Wall clock time and date at job start Tue Mar 31 2020 05:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08988 * 109.47575 * 2 1 4 4 C 1.50703 * 109.46859 * 120.00146 * 2 1 3 5 5 O 1.21282 * 119.99666 * 95.22081 * 4 2 1 6 6 N 1.34774 * 120.00071 * 275.21491 * 4 2 1 7 7 C 1.46500 * 119.99972 * 0.02562 * 6 4 2 8 8 C 1.46504 * 119.99926 * 180.02562 * 6 4 2 9 9 C 1.50699 * 109.47100 * 90.00272 * 8 6 4 10 10 H 1.07998 * 119.99947 * 359.97438 * 9 8 6 11 11 C 1.37874 * 120.00100 * 179.97438 * 9 8 6 12 12 N 1.31522 * 119.99661 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00335 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.46654 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47144 * 119.99847 * 13 11 9 16 16 H 1.48498 * 109.47121 * 240.00194 * 13 11 9 17 17 N 1.46902 * 109.46955 * 239.99940 * 2 1 3 18 18 C 1.46853 * 110.99825 * 176.65271 * 17 2 1 19 19 C 1.53037 * 109.51991 * 174.16194 * 18 17 2 20 20 C 1.53114 * 109.28181 * 59.17822 * 19 18 17 21 21 C 1.53003 * 109.52411 * 62.24631 * 20 19 18 22 22 C 1.52997 * 109.52361 * 182.43918 * 20 19 18 23 23 C 1.53124 * 109.16142 * 302.34189 * 20 19 18 24 24 C 1.46843 * 111.00029 * 52.44026 * 17 2 1 25 25 H 1.09004 * 109.47087 * 60.00112 * 1 2 3 26 26 H 1.09002 * 109.47633 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47209 * 299.99779 * 1 2 3 28 28 H 1.08999 * 109.47346 * 89.99535 * 7 6 4 29 29 H 1.09003 * 109.47286 * 210.00313 * 7 6 4 30 30 H 1.08998 * 109.47075 * 329.99755 * 7 6 4 31 31 H 1.09003 * 109.46938 * 209.99928 * 8 6 4 32 32 H 1.08995 * 109.47065 * 329.99664 * 8 6 4 33 33 H 0.97001 * 119.99605 * 180.02562 * 12 11 9 34 34 H 1.09004 * 109.46238 * 54.14580 * 18 17 2 35 35 H 1.08998 * 109.45745 * 294.17381 * 18 17 2 36 36 H 1.09005 * 109.50370 * 179.12041 * 19 18 17 37 37 H 1.09002 * 109.50161 * 299.23422 * 19 18 17 38 38 H 1.09003 * 109.46720 * 60.00369 * 21 20 19 39 39 H 1.08997 * 109.46774 * 180.02562 * 21 20 19 40 40 H 1.08991 * 109.47218 * 300.00033 * 21 20 19 41 41 H 1.09001 * 109.47400 * 60.00317 * 22 20 19 42 42 H 1.09007 * 109.47287 * 179.97438 * 22 20 19 43 43 H 1.08996 * 109.47152 * 299.99654 * 22 20 19 44 44 H 1.09003 * 109.50304 * 297.71763 * 23 20 19 45 45 H 1.08999 * 109.53818 * 177.60945 * 23 20 19 46 46 H 1.09000 * 109.46232 * 305.85327 * 24 17 2 47 47 H 1.08999 * 109.46093 * 65.82478 * 24 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 6 2.0322 -0.7105 1.2305 5 8 2.3244 -1.8863 1.1750 6 7 2.1568 -0.0392 2.3925 7 6 1.8034 1.3809 2.4596 8 6 2.6456 -0.7298 3.5886 9 6 4.1470 -0.6184 3.6546 10 1 4.6835 -0.0867 2.8826 11 6 4.8358 -1.1951 4.7005 12 7 4.1825 -1.8429 5.6403 13 14 6.6970 -1.0576 4.7820 14 1 7.1879 -0.2859 3.6121 15 1 7.0875 -0.3613 6.0342 16 1 7.2950 -2.4167 4.7641 17 7 2.0196 -0.6925 -1.1995 18 6 3.4854 -0.6432 -1.2741 19 6 3.9664 -1.4945 -2.4513 20 6 3.3524 -0.9581 -3.7474 21 6 3.8304 0.4758 -3.9845 22 6 3.7811 -1.8420 -4.9203 23 6 1.8261 -0.9750 -3.6250 24 6 1.4071 -0.1387 -2.4137 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.7510 1.4813 2.7251 29 1 2.4171 1.8728 3.2143 30 1 1.9792 1.8453 1.4893 31 1 2.2080 -0.2729 4.4762 32 1 2.3609 -1.7809 3.5431 33 1 4.6670 -2.2484 6.3763 34 1 3.9095 -1.0313 -0.3480 35 1 3.8072 0.3884 -1.4165 36 1 5.0534 -1.4451 -2.5160 37 1 3.6568 -2.5290 -2.3028 38 1 4.9173 0.4876 -4.0659 39 1 3.3924 0.8569 -4.9070 40 1 3.5217 1.1045 -3.1494 41 1 3.4372 -2.8624 -4.7511 42 1 3.3431 -1.4597 -5.8424 43 1 4.8678 -1.8338 -5.0032 44 1 1.4828 -2.0014 -3.4949 45 1 1.3834 -0.5548 -4.5280 46 1 0.3218 -0.1605 -2.3154 47 1 1.7387 0.8905 -2.5508 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339259160.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:49 Heat of formation + Delta-G solvation = -37.499757 kcal Electronic energy + Delta-G solvation = -23977.461855 eV Core-core repulsion = 20774.001628 eV Total energy + Delta-G solvation = -3203.460227 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.12302 -38.58575 -35.48576 -34.65993 -32.62227 -31.24519 -30.66494 -27.81540 -27.41791 -27.20912 -25.83937 -24.35044 -22.76227 -22.35924 -20.95947 -18.34390 -18.22706 -16.59078 -16.42977 -16.08877 -15.06692 -14.95701 -14.68460 -14.48599 -14.28293 -14.03607 -13.74306 -13.50058 -13.02760 -12.63978 -12.43458 -12.24152 -12.13371 -12.05017 -11.90116 -11.75682 -11.69518 -11.50387 -11.34438 -11.25627 -11.13280 -11.02420 -10.84024 -10.57006 -10.51418 -10.14743 -10.13250 -10.03632 -9.57309 -8.72618 -8.42015 -7.96026 -7.57440 -6.02452 -4.07039 3.30326 3.37561 3.40487 3.48844 3.78487 4.22970 4.46589 4.66262 4.74979 4.78146 5.05144 5.20182 5.24197 5.27509 5.32102 5.35276 5.42434 5.47887 5.55612 5.60579 5.67368 5.67936 5.72999 5.78305 5.80419 5.84328 5.91866 5.96767 5.98895 6.04569 6.09886 6.17472 6.22277 6.30932 6.32371 6.42936 6.50424 7.03802 7.25711 7.33223 7.48758 7.59863 7.94668 8.26122 8.48837 8.93687 9.20237 9.58280 11.05597 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018693 B = 0.004864 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.494158 B = 5754.745827 C = 6687.260674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.063 3.937 3 H 0.055 0.945 4 C 0.510 3.490 5 O -0.520 6.520 6 N -0.605 5.605 7 C 0.083 3.917 8 C 0.246 3.754 9 C -0.523 4.523 10 H 0.056 0.944 11 C 0.061 3.939 12 N -0.895 5.895 13 Si 0.897 3.103 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.282 1.282 17 N -0.512 5.512 18 C 0.054 3.946 19 C -0.101 4.101 20 C -0.069 4.069 21 C -0.144 4.144 22 C -0.139 4.139 23 C -0.103 4.103 24 C 0.051 3.949 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.044 0.956 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.031 0.969 32 H 0.043 0.957 33 H 0.262 0.738 34 H 0.087 0.913 35 H 0.028 0.972 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.053 0.947 39 H 0.051 0.949 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.051 0.949 43 H 0.053 0.947 44 H 0.071 0.929 45 H 0.062 0.938 46 H 0.078 0.922 47 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.701 7.054 -18.008 20.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.049 4.049 3 H 0.073 0.927 4 C 0.295 3.705 5 O -0.395 6.395 6 N -0.338 5.338 7 C -0.062 4.062 8 C 0.127 3.873 9 C -0.562 4.562 10 H 0.074 0.926 11 C -0.141 4.141 12 N -0.534 5.534 13 Si 0.725 3.275 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.209 1.209 17 N -0.238 5.238 18 C -0.074 4.074 19 C -0.139 4.139 20 C -0.069 4.069 21 C -0.201 4.201 22 C -0.196 4.196 23 C -0.141 4.141 24 C -0.077 4.077 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.105 0.895 35 H 0.046 0.954 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.090 0.910 45 H 0.081 0.919 46 H 0.096 0.904 47 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -5.649 5.823 -17.804 19.565 hybrid contribution 1.343 1.068 0.193 1.727 sum -4.306 6.891 -17.612 19.396 Atomic orbital electron populations 1.21807 0.92663 1.03417 1.01939 1.21671 0.96791 0.95825 0.90598 0.92733 1.20056 0.79040 0.87558 0.83882 1.90668 1.48991 1.15788 1.84100 1.48175 1.64192 1.09835 1.11625 1.21675 0.99552 0.83173 1.01777 1.19266 0.94113 0.93643 0.80279 1.21457 0.91945 1.34643 1.08198 0.92569 1.24932 0.98629 0.95013 0.95523 1.69948 1.35626 1.35652 1.12151 0.86463 0.85432 0.77904 0.77748 1.19865 1.20984 1.20851 1.61603 1.06725 1.55120 1.00346 1.22159 0.87093 0.97876 1.00230 1.21598 0.99287 1.00417 0.92605 1.20613 0.95499 0.95317 0.95445 1.21962 1.00878 0.96068 1.01195 1.21834 1.00989 0.99553 0.97221 1.21622 0.94714 1.01155 0.96559 1.22220 0.99634 0.95971 0.89876 0.91838 0.91104 0.91701 0.93786 0.90861 0.92645 0.95116 0.93850 0.92803 0.89501 0.95363 0.91807 0.90805 0.92826 0.93010 0.92505 0.92552 0.93001 0.92829 0.90983 0.91904 0.90384 0.95079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 8.67 37.15 0.32 -1.51 16 2 C 0.06 1.00 1.80 -68.86 -0.12 0.88 16 3 H 0.06 0.80 6.07 -51.94 -0.32 0.49 16 4 C 0.51 10.87 5.88 -10.99 -0.06 10.81 16 5 O -0.52 -13.47 15.24 5.56 0.08 -13.39 16 6 N -0.60 -13.07 2.86 -182.95 -0.52 -13.59 16 7 C 0.08 1.34 9.89 59.85 0.59 1.93 16 8 C 0.25 6.54 5.16 -5.19 -0.03 6.51 16 9 C -0.52 -14.99 9.39 -34.44 -0.32 -15.31 16 10 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 11 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 12 N -0.89 -26.84 13.29 55.43 0.74 -26.10 16 13 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 14 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 17 N -0.51 -7.94 4.21 -228.08 -0.96 -8.90 16 18 C 0.05 0.86 4.93 -3.83 -0.02 0.84 16 19 C -0.10 -1.38 4.88 -26.65 -0.13 -1.51 16 20 C -0.07 -0.75 0.77 -154.39 -0.12 -0.87 16 21 C -0.14 -1.44 7.90 37.16 0.29 -1.15 16 22 C -0.14 -1.31 8.49 37.16 0.32 -1.00 16 23 C -0.10 -1.11 4.88 -26.64 -0.13 -1.24 16 24 C 0.05 0.60 4.80 -3.83 -0.02 0.58 16 25 H 0.06 0.66 6.19 -51.93 -0.32 0.34 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.06 0.79 7.63 -51.93 -0.40 0.39 16 28 H 0.04 0.61 7.99 -51.93 -0.41 0.19 16 29 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 30 H 0.05 0.76 5.86 -51.93 -0.30 0.45 16 31 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 32 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.09 1.75 6.43 -51.93 -0.33 1.42 16 35 H 0.03 0.42 6.51 -51.93 -0.34 0.09 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.62 4.92 -51.93 -0.26 0.36 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.08 0.85 5.85 -51.93 -0.30 0.54 16 47 H 0.03 0.35 6.51 -51.93 -0.34 0.01 16 LS Contribution 354.42 15.07 5.34 5.34 Total: -1.00 -32.72 354.42 -8.19 -40.91 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -8.32 Total: -1.93 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: 0.47 Total: 0.63 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: -0.75 Total: -48.59 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.08 Total: -13.39 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.72 -8.19 -40.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339259160.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.412 kcal (2) G-P(sol) polarization free energy of solvation -32.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds