 1.02714 1.21935 0.97248 0.99591 0.90762 1.21044 0.81980 0.83348 0.83675 1.90642 1.36521 1.27446 1.84805 1.46092 1.49272 1.36985 1.07224 1.21299 0.97249 0.97070 0.84185 1.21405 1.00863 0.95314 0.94085 1.21616 1.01495 0.94587 0.97674 1.21537 1.00659 0.98895 0.94640 1.21548 1.00537 0.95795 0.97955 1.21525 1.01031 0.95567 0.97454 1.21512 1.00971 0.98918 0.93618 0.91028 0.94700 0.97023 0.93022 0.97297 0.90790 0.92018 0.92979 0.88742 0.76967 0.91902 0.91729 0.90624 0.91649 0.91705 0.92024 0.92000 0.92245 0.91997 0.92014 0.92026 0.91692 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.94 8.36 37.15 0.31 -3.63 16 2 C 0.21 5.29 2.21 -68.86 -0.15 5.14 16 3 H 0.05 1.28 7.98 -51.93 -0.41 0.87 16 4 C -0.50 -13.98 7.93 -34.44 -0.27 -14.25 16 5 H 0.06 1.83 6.57 -52.49 -0.35 1.49 16 6 C 0.06 1.69 5.18 -17.82 -0.09 1.60 16 7 N -0.89 -25.72 12.17 55.43 0.67 -25.05 16 8 Si 0.89 21.69 29.55 -169.99 -5.02 16.67 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 12 N -0.52 -11.71 4.48 -237.74 -1.06 -12.77 16 13 C 0.03 0.64 8.45 60.06 0.51 1.15 16 14 C 0.04 0.66 4.89 -4.98 -0.02 0.63 16 15 C 0.51 8.73 7.55 -10.98 -0.08 8.65 16 16 O -0.52 -10.90 14.31 5.56 0.08 -10.82 16 17 N -0.74 -9.07 5.28 -60.30 -0.32 -9.39 16 18 C 0.13 1.37 5.06 -4.05 -0.02 1.35 16 19 C -0.10 -0.77 2.22 -90.62 -0.20 -0.97 16 20 C -0.12 -0.89 5.08 -26.73 -0.14 -1.02 16 21 C -0.12 -0.80 5.92 -26.74 -0.16 -0.96 16 22 C -0.12 -0.76 5.92 -26.74 -0.16 -0.92 16 23 C -0.12 -0.74 5.92 -26.71 -0.16 -0.90 16 24 C -0.11 -0.80 5.21 -26.71 -0.14 -0.94 16 25 H 0.07 1.84 6.88 -51.93 -0.36 1.49 16 26 H 0.03 0.79 6.38 -51.92 -0.33 0.46 16 27 H 0.01 0.23 6.84 -51.93 -0.36 -0.13 16 28 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.01 0.18 6.47 -51.93 -0.34 -0.16 16 30 H 0.07 1.70 6.31 -51.93 -0.33 1.37 16 31 H 0.06 1.31 5.88 -51.93 -0.31 1.00 16 32 H 0.05 0.87 6.98 -51.93 -0.36 0.51 16 33 H 0.09 1.60 8.00 -51.93 -0.42 1.19 16 34 H 0.40 3.79 7.66 -40.82 -0.31 3.48 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.50 7.18 -51.93 -0.37 0.13 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 42 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 356.16 15.07 5.37 5.37 Total: -1.00 -31.37 356.16 -9.51 -40.88 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -8.44 Total: 0.19 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -0.78 Total: -5.07 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: -0.71 Total: -47.21 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.08 Total: -10.82 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.37 -9.51 -40.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330995800.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.673 kcal (2) G-P(sol) polarization free energy of solvation -31.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds