Wall clock time and date at job start Tue Mar 31 2020 05:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47462 * 2 1 4 4 C 1.53004 * 109.46879 * 240.00142 * 2 1 3 5 5 C 1.50697 * 109.47085 * 175.00033 * 4 2 1 6 6 O 1.21279 * 120.00141 * 0.02562 * 5 4 2 7 7 N 1.34783 * 119.99952 * 179.97438 * 5 4 2 8 8 C 1.44581 * 118.64175 * 359.73628 * 7 5 4 9 9 C 1.54304 * 109.90918 * 270.85311 * 8 7 5 10 10 C 1.47100 * 110.29170 * 288.75714 * 9 8 7 11 11 C 1.52565 * 114.32574 * 62.73620 * 10 9 8 12 12 C 1.50876 * 109.35392 * 274.97794 * 11 10 9 13 13 C 1.47607 * 118.64487 * 180.02562 * 7 5 4 14 14 N 1.46903 * 109.47458 * 120.00511 * 2 1 3 15 15 C 1.46898 * 110.99673 * 274.99797 * 14 2 1 16 16 C 1.53006 * 109.47006 * 179.97438 * 15 14 2 17 17 C 1.50698 * 109.47184 * 179.97438 * 16 15 14 18 18 H 1.08005 * 119.99819 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00046 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99933 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99912 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47017 * 89.99937 * 21 19 17 23 23 H 1.48507 * 109.47241 * 209.99826 * 21 19 17 24 24 H 1.48500 * 109.47209 * 329.99791 * 21 19 17 25 25 H 1.08996 * 109.46579 * 299.99779 * 1 2 3 26 26 H 1.08994 * 109.47006 * 59.99645 * 1 2 3 27 27 H 1.08998 * 109.47007 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47129 * 295.00444 * 4 2 1 29 29 H 1.08998 * 109.47493 * 54.99950 * 4 2 1 30 30 H 1.09002 * 109.44794 * 30.76329 * 8 7 5 31 31 H 1.09003 * 109.44489 * 150.67551 * 8 7 5 32 32 H 1.09000 * 109.40110 * 168.47473 * 9 8 7 33 33 H 1.08998 * 109.28436 * 48.97425 * 9 8 7 34 34 H 1.09001 * 108.51152 * 301.47721 * 10 9 8 35 35 H 1.09003 * 108.38796 * 183.90003 * 10 9 8 36 36 H 1.08996 * 109.49088 * 155.01598 * 11 10 9 37 37 H 1.08993 * 109.49116 * 34.94293 * 11 10 9 38 38 H 1.09007 * 109.36800 * 331.69482 * 12 11 10 39 39 H 1.08999 * 109.36950 * 212.07947 * 12 11 10 40 40 H 1.09001 * 108.94592 * 258.55551 * 13 7 5 41 41 H 1.09001 * 108.94573 * 17.27324 * 13 7 5 42 42 H 1.00895 * 111.00497 * 151.03719 * 14 2 1 43 43 H 1.09001 * 109.47062 * 59.99745 * 15 14 2 44 44 H 1.08993 * 109.47084 * 299.99192 * 15 14 2 45 45 H 1.09001 * 109.46801 * 300.00064 * 16 15 14 46 46 H 1.09001 * 109.46998 * 59.99660 * 16 15 14 47 47 H 0.97007 * 120.00011 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 8 4.1450 -0.0212 -0.4442 7 7 4.2149 -1.1806 -2.3345 8 6 3.4670 -1.8871 -3.3502 9 6 3.3018 -3.3673 -2.9469 10 6 4.5879 -4.0727 -3.0567 11 6 5.6756 -3.5450 -2.1260 12 6 6.3683 -2.3747 -2.7795 13 6 5.6855 -1.0586 -2.3667 14 7 2.0198 -0.6926 1.1994 15 6 2.0826 0.2224 2.3468 16 6 2.5953 -0.5334 3.5744 17 6 2.6604 0.4054 4.7514 18 1 2.3651 1.4379 4.6356 19 6 3.0957 -0.0539 5.9763 20 7 3.1520 0.7654 7.0036 21 14 3.6056 -1.8397 6.1768 22 1 5.0561 -1.9756 5.8888 23 1 3.3341 -2.2788 7.5692 24 1 2.8320 -2.6844 5.2317 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7515 -1.7715 -1.2057 29 1 1.6054 -0.2618 -2.1370 30 1 2.4820 -1.4329 -3.4575 31 1 3.9990 -1.8277 -4.2998 32 1 2.5727 -3.8423 -3.6033 33 1 2.9467 -3.4225 -1.9178 34 1 4.9415 -3.9896 -4.0845 35 1 4.4224 -5.1266 -2.8331 36 1 6.4014 -4.3343 -1.9305 37 1 5.2259 -3.2232 -1.1868 38 1 6.3182 -2.4839 -3.8629 39 1 7.4127 -2.3532 -2.4683 40 1 5.9606 -0.2794 -3.0775 41 1 6.0388 -0.7738 -1.3756 42 1 2.9173 -1.1207 1.0286 43 1 1.0872 0.6162 2.5525 44 1 2.7591 1.0459 2.1182 45 1 1.9185 -1.3568 3.8029 46 1 3.5906 -0.9275 3.3689 47 1 3.4587 0.4423 7.8654 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346332701.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:30 Heat of formation + Delta-G solvation = -55.728751 kcal Electronic energy + Delta-G solvation = -23355.395052 eV Core-core repulsion = 20151.144357 eV Total energy + Delta-G solvation = -3204.250695 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.64458 -38.11338 -36.38011 -34.13437 -33.47165 -32.93871 -31.55208 -28.71250 -28.09539 -26.84442 -25.52951 -23.88538 -22.25703 -20.76716 -20.28878 -20.16663 -18.87502 -17.29808 -16.68523 -16.58572 -16.01109 -15.34058 -15.04750 -14.62798 -14.56086 -14.09168 -14.02013 -13.68513 -13.38547 -13.15492 -12.89612 -12.53815 -12.46094 -12.33722 -11.96558 -11.90399 -11.84019 -11.55220 -11.22339 -11.13372 -11.05538 -10.98938 -10.95074 -10.73237 -10.62761 -9.88416 -9.76563 -9.68806 -9.54764 -9.09535 -8.81047 -8.42804 -7.73056 -5.93953 -3.90781 2.57942 2.84197 3.40284 3.46216 3.53643 4.24958 4.46769 4.54599 4.56224 4.56388 4.67318 4.72489 4.80557 4.88827 5.02162 5.14842 5.26651 5.33567 5.37184 5.41071 5.44090 5.45267 5.61747 5.65284 5.71194 5.79553 5.82420 5.83407 5.85452 5.96021 6.00144 6.10594 6.25720 6.39392 6.40886 6.45254 6.61571 6.98892 7.21632 7.31281 7.56247 7.78911 7.92173 8.06941 8.18114 8.66087 9.11163 9.69295 11.19692 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017466 B = 0.004176 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.729627 B = 6702.586862 C = 7481.099723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.094 3.906 3 H 0.047 0.953 4 C -0.142 4.142 5 C 0.505 3.495 6 O -0.528 6.528 7 N -0.609 5.609 8 C 0.111 3.889 9 C -0.142 4.142 10 C -0.116 4.116 11 C -0.119 4.119 12 C -0.129 4.129 13 C 0.110 3.890 14 N -0.686 5.686 15 C 0.078 3.922 16 C -0.009 4.009 17 C -0.516 4.516 18 H 0.070 0.930 19 C 0.066 3.934 20 N -0.907 5.907 21 Si 0.881 3.119 22 H -0.279 1.279 23 H -0.289 1.289 24 H -0.264 1.264 25 H 0.060 0.940 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.059 0.941 41 H 0.091 0.909 42 H 0.338 0.662 43 H 0.060 0.940 44 H 0.024 0.976 45 H 0.022 0.978 46 H 0.007 0.993 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.031 -9.001 -27.529 28.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.017 4.017 3 H 0.065 0.935 4 C -0.182 4.182 5 C 0.294 3.706 6 O -0.403 6.403 7 N -0.343 5.343 8 C -0.013 4.013 9 C -0.180 4.180 10 C -0.154 4.154 11 C -0.157 4.157 12 C -0.167 4.167 13 C -0.012 4.012 14 N -0.319 5.319 15 C -0.050 4.050 16 C -0.047 4.047 17 C -0.554 4.554 18 H 0.088 0.912 19 C -0.135 4.135 20 N -0.546 5.546 21 Si 0.708 3.292 22 H -0.205 1.205 23 H -0.215 1.215 24 H -0.188 1.188 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.119 0.881 29 H 0.113 0.887 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.110 0.890 42 H 0.157 0.843 43 H 0.078 0.922 44 H 0.042 0.958 45 H 0.041 0.959 46 H 0.026 0.974 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.801 -8.912 -26.731 28.189 hybrid contribution 1.154 -0.442 -0.116 1.241 sum 1.955 -9.354 -26.846 28.496 Atomic orbital electron populations 1.21783 0.94526 1.02082 1.01207 1.21252 0.95287 0.96403 0.88712 0.93476 1.22026 0.91503 1.04073 1.00637 1.21016 0.90606 0.78203 0.80790 1.90767 1.70189 1.41579 1.37779 1.47726 1.06785 1.54650 1.25128 1.21476 0.96703 0.91953 0.91210 1.21245 0.98087 0.95745 1.02936 1.20436 0.95363 0.99891 0.99694 1.21078 0.97686 0.97394 0.99546 1.21752 0.99785 0.94525 1.00678 1.21808 0.78974 0.96889 1.03546 1.60827 1.33402 1.33707 1.03942 1.21898 0.99666 0.93628 0.89845 1.19527 0.95510 0.96610 0.93010 1.21106 1.43757 0.97697 0.92864 0.91155 1.24995 0.95147 0.97518 0.95806 1.69924 1.48208 1.35285 1.01201 0.86753 0.79249 0.86072 0.77101 1.20461 1.21514 1.18811 0.92055 0.93241 0.92187 0.88118 0.88738 0.90202 0.90574 0.90715 0.91238 0.92390 0.92379 0.91879 0.91297 0.91755 0.90701 0.92222 0.89046 0.84311 0.92151 0.95790 0.95932 0.97427 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.42 37.16 0.35 -1.43 16 2 C 0.09 1.41 2.21 -67.71 -0.15 1.27 16 3 H 0.05 0.80 7.61 -51.93 -0.40 0.41 16 4 C -0.14 -1.60 3.79 -27.88 -0.11 -1.71 16 5 C 0.51 6.72 7.09 -10.98 -0.08 6.64 16 6 O -0.53 -9.53 13.86 5.56 0.08 -9.45 16 7 N -0.61 -6.12 2.25 -172.91 -0.39 -6.51 16 8 C 0.11 0.75 5.13 -4.38 -0.02 0.73 16 9 C -0.14 -0.94 5.61 -28.88 -0.16 -1.10 16 10 C -0.12 -0.80 5.15 -29.79 -0.15 -0.95 16 11 C -0.12 -1.00 5.51 -28.02 -0.15 -1.16 16 12 C -0.13 -0.98 5.71 -27.32 -0.16 -1.14 16 13 C 0.11 1.08 6.10 -2.96 -0.02 1.06 16 14 N -0.69 -12.92 6.18 -106.72 -0.66 -13.58 16 15 C 0.08 1.77 5.42 -3.82 -0.02 1.75 16 16 C -0.01 -0.23 4.30 -27.88 -0.12 -0.35 16 17 C -0.52 -15.72 9.66 -34.44 -0.33 -16.05 16 18 H 0.07 2.29 7.99 -52.48 -0.42 1.87 16 19 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 20 N -0.91 -29.21 13.96 55.43 0.77 -28.44 16 21 Si 0.88 23.05 27.47 -169.99 -4.67 18.38 16 22 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 24 H -0.26 -6.69 6.54 56.52 0.37 -6.33 16 25 H 0.06 0.89 7.45 -51.93 -0.39 0.50 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.10 1.02 7.08 -51.93 -0.37 0.65 16 29 H 0.09 0.79 7.31 -51.93 -0.38 0.41 16 30 H 0.08 0.45 6.25 -51.93 -0.32 0.12 16 31 H 0.08 0.42 8.06 -51.93 -0.42 0.00 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.58 7.28 -51.93 -0.38 0.21 16 34 H 0.06 0.34 7.36 -51.93 -0.38 -0.04 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.76 7.48 -51.93 -0.39 0.37 16 38 H 0.06 0.41 7.32 -51.93 -0.38 0.03 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.09 1.15 6.96 -51.93 -0.36 0.78 16 42 H 0.34 6.60 6.50 -39.29 -0.26 6.35 16 43 H 0.06 1.35 7.44 -51.93 -0.39 0.97 16 44 H 0.02 0.57 8.05 -51.93 -0.42 0.16 16 45 H 0.02 0.60 7.20 -51.93 -0.37 0.22 16 46 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 47 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 LS Contribution 355.24 15.07 5.35 5.35 Total: -1.00 -34.66 355.24 -9.27 -43.93 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -8.53 Total: 0.84 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: -1.22 Total: -10.52 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: -0.28 Total: -48.53 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.08 Total: -9.45 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -4.67 Total: 18.38 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.66 -9.27 -43.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346332701.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.798 kcal (2) G-P(sol) polarization free energy of solvation -34.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds