Wall clock time and date at job start Tue Mar 31 2020 06:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.46726 * 2 1 4 4 C 1.46498 * 119.99913 * 269.99548 * 3 2 1 5 5 C 1.53001 * 109.47430 * 277.74159 * 4 3 2 6 6 C 1.34776 * 119.99987 * 90.00320 * 3 2 1 7 7 O 1.21278 * 120.00330 * 5.79646 * 6 3 2 8 8 C 1.50710 * 119.99944 * 185.79926 * 6 3 2 9 9 N 1.46901 * 109.46814 * 303.30868 * 8 6 3 10 10 C 1.46902 * 111.00367 * 295.94338 * 9 8 6 11 11 C 1.50701 * 109.47193 * 184.22031 * 10 9 8 12 12 H 1.07995 * 119.99836 * 5.00136 * 11 10 9 13 13 C 1.37881 * 119.99738 * 184.99369 * 11 10 9 14 14 N 1.31515 * 119.99746 * 184.99695 * 13 11 10 15 15 Si 1.86794 * 120.00004 * 4.99773 * 13 11 10 16 16 H 1.48505 * 109.47385 * 94.93753 * 15 13 11 17 17 H 1.48503 * 109.47121 * 214.93812 * 15 13 11 18 18 H 1.48503 * 109.47481 * 334.93958 * 15 13 11 19 19 C 1.52999 * 109.47056 * 183.31217 * 8 6 3 20 20 C 1.53002 * 109.46932 * 299.99938 * 19 8 6 21 21 C 1.53000 * 109.46797 * 300.00032 * 20 19 8 22 22 C 1.52999 * 109.47405 * 60.00258 * 21 20 19 23 23 C 1.52998 * 109.47218 * 299.99879 * 22 21 20 24 24 H 1.08992 * 109.46988 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47436 * 300.00134 * 1 2 3 26 26 H 1.09002 * 109.46675 * 60.00187 * 1 2 3 27 27 H 1.09000 * 109.47081 * 240.00275 * 2 1 3 28 28 H 1.08997 * 109.47346 * 119.99578 * 2 1 3 29 29 H 1.08997 * 109.47125 * 37.74174 * 4 3 2 30 30 H 1.09005 * 109.47369 * 157.74568 * 4 3 2 31 31 H 1.08996 * 109.47193 * 64.69553 * 5 4 3 32 32 H 1.08998 * 109.47427 * 184.70106 * 5 4 3 33 33 H 1.09005 * 109.46998 * 304.70096 * 5 4 3 34 34 H 1.00898 * 111.00179 * 171.98668 * 9 8 6 35 35 H 1.08992 * 109.47128 * 304.22514 * 10 9 8 36 36 H 1.09001 * 109.46989 * 64.22177 * 10 9 8 37 37 H 0.96998 * 119.99921 * 180.02562 * 14 13 11 38 38 H 1.09000 * 109.46619 * 179.97438 * 19 8 6 39 39 H 1.08997 * 109.46933 * 60.00025 * 19 8 6 40 40 H 1.09007 * 109.46845 * 180.02562 * 20 19 8 41 41 H 1.08996 * 109.47212 * 59.99820 * 20 19 8 42 42 H 1.09004 * 109.46874 * 180.02562 * 21 20 19 43 43 H 1.08999 * 109.47548 * 299.99960 * 21 20 19 44 44 H 1.09000 * 109.46619 * 59.99741 * 22 21 20 45 45 H 1.08996 * 109.47335 * 179.97438 * 22 21 20 46 46 H 1.08996 * 109.47615 * 179.97438 * 23 22 21 47 47 H 1.09005 * 109.46906 * 300.00372 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6390 1.6773 -1.8075 6 6 2.2429 2.0166 1.1672 7 8 2.1424 1.4139 2.2148 8 6 2.6189 3.4760 1.1705 9 7 3.8237 3.6731 0.3535 10 6 4.9756 2.9721 0.9363 11 6 6.2115 3.2808 0.1312 12 1 6.1646 3.9949 -0.6776 13 6 7.4022 2.6517 0.4273 14 7 8.5017 2.9921 -0.2090 15 14 7.4535 1.3161 1.7322 16 1 7.3193 -0.0137 1.0850 17 1 8.7462 1.3843 2.4598 18 1 6.3357 1.5158 2.6892 19 6 2.8965 3.9279 2.6057 20 6 1.6416 3.7225 3.4567 21 6 0.4911 4.5470 2.8759 22 6 0.2135 4.0952 1.4407 23 6 1.4683 4.3004 0.5897 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.4954 1.7892 -1.9897 30 1 2.2306 3.1495 -1.1079 31 1 3.6444 0.6139 -2.0470 32 1 3.8560 2.2534 -2.7070 33 1 4.3975 1.8834 -1.0523 34 1 4.0216 4.6550 0.2320 35 1 5.1199 3.3028 1.9647 36 1 4.7921 1.8977 0.9225 37 1 9.3392 2.5492 -0.0009 38 1 3.1688 4.9833 2.6080 39 1 3.7162 3.3405 3.0193 40 1 1.8393 4.0449 4.4791 41 1 1.3697 2.6671 3.4542 42 1 -0.4028 4.4011 3.4824 43 1 0.7630 5.6025 2.8783 44 1 -0.0585 3.0396 1.4384 45 1 -0.6065 4.6822 1.0271 46 1 1.2707 3.9781 -0.4326 47 1 1.7403 5.3560 0.5922 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331350214.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:20 Heat of formation + Delta-G solvation = -32.916784 kcal Electronic energy + Delta-G solvation = -25269.658037 eV Core-core repulsion = 22066.396543 eV Total energy + Delta-G solvation = -3203.261494 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.77849 -37.39432 -35.89272 -34.75635 -32.50162 -31.63868 -30.59218 -29.56638 -28.73648 -26.22834 -24.09276 -23.33024 -22.56953 -21.70486 -20.84643 -20.11215 -18.13662 -17.17752 -16.28734 -15.99180 -15.31095 -14.89020 -14.59810 -14.21995 -14.00997 -13.87523 -13.46918 -13.29569 -13.08084 -12.69033 -12.64537 -12.41456 -12.36724 -12.20420 -11.99089 -11.80936 -11.60544 -11.57135 -11.10779 -10.89890 -10.86780 -10.76827 -10.56687 -10.49315 -10.13751 -10.02146 -9.89695 -9.76051 -9.37579 -8.99649 -8.59090 -8.24688 -7.57779 -6.11267 -4.08736 3.06241 3.27969 3.36335 3.42095 3.43870 4.40236 4.66668 4.73765 4.93440 5.01343 5.21501 5.22696 5.30561 5.35054 5.40735 5.45944 5.50860 5.55177 5.66932 5.71861 5.73670 5.80963 5.89842 5.92493 6.00646 6.06259 6.15761 6.22447 6.23465 6.27460 6.32157 6.42677 6.46902 6.55494 6.58889 6.74543 6.79342 7.01349 7.05519 7.35134 7.52729 7.70151 7.85236 8.16628 8.53400 8.67054 8.95701 9.51685 11.01248 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016143 B = 0.007332 C = 0.006338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.105808 B = 3817.810961 C = 4416.650619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.107 3.893 3 N -0.601 5.601 4 C 0.107 3.893 5 C -0.172 4.172 6 C 0.544 3.456 7 O -0.549 6.549 8 C 0.095 3.905 9 N -0.662 5.662 10 C 0.161 3.839 11 C -0.515 4.515 12 H 0.081 0.919 13 C 0.074 3.926 14 N -0.896 5.896 15 Si 0.868 3.132 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.265 1.265 19 C -0.130 4.130 20 C -0.132 4.132 21 C -0.117 4.117 22 C -0.118 4.118 23 C -0.116 4.116 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.050 0.950 30 H 0.109 0.891 31 H 0.031 0.969 32 H 0.056 0.944 33 H 0.105 0.895 34 H 0.343 0.657 35 H -0.007 1.007 36 H 0.022 0.978 37 H 0.264 0.736 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.051 0.949 41 H 0.093 0.907 42 H 0.055 0.945 43 H 0.057 0.943 44 H 0.059 0.941 45 H 0.061 0.939 46 H 0.083 0.917 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.284 0.151 0.081 17.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.016 4.016 3 N -0.333 5.333 4 C -0.015 4.015 5 C -0.230 4.230 6 C 0.333 3.667 7 O -0.427 6.427 8 C 0.000 4.000 9 N -0.293 5.293 10 C 0.034 3.966 11 C -0.553 4.553 12 H 0.099 0.901 13 C -0.128 4.128 14 N -0.534 5.534 15 Si 0.695 3.305 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.189 1.189 19 C -0.169 4.169 20 C -0.170 4.170 21 C -0.154 4.154 22 C -0.156 4.156 23 C -0.154 4.154 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.068 0.932 30 H 0.127 0.873 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.123 0.877 34 H 0.162 0.838 35 H 0.011 0.989 36 H 0.040 0.960 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.070 0.930 41 H 0.111 0.889 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.101 0.899 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.274 -0.735 0.156 17.291 hybrid contribution 0.518 -0.281 1.288 1.417 sum -16.756 -1.015 1.444 16.849 Atomic orbital electron populations 1.22109 0.96426 1.01640 1.01933 1.21334 0.93713 0.83668 1.02917 1.47895 1.65278 1.13347 1.06823 1.21900 0.96720 0.99517 0.83383 1.22287 0.98699 0.98946 1.03066 1.20347 0.74925 0.88630 0.82821 1.90541 1.52932 1.67709 1.31492 1.21104 0.93593 0.91800 0.93473 1.61013 1.03193 1.17478 1.47648 1.20109 0.88585 0.94026 0.93906 1.20953 0.91133 1.25860 1.17395 0.90131 1.24831 0.95497 0.96686 0.95797 1.69894 0.99269 1.42027 1.42241 0.86960 0.77784 0.83001 0.82738 1.20260 1.21162 1.18944 1.22012 0.98941 1.00843 0.95113 1.21816 0.94463 1.02812 0.97866 1.21533 0.98472 0.99606 0.95804 1.21525 0.97129 1.01363 0.95600 1.21884 0.93664 1.00093 0.99733 0.92082 0.92585 0.92746 0.90916 0.90307 0.93170 0.87292 0.94994 0.92467 0.87682 0.83780 0.98922 0.95987 0.92634 0.91916 0.90789 0.92976 0.88870 0.92607 0.92438 0.92226 0.91981 0.89922 0.90948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 10.24 37.16 0.38 -1.48 16 2 C 0.11 1.50 6.19 -4.04 -0.02 1.47 16 3 N -0.60 -9.53 2.48 -173.68 -0.43 -9.96 16 4 C 0.11 1.54 5.13 -4.04 -0.02 1.52 16 5 C -0.17 -2.91 9.83 37.16 0.37 -2.54 16 6 C 0.54 9.79 3.96 -10.98 -0.04 9.75 16 7 O -0.55 -11.29 13.10 5.56 0.07 -11.21 16 8 C 0.10 1.56 0.32 -132.75 -0.04 1.52 16 9 N -0.66 -12.18 3.17 -102.39 -0.32 -12.50 16 10 C 0.16 3.74 2.59 -4.97 -0.01 3.72 16 11 C -0.52 -13.83 9.10 -34.44 -0.31 -14.15 16 12 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 13 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 14 N -0.90 -26.82 13.96 55.43 0.77 -26.05 16 15 Si 0.87 21.95 27.42 -169.99 -4.66 17.29 16 16 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 17 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 18 H -0.27 -6.71 6.65 56.52 0.38 -6.33 16 19 C -0.13 -2.20 4.03 -26.73 -0.11 -2.31 16 20 C -0.13 -2.00 5.63 -26.73 -0.15 -2.15 16 21 C -0.12 -1.44 5.92 -26.73 -0.16 -1.60 16 22 C -0.12 -1.43 5.70 -26.73 -0.15 -1.58 16 23 C -0.12 -1.50 4.60 -26.73 -0.12 -1.63 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.92 8.01 -51.93 -0.42 0.50 16 28 H 0.08 1.25 7.35 -51.93 -0.38 0.86 16 29 H 0.05 0.61 8.13 -51.93 -0.42 0.18 16 30 H 0.11 1.55 3.29 -51.93 -0.17 1.37 16 31 H 0.03 0.51 8.08 -51.93 -0.42 0.09 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.10 2.21 4.23 -51.93 -0.22 1.99 16 34 H 0.34 6.06 8.61 -39.29 -0.34 5.72 16 35 H -0.01 -0.17 5.62 -51.93 -0.29 -0.46 16 36 H 0.02 0.56 5.71 -51.93 -0.30 0.26 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.07 1.49 6.24 -51.93 -0.32 1.17 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.09 1.62 5.39 -51.93 -0.28 1.34 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.81 7.22 -51.93 -0.37 0.43 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.08 1.01 5.13 -51.93 -0.27 0.74 16 47 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 340.46 15.07 5.13 5.13 Total: -1.00 -30.15 340.46 -7.95 -38.11 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -8.01 Total: 6.64 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -0.50 Total: -7.44 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: 0.02 Total: -48.51 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.07 Total: -11.21 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.66 Total: 17.29 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.15 -7.95 -38.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331350214.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.188 kcal (2) G-P(sol) polarization free energy of solvation -30.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds