Wall clock time and date at job start Tue Mar 31 2020 05:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99792 * 2 1 3 5 5 C 1.50707 * 109.47009 * 184.99986 * 4 2 1 6 6 O 1.21285 * 119.99764 * 359.97438 * 5 4 2 7 7 N 1.34773 * 120.00090 * 180.02562 * 5 4 2 8 8 C 1.44576 * 118.64410 * 359.73199 * 7 5 4 9 9 C 1.54312 * 109.90920 * 270.85673 * 8 7 5 10 10 C 1.47093 * 110.28858 * 288.75857 * 9 8 7 11 11 C 1.52565 * 114.33246 * 62.73593 * 10 9 8 12 12 C 1.50883 * 109.35373 * 274.97714 * 11 10 9 13 13 C 1.47609 * 118.64147 * 179.97438 * 7 5 4 14 14 N 1.46898 * 109.47006 * 239.99936 * 2 1 3 15 15 C 1.46900 * 110.99922 * 85.00294 * 14 2 1 16 16 C 1.53004 * 109.46707 * 179.97438 * 15 14 2 17 17 C 1.50699 * 109.46629 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00212 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99634 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00466 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00019 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.46937 * 90.00441 * 21 19 17 23 23 H 1.48497 * 109.47251 * 210.00462 * 21 19 17 24 24 H 1.48505 * 109.47081 * 330.00484 * 21 19 17 25 25 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 26 26 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 28 28 H 1.08994 * 109.47465 * 305.00017 * 4 2 1 29 29 H 1.08998 * 109.47565 * 65.00449 * 4 2 1 30 30 H 1.09004 * 109.44901 * 30.76270 * 8 7 5 31 31 H 1.09002 * 109.45105 * 150.68180 * 8 7 5 32 32 H 1.08993 * 109.39714 * 168.47091 * 9 8 7 33 33 H 1.08998 * 109.28382 * 48.97327 * 9 8 7 34 34 H 1.09004 * 108.51360 * 301.47222 * 10 9 8 35 35 H 1.09002 * 108.38555 * 183.90005 * 10 9 8 36 36 H 1.08998 * 109.49418 * 155.00836 * 11 10 9 37 37 H 1.08998 * 109.48814 * 34.93680 * 11 10 9 38 38 H 1.09003 * 109.36348 * 331.69133 * 12 11 10 39 39 H 1.08998 * 109.36667 * 212.07923 * 12 11 10 40 40 H 1.08997 * 108.94654 * 258.55521 * 13 7 5 41 41 H 1.09003 * 108.94785 * 17.27139 * 13 7 5 42 42 H 1.00893 * 111.00120 * 321.04546 * 14 2 1 43 43 H 1.08996 * 109.46839 * 299.99510 * 15 14 2 44 44 H 1.09003 * 109.47177 * 60.00055 * 15 14 2 45 45 H 1.08999 * 109.46901 * 299.99864 * 16 15 14 46 46 H 1.09003 * 109.47117 * 60.00189 * 16 15 14 47 47 H 0.96997 * 120.00601 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5419 -0.6149 1.3129 6 8 4.1451 -0.0212 0.4441 7 7 4.2149 -1.1805 2.3344 8 6 3.4661 -1.8771 3.3564 9 6 3.0621 -0.8932 4.4744 10 6 4.2421 -0.5024 5.2609 11 6 5.3085 0.2444 4.4655 12 6 6.2113 -0.7522 3.7811 13 6 5.6856 -1.0585 2.3666 14 7 2.0197 -0.6925 -1.1994 15 6 2.0825 0.2226 -2.3469 16 6 2.5963 -0.5330 -3.5741 17 6 2.6602 0.4057 -4.7514 18 1 2.3644 1.4379 -4.6357 19 6 3.0973 -0.0532 -5.9759 20 7 3.4580 -1.3100 -6.1167 21 14 3.1771 1.1104 -7.4351 22 1 4.5129 1.7576 -7.4795 23 1 2.9548 0.3474 -8.6895 24 1 2.1271 2.1514 -7.2962 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6053 -0.2617 2.1370 29 1 1.7516 -1.7715 1.2057 30 1 2.5668 -2.3086 2.9168 31 1 4.0808 -2.6722 3.7784 32 1 2.3332 -1.3696 5.1299 33 1 2.6156 -0.0047 4.0280 34 1 4.6909 -1.4022 5.6819 35 1 3.9127 0.1350 6.0815 36 1 5.8977 0.8651 5.1405 37 1 4.8289 0.8747 3.7167 38 1 6.2398 -1.6734 4.3632 39 1 7.2178 -0.3398 3.7112 40 1 6.1259 -1.9933 2.0196 41 1 5.9888 -0.2545 1.6959 42 1 1.4496 -1.4979 -1.4100 43 1 1.0872 0.6163 -2.5525 44 1 2.7590 1.0462 -2.1182 45 1 3.5917 -0.9263 -3.3681 46 1 1.9202 -1.3568 -3.8030 47 1 3.7651 -1.6329 -6.9782 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346332702.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:32 Heat of formation + Delta-G solvation = -56.174641 kcal Electronic energy + Delta-G solvation = -23088.621342 eV Core-core repulsion = 19884.351312 eV Total energy + Delta-G solvation = -3204.270030 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.30984 -37.83877 -36.41900 -33.88695 -33.40842 -32.87341 -31.36152 -28.44510 -27.63204 -26.68152 -25.38281 -23.90253 -22.17932 -20.74936 -20.52815 -20.25804 -18.64718 -16.99628 -16.44586 -16.25235 -15.75935 -15.01323 -14.77642 -14.61156 -14.31924 -14.07721 -13.92648 -13.75733 -13.25740 -13.13454 -12.70364 -12.38981 -12.34637 -12.26300 -11.91978 -11.73235 -11.71848 -11.40119 -11.03488 -10.99664 -10.94440 -10.87486 -10.82636 -10.68397 -10.54213 -10.42762 -9.86883 -9.34246 -9.21158 -9.01927 -8.51878 -8.24546 -7.55000 -5.89378 -3.90921 3.00986 3.09821 3.39014 3.44334 3.47892 4.36498 4.51856 4.54823 4.65783 4.73019 4.80509 4.87956 4.92150 5.07317 5.11630 5.29197 5.35061 5.44730 5.46378 5.49687 5.53760 5.57930 5.62389 5.66579 5.71873 5.77389 5.85868 5.90590 5.96408 5.99968 6.02988 6.13851 6.18063 6.32582 6.58597 6.64475 6.69403 7.18294 7.54335 7.67572 7.87110 7.99873 8.15311 8.25981 8.56301 8.57437 9.16734 9.71859 11.22268 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025264 B = 0.003350 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.051101 B = 8355.407693 C = 8989.983781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.095 3.905 3 H 0.079 0.921 4 C -0.126 4.126 5 C 0.512 3.488 6 O -0.503 6.503 7 N -0.617 5.617 8 C 0.113 3.887 9 C -0.140 4.140 10 C -0.116 4.116 11 C -0.116 4.116 12 C -0.130 4.130 13 C 0.112 3.888 14 N -0.674 5.674 15 C 0.074 3.926 16 C 0.027 3.973 17 C -0.517 4.517 18 H 0.053 0.947 19 C 0.056 3.944 20 N -0.895 5.895 21 Si 0.892 3.108 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.275 1.275 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.059 0.941 41 H 0.089 0.911 42 H 0.329 0.671 43 H 0.010 0.990 44 H 0.059 0.941 45 H 0.025 0.975 46 H 0.010 0.990 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.319 -1.369 26.243 26.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.016 4.016 3 H 0.097 0.903 4 C -0.166 4.166 5 C 0.300 3.700 6 O -0.376 6.376 7 N -0.353 5.353 8 C -0.011 4.011 9 C -0.179 4.179 10 C -0.153 4.153 11 C -0.154 4.154 12 C -0.168 4.168 13 C -0.010 4.010 14 N -0.303 5.303 15 C -0.054 4.054 16 C -0.011 4.011 17 C -0.556 4.556 18 H 0.071 0.929 19 C -0.144 4.144 20 N -0.534 5.534 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.200 1.200 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.108 0.892 42 H 0.146 0.854 43 H 0.028 0.972 44 H 0.077 0.923 45 H 0.043 0.957 46 H 0.029 0.971 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.233 -1.087 25.778 25.802 hybrid contribution -0.906 0.539 -0.899 1.385 sum -1.138 -0.549 24.879 24.912 Atomic orbital electron populations 1.22525 0.97604 1.01863 1.02040 1.21289 0.91379 0.98458 0.90508 0.90254 1.21792 0.92472 1.02854 0.99501 1.20688 0.90154 0.78394 0.80786 1.90766 1.69682 1.40530 1.36593 1.47709 1.06541 1.56386 1.24625 1.21391 0.96558 0.94255 0.88928 1.21241 0.98153 1.00392 0.98096 1.20436 0.96237 1.00218 0.98448 1.21056 0.96977 0.98080 0.99303 1.21771 0.99421 0.99553 0.96064 1.21739 0.79578 1.02566 0.97097 1.60570 1.55775 1.09846 1.04151 1.22081 0.97629 0.95370 0.90336 1.19042 0.96973 0.95126 0.89927 1.21206 1.43458 0.96382 0.94548 0.92856 1.25002 0.95543 0.95071 0.98826 1.69980 1.44761 1.14374 1.24325 0.86605 0.78382 0.80909 0.82148 1.20671 1.21305 1.19966 0.92147 0.92611 0.92728 0.89659 0.89280 0.90354 0.90844 0.90971 0.91667 0.92350 0.92666 0.92146 0.91496 0.91839 0.90898 0.92311 0.89228 0.85372 0.97162 0.92250 0.95676 0.97124 0.93131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.25 9.16 37.16 0.34 -1.91 16 2 C 0.10 1.44 2.15 -67.71 -0.15 1.29 16 3 H 0.08 1.35 7.61 -51.93 -0.40 0.96 16 4 C -0.13 -1.53 3.87 -27.88 -0.11 -1.64 16 5 C 0.51 7.64 7.49 -10.98 -0.08 7.56 16 6 O -0.50 -10.12 14.63 5.55 0.08 -10.04 16 7 N -0.62 -7.12 2.25 -172.86 -0.39 -7.51 16 8 C 0.11 0.91 5.13 -4.38 -0.02 0.89 16 9 C -0.14 -0.95 5.61 -28.88 -0.16 -1.12 16 10 C -0.12 -0.79 5.15 -29.79 -0.15 -0.95 16 11 C -0.12 -0.96 5.51 -28.02 -0.15 -1.11 16 12 C -0.13 -1.07 5.71 -27.28 -0.16 -1.23 16 13 C 0.11 1.27 6.11 -2.92 -0.02 1.25 16 14 N -0.67 -12.93 5.39 -106.72 -0.58 -13.51 16 15 C 0.07 1.70 5.42 -3.82 -0.02 1.68 16 16 C 0.03 0.75 5.23 -27.88 -0.15 0.60 16 17 C -0.52 -15.52 9.11 -34.44 -0.31 -15.84 16 18 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -28.13 13.29 55.43 0.74 -27.39 16 21 Si 0.89 22.60 29.54 -169.99 -5.02 17.58 16 22 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 25 H 0.06 0.84 7.45 -51.93 -0.39 0.45 16 26 H 0.05 0.63 8.13 -51.93 -0.42 0.21 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.09 0.80 7.08 -51.93 -0.37 0.43 16 29 H 0.09 0.97 7.31 -51.93 -0.38 0.59 16 30 H 0.08 0.57 6.25 -51.93 -0.32 0.24 16 31 H 0.07 0.52 8.06 -51.93 -0.42 0.10 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.51 7.28 -51.93 -0.38 0.14 16 34 H 0.06 0.36 7.36 -51.93 -0.38 -0.02 16 35 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.70 7.48 -51.93 -0.39 0.31 16 38 H 0.06 0.46 7.32 -51.93 -0.38 0.08 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.09 1.24 6.96 -51.93 -0.36 0.88 16 42 H 0.33 5.98 8.47 -39.30 -0.33 5.65 16 43 H 0.01 0.23 7.44 -51.93 -0.39 -0.16 16 44 H 0.06 1.45 8.06 -51.93 -0.42 1.03 16 45 H 0.02 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 360.96 15.07 5.44 5.44 Total: -1.00 -34.53 360.96 -9.61 -44.14 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -8.65 Total: 0.22 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: -1.24 Total: -8.92 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: -0.23 Total: -48.42 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.08 Total: -10.04 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.53 -9.61 -44.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346332702.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.031 kcal (2) G-P(sol) polarization free energy of solvation -34.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds