Wall clock time and date at job start Tue Mar 31 2020 05:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 H 1.08004 * 119.99528 * 119.99911 * 4 2 1 6 6 C 1.37876 * 120.00356 * 300.00710 * 4 2 1 7 7 N 1.31518 * 119.99554 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00086 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47385 * 59.99525 * 8 6 4 10 10 H 1.48500 * 109.47279 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47348 * 299.99599 * 8 6 4 12 12 N 1.46899 * 109.47163 * 240.00322 * 2 1 3 13 13 C 1.46893 * 111.00189 * 306.04680 * 12 2 1 14 14 C 1.46903 * 110.99939 * 69.99849 * 12 2 1 15 15 C 1.50701 * 109.47044 * 169.99655 * 14 12 2 16 16 O 1.21276 * 120.00000 * 0.02562 * 15 14 12 17 17 N 1.34774 * 119.99764 * 179.97438 * 15 14 12 18 18 C 1.46505 * 119.99733 * 180.02562 * 17 15 14 19 19 C 1.53004 * 109.47050 * 180.02562 * 18 17 15 20 20 C 1.53003 * 109.46837 * 294.99631 * 19 18 17 21 21 C 1.53004 * 109.46837 * 179.97438 * 20 19 18 22 22 C 1.52999 * 109.46821 * 60.00048 * 21 20 19 23 23 C 1.52993 * 109.47289 * 299.99644 * 22 21 20 24 24 C 1.52999 * 109.46821 * 174.99679 * 19 18 17 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 28 28 H 0.97005 * 119.99198 * 180.02562 * 7 6 4 29 29 H 1.08997 * 109.47231 * 60.00105 * 13 12 2 30 30 H 1.09001 * 109.47433 * 179.97438 * 13 12 2 31 31 H 1.09003 * 109.47029 * 299.99707 * 13 12 2 32 32 H 1.08999 * 109.47506 * 289.99793 * 14 12 2 33 33 H 1.09002 * 109.47089 * 50.00220 * 14 12 2 34 34 H 0.96996 * 120.00560 * 0.02562 * 17 15 14 35 35 H 1.09006 * 109.47052 * 299.99472 * 18 17 15 36 36 H 1.08998 * 109.47424 * 59.99833 * 18 17 15 37 37 H 1.09001 * 109.47400 * 54.99755 * 19 18 17 38 38 H 1.08998 * 109.46733 * 300.00102 * 20 19 18 39 39 H 1.08998 * 109.46930 * 60.00191 * 20 19 18 40 40 H 1.08993 * 109.46788 * 300.00058 * 21 20 19 41 41 H 1.08995 * 109.46779 * 180.02562 * 21 20 19 42 42 H 1.08998 * 109.46852 * 179.97438 * 22 21 20 43 43 H 1.09002 * 109.47462 * 60.00238 * 22 21 20 44 44 H 1.09001 * 109.47253 * 300.00120 * 23 22 21 45 45 H 1.09003 * 109.47283 * 180.02562 * 23 22 21 46 46 H 1.08995 * 109.47442 * 299.99592 * 24 19 18 47 47 H 1.09002 * 109.47462 * 60.00238 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9434 0.8300 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 3.8064 -1.1211 4.0081 10 1 1.8269 -0.4202 5.2204 11 1 1.8259 -2.5204 4.0076 12 7 2.0197 -0.6924 -1.1995 13 6 1.4344 -2.0353 -1.3080 14 6 1.7529 0.0974 -2.4090 15 6 2.4775 -0.5160 -3.5794 16 8 3.1495 -1.5131 -3.4216 17 7 2.3778 0.0430 -4.8017 18 6 3.0818 -0.5537 -5.9396 19 6 2.8040 0.2690 -7.1994 20 6 1.3175 0.1782 -7.5503 21 6 1.0397 1.0014 -8.8098 22 6 1.8722 0.4539 -9.9708 23 6 3.3586 0.5447 -9.6199 24 6 3.6365 -0.2791 -8.3602 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 0.7094 1.1615 3.4845 29 1 0.3492 -1.9548 -1.3695 30 1 1.8134 -2.5256 -2.2047 31 1 1.7061 -2.6220 -0.4304 32 1 0.6815 0.1054 -2.6088 33 1 2.1025 1.1190 -2.2603 34 1 1.8401 0.8403 -4.9281 35 1 4.1535 -0.5616 -5.7403 36 1 2.7322 -1.5754 -6.0880 37 1 3.0721 1.3102 -7.0200 38 1 1.0496 -0.8630 -7.7298 39 1 0.7245 0.5687 -6.7233 40 1 1.3076 2.0424 -8.6297 41 1 -0.0193 0.9371 -9.0594 42 1 1.6739 1.0400 -10.8681 43 1 1.6043 -0.5873 -10.1508 44 1 3.6265 1.5858 -9.4400 45 1 3.9517 0.1550 -10.4473 46 1 4.6954 -0.2144 -8.1103 47 1 3.3685 -1.3203 -8.5398 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330995801.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:08 Heat of formation + Delta-G solvation = -55.196259 kcal Electronic energy + Delta-G solvation = -22667.869319 eV Core-core repulsion = 19463.641715 eV Total energy + Delta-G solvation = -3204.227604 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.76421 -38.70149 -36.62778 -34.65653 -32.64690 -31.53999 -31.00737 -29.11966 -27.53016 -25.61478 -25.18919 -23.67333 -22.91386 -21.46864 -20.42071 -19.91652 -19.11653 -16.90427 -15.99312 -15.88395 -15.65697 -15.24403 -14.80981 -14.55943 -14.42054 -14.17954 -14.00851 -13.63013 -13.32442 -12.77389 -12.57260 -12.51199 -12.45601 -12.28876 -11.96444 -11.51858 -11.44145 -11.29540 -10.98363 -10.89137 -10.77253 -10.75026 -10.65115 -10.44800 -10.43386 -10.34121 -10.03797 -9.93746 -9.23963 -8.88117 -8.81241 -8.34447 -7.08403 -5.97614 -4.00131 3.07572 3.35106 3.37285 3.40345 3.45422 4.32399 4.40623 4.42683 4.46671 4.83070 4.92820 4.97671 5.14307 5.15036 5.18615 5.20440 5.28654 5.33000 5.34928 5.49911 5.61787 5.70180 5.74649 5.82957 5.83646 5.86786 5.89290 5.90558 5.96283 6.03837 6.17785 6.39071 6.47445 6.61709 6.72370 6.83980 7.02991 7.11801 7.43583 7.70917 7.73859 7.89808 8.15238 8.40823 8.58564 8.67595 9.06251 9.64556 11.09818 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.043433 B = 0.002802 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.513329 B = 9989.126171 C =10281.959426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.211 3.789 3 H 0.039 0.961 4 C -0.495 4.495 5 H 0.063 0.937 6 C 0.057 3.943 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.517 5.517 13 C 0.032 3.968 14 C 0.037 3.963 15 C 0.513 3.487 16 O -0.520 6.520 17 N -0.741 5.741 18 C 0.126 3.874 19 C -0.098 4.098 20 C -0.116 4.116 21 C -0.120 4.120 22 C -0.121 4.121 23 C -0.118 4.118 24 C -0.112 4.112 25 H 0.033 0.967 26 H 0.089 0.911 27 H 0.005 0.995 28 H 0.260 0.740 29 H 0.012 0.988 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.094 0.906 34 H 0.396 0.604 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.090 1.914 -23.954 24.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.105 3.895 3 H 0.056 0.944 4 C -0.534 4.534 5 H 0.081 0.919 6 C -0.144 4.144 7 N -0.537 5.537 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.215 1.215 11 H -0.204 1.204 12 N -0.241 5.241 13 C -0.117 4.117 14 C -0.095 4.095 15 C 0.300 3.700 16 O -0.394 6.394 17 N -0.396 5.396 18 C 0.002 3.998 19 C -0.117 4.117 20 C -0.153 4.153 21 C -0.157 4.157 22 C -0.158 4.158 23 C -0.156 4.156 24 C -0.150 4.150 25 H 0.052 0.948 26 H 0.108 0.892 27 H 0.024 0.976 28 H 0.070 0.930 29 H 0.030 0.970 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.112 0.888 34 H 0.230 0.770 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.851 1.224 -23.617 23.664 hybrid contribution -0.929 0.155 0.710 1.179 sum -0.078 1.379 -22.908 22.949 Atomic orbital electron populations 1.22428 1.00828 0.99569 1.00423 1.19369 0.89743 0.94451 0.85961 0.94365 1.21073 1.30349 1.12490 0.89480 0.91873 1.24919 0.95285 0.95186 0.98983 1.69877 1.37260 1.23137 1.23455 0.86553 0.79272 0.79597 0.81938 1.20214 1.21454 1.20357 1.62090 1.59090 1.02325 1.00589 1.22350 0.95495 0.91548 1.02280 1.21925 0.97647 0.99011 0.90948 1.21037 0.81300 0.84216 0.83485 1.90643 1.39671 1.24981 1.84119 1.46092 1.53014 1.32070 1.08393 1.21301 0.97153 0.96884 0.84458 1.21409 0.95940 1.00224 0.94123 1.21613 0.95419 1.00746 0.97549 1.21536 0.99598 0.99608 0.94999 1.21546 0.95165 1.01246 0.97861 1.21528 0.96263 1.00381 0.97422 1.21512 0.99628 0.99797 0.94074 0.94795 0.89221 0.97609 0.93013 0.96974 0.92160 0.91090 0.93011 0.88765 0.76962 0.91751 0.91873 0.90526 0.91738 0.91779 0.91979 0.92045 0.92237 0.92033 0.91974 0.92014 0.91623 0.91640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.17 8.22 37.16 0.31 -3.86 16 2 C 0.21 5.37 2.31 -68.86 -0.16 5.21 16 3 H 0.04 1.05 7.93 -51.93 -0.41 0.64 16 4 C -0.50 -13.91 7.97 -34.44 -0.27 -14.18 16 5 H 0.06 1.81 7.10 -52.48 -0.37 1.44 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 7 N -0.90 -25.65 11.32 55.43 0.63 -25.02 16 8 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 N -0.52 -11.78 4.44 -237.73 -1.06 -12.83 16 13 C 0.03 0.69 8.46 60.06 0.51 1.19 16 14 C 0.04 0.66 5.02 -4.97 -0.02 0.64 16 15 C 0.51 8.75 7.52 -10.99 -0.08 8.66 16 16 O -0.52 -10.91 14.33 5.56 0.08 -10.83 16 17 N -0.74 -9.08 5.28 -60.29 -0.32 -9.40 16 18 C 0.13 1.37 5.06 -4.04 -0.02 1.35 16 19 C -0.10 -0.77 2.22 -90.62 -0.20 -0.97 16 20 C -0.12 -0.87 5.08 -26.73 -0.14 -1.00 16 21 C -0.12 -0.78 5.92 -26.73 -0.16 -0.94 16 22 C -0.12 -0.75 5.92 -26.74 -0.16 -0.91 16 23 C -0.12 -0.74 5.92 -26.70 -0.16 -0.90 16 24 C -0.11 -0.80 5.21 -26.70 -0.14 -0.94 16 25 H 0.03 0.80 6.33 -51.93 -0.33 0.47 16 26 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 27 H 0.00 0.11 6.91 -51.93 -0.36 -0.25 16 28 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.01 0.25 6.21 -51.93 -0.32 -0.07 16 30 H 0.06 1.27 5.82 -51.93 -0.30 0.97 16 31 H 0.07 1.64 6.86 -51.93 -0.36 1.28 16 32 H 0.05 0.87 7.06 -51.93 -0.37 0.51 16 33 H 0.09 1.60 7.93 -51.93 -0.41 1.19 16 34 H 0.40 3.80 7.65 -40.82 -0.31 3.49 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.48 7.18 -51.93 -0.37 0.11 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 355.44 15.07 5.36 5.36 Total: -1.00 -31.26 355.44 -9.56 -40.83 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -8.44 Total: 0.28 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -0.79 Total: -5.16 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: -0.75 Total: -47.25 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.08 Total: -10.83 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.26 -9.56 -40.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330995801.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.371 kcal (2) G-P(sol) polarization free energy of solvation -31.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds