Wall clock time and date at job start Tue Mar 31 2020 05:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47740 * 2 1 4 4 C 1.52999 * 109.46830 * 120.00017 * 2 1 3 5 5 C 1.50704 * 109.47141 * 183.11107 * 4 2 1 6 6 H 1.08001 * 119.99680 * 1.70791 * 5 4 2 7 7 C 1.37878 * 120.00436 * 181.70691 * 5 4 2 8 8 N 1.31521 * 119.99313 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00485 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46990 * 59.99943 * 9 7 5 11 11 H 1.48494 * 109.47385 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47022 * 300.00000 * 9 7 5 13 13 N 1.46907 * 109.47216 * 239.99655 * 2 1 3 14 14 C 1.47897 * 110.99758 * 296.87918 * 13 2 1 15 15 C 1.54000 * 107.05708 * 145.84075 * 14 13 2 16 16 C 1.54601 * 105.13961 * 358.77499 * 15 14 13 17 17 H 1.09000 * 110.72497 * 96.57328 * 16 15 14 18 18 C 1.52997 * 110.72311 * 219.68661 * 16 15 14 19 19 N 1.46904 * 109.47001 * 293.54115 * 18 16 15 20 20 C 1.47013 * 110.99884 * 293.64108 * 19 18 16 21 21 C 1.53100 * 109.25488 * 177.60650 * 20 19 18 22 22 O 1.43016 * 109.26115 * 56.84681 * 21 20 19 23 23 C 1.43015 * 113.73449 * 301.33021 * 22 21 20 24 24 C 1.47010 * 111.00278 * 170.00207 * 19 18 16 25 25 C 1.48536 * 110.99507 * 54.27623 * 13 2 1 26 26 H 1.08994 * 109.47118 * 292.54199 * 1 2 3 27 27 H 1.09008 * 109.46711 * 52.53513 * 1 2 3 28 28 H 1.08992 * 109.47557 * 172.53406 * 1 2 3 29 29 H 1.08996 * 109.47337 * 303.11019 * 4 2 1 30 30 H 1.09005 * 109.47302 * 63.11435 * 4 2 1 31 31 H 0.97000 * 119.99171 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.92162 * 26.49213 * 14 13 2 33 33 H 1.09000 * 109.91670 * 265.19187 * 14 13 2 34 34 H 1.08994 * 110.31367 * 239.85569 * 15 14 13 35 35 H 1.08998 * 110.30617 * 117.68631 * 15 14 13 36 36 H 1.08997 * 109.47380 * 173.54797 * 18 16 15 37 37 H 1.08999 * 109.47433 * 53.53909 * 18 16 15 38 38 H 1.09002 * 109.50580 * 297.53645 * 20 19 18 39 39 H 1.09000 * 109.51210 * 57.67365 * 20 19 18 40 40 H 1.09004 * 109.50727 * 296.90824 * 21 20 19 41 41 H 1.09003 * 109.50559 * 176.77776 * 21 20 19 42 42 H 1.09000 * 109.50577 * 298.72839 * 23 22 21 43 43 H 1.09008 * 109.54068 * 178.62820 * 23 22 21 44 44 H 1.09005 * 109.50142 * 302.33175 * 24 19 18 45 45 H 1.08997 * 109.50800 * 62.45552 * 24 19 18 46 46 H 1.08994 * 110.67220 * 81.84467 * 25 13 2 47 47 H 1.09000 * 110.66424 * 318.70752 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5450 -0.6549 1.2885 6 1 4.0824 -0.1252 0.5158 7 6 4.2359 -1.2703 2.3107 8 7 3.5813 -1.9157 3.2514 9 14 6.1013 -1.1874 2.3598 10 1 6.5318 0.2316 2.4393 11 1 6.5984 -1.9223 3.5505 12 1 6.6568 -1.8050 1.1288 13 7 2.0197 -0.6926 -1.1994 14 6 1.6078 -2.1131 -1.1965 15 6 1.3520 -2.5123 -2.6617 16 6 1.6131 -1.2278 -3.4816 17 1 2.6263 -1.2259 -3.8833 18 6 0.5863 -1.0859 -4.6069 19 7 0.7801 -2.1642 -5.5855 20 6 2.0695 -2.0223 -6.2774 21 6 2.2567 -3.1962 -7.2421 22 8 1.1551 -3.2384 -8.1532 23 6 -0.1163 -3.3768 -7.5131 24 6 -0.3276 -2.2047 -6.5512 25 6 1.4337 -0.1035 -2.4307 26 1 -0.3633 0.3939 0.9491 27 1 -0.3633 0.6252 -0.8158 28 1 -0.3634 -1.0189 -0.1335 29 1 1.6318 -0.2407 2.1383 30 1 1.7228 -1.7638 1.2218 31 1 4.0674 -2.3489 3.9703 32 1 0.6945 -2.2337 -0.6140 33 1 2.4030 -2.7294 -0.7771 34 1 0.3205 -2.8399 -2.7900 35 1 2.0408 -3.3009 -2.9646 36 1 0.7166 -0.1217 -5.0983 37 1 -0.4194 -1.1489 -4.1913 38 1 2.0816 -1.0865 -6.8362 39 1 2.8771 -2.0204 -5.5454 40 1 2.2983 -4.1279 -6.6779 41 1 3.1846 -3.0653 -7.7989 42 1 -0.1437 -4.3138 -6.9569 43 1 -0.9051 -3.3770 -8.2655 44 1 -1.2698 -2.3359 -6.0190 45 1 -0.3538 -1.2718 -7.1144 46 1 1.9810 0.7912 -2.7273 47 1 0.3772 0.1212 -2.2844 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351335306.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:13 Heat of formation + Delta-G solvation = -36.050840 kcal Electronic energy + Delta-G solvation = -23321.979228 eV Core-core repulsion = 20118.581831 eV Total energy + Delta-G solvation = -3203.397397 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.94098 -38.88016 -36.23919 -33.97476 -32.21757 -31.41787 -29.83554 -28.70800 -27.25151 -27.05561 -24.29308 -23.86889 -22.89964 -21.66445 -20.68515 -19.74562 -18.34792 -16.81808 -16.34061 -16.16399 -15.86498 -15.50834 -15.29936 -14.84996 -14.63312 -14.39796 -14.08723 -13.56539 -13.22437 -13.09505 -12.74822 -12.30935 -12.20877 -11.81928 -11.73011 -11.63861 -11.47399 -11.27229 -11.05165 -10.94240 -10.85781 -10.66991 -10.59373 -10.46071 -10.37012 -10.09731 -9.85952 -9.82692 -9.09073 -9.01157 -8.55868 -8.23898 -7.47937 -5.87133 -3.85160 3.42305 3.45767 3.49698 3.49710 3.66374 4.52897 4.58055 4.66699 4.75095 4.85022 4.89404 4.93796 5.08318 5.11537 5.21522 5.29970 5.39092 5.46598 5.50075 5.52688 5.57093 5.63055 5.64411 5.70213 5.77222 5.91214 5.93522 6.01711 6.06099 6.14360 6.25453 6.39502 6.53540 6.56558 6.74362 6.76105 6.79871 6.87268 6.89786 6.99179 7.54912 7.70516 7.85342 8.03108 8.14907 8.59823 9.21146 9.76651 11.24828 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024332 B = 0.003601 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.456698 B = 7772.771566 C = 8442.431804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.076 3.924 3 H 0.069 0.931 4 C 0.028 3.972 5 C -0.492 4.492 6 H 0.061 0.939 7 C 0.051 3.949 8 N -0.904 5.904 9 Si 0.890 3.110 10 H -0.279 1.279 11 H -0.291 1.291 12 H -0.278 1.278 13 N -0.487 5.487 14 C 0.038 3.962 15 C -0.110 4.110 16 C -0.087 4.087 17 H 0.079 0.921 18 C 0.066 3.934 19 N -0.533 5.533 20 C 0.015 3.985 21 C 0.063 3.937 22 O -0.389 6.389 23 C 0.064 3.936 24 C 0.017 3.983 25 C 0.030 3.970 26 H 0.056 0.944 27 H 0.042 0.958 28 H 0.053 0.947 29 H 0.016 0.984 30 H 0.020 0.980 31 H 0.258 0.742 32 H 0.044 0.956 33 H 0.081 0.919 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.034 0.966 37 H 0.074 0.926 38 H 0.040 0.960 39 H 0.093 0.907 40 H 0.061 0.939 41 H 0.097 0.903 42 H 0.060 0.940 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.040 0.960 46 H 0.070 0.930 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.372 -0.852 -19.997 21.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.032 4.032 3 H 0.087 0.913 4 C -0.009 4.009 5 C -0.530 4.530 6 H 0.079 0.921 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.719 3.281 10 H -0.205 1.205 11 H -0.217 1.217 12 H -0.204 1.204 13 N -0.210 5.210 14 C -0.090 4.090 15 C -0.148 4.148 16 C -0.106 4.106 17 H 0.097 0.903 18 C -0.061 4.061 19 N -0.258 5.258 20 C -0.113 4.113 21 C -0.013 4.013 22 O -0.307 6.307 23 C -0.013 4.013 24 C -0.111 4.111 25 C -0.098 4.098 26 H 0.075 0.925 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.034 0.966 30 H 0.038 0.962 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.100 0.900 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.052 0.948 37 H 0.093 0.907 38 H 0.059 0.941 39 H 0.111 0.889 40 H 0.079 0.921 41 H 0.115 0.885 42 H 0.078 0.922 43 H 0.113 0.887 44 H 0.103 0.897 45 H 0.058 0.942 46 H 0.089 0.911 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -7.737 -1.336 -19.758 21.261 hybrid contribution 0.060 0.755 0.116 0.766 sum -7.678 -0.581 -19.642 21.097 Atomic orbital electron populations 1.22543 0.99921 1.01025 1.00960 1.22014 0.90015 0.98744 0.92447 0.91252 1.19212 0.96411 0.95414 0.89828 1.21151 0.91542 1.32258 1.08092 0.92126 1.25010 0.98045 0.95888 0.95928 1.69963 1.35242 1.36017 1.13299 0.86684 0.86372 0.77934 0.77113 1.20508 1.21673 1.20350 1.64967 1.53789 1.01518 1.00694 1.22848 1.00020 0.91134 0.94998 1.22313 1.00987 0.96917 0.94566 1.22064 0.98637 0.95981 0.93912 0.90278 1.22162 0.99872 0.91390 0.92711 1.62184 1.01700 1.46602 1.15286 1.22843 0.93189 0.98043 0.97238 1.22685 0.89581 0.97741 0.91338 1.87967 1.14886 1.94426 1.33451 1.22645 0.85821 0.97319 0.95504 1.22772 0.95406 0.98584 0.94323 1.23311 0.98020 0.97100 0.91411 0.92493 0.93861 0.92840 0.96571 0.96165 0.93284 0.93829 0.90027 0.92170 0.91698 0.94820 0.90734 0.94132 0.88923 0.92105 0.88524 0.92204 0.88673 0.89714 0.94185 0.91127 0.93804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.20 8.35 37.16 0.31 -2.89 16 2 C 0.08 1.57 2.48 -67.71 -0.17 1.40 16 3 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 4 C 0.03 0.73 4.23 -27.88 -0.12 0.61 16 5 C -0.49 -13.90 8.79 -34.44 -0.30 -14.20 16 6 H 0.06 1.72 7.74 -52.49 -0.41 1.31 16 7 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 8 N -0.90 -27.42 13.29 55.43 0.74 -26.68 16 9 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 N -0.49 -9.32 5.01 -222.50 -1.12 -10.44 16 14 C 0.04 0.69 5.07 -2.75 -0.01 0.68 16 15 C -0.11 -1.59 6.33 -25.37 -0.16 -1.75 16 16 C -0.09 -1.14 2.95 -88.75 -0.26 -1.40 16 17 H 0.08 1.08 6.46 -51.93 -0.34 0.75 16 18 C 0.07 0.73 4.29 -3.82 -0.02 0.71 16 19 N -0.53 -5.60 4.54 -234.31 -1.06 -6.67 16 20 C 0.01 0.15 5.45 -3.71 -0.02 0.13 16 21 C 0.06 0.60 7.01 37.21 0.26 0.86 16 22 O -0.39 -4.16 10.83 -35.23 -0.38 -4.54 16 23 C 0.06 0.56 7.01 37.20 0.26 0.82 16 24 C 0.02 0.16 5.64 -3.72 -0.02 0.14 16 25 C 0.03 0.46 5.79 -1.89 -0.01 0.45 16 26 H 0.06 0.97 8.13 -51.93 -0.42 0.55 16 27 H 0.04 0.65 6.39 -51.92 -0.33 0.32 16 28 H 0.05 0.91 5.95 -51.93 -0.31 0.60 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.02 0.55 6.76 -51.93 -0.35 0.20 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.04 0.81 5.28 -51.93 -0.27 0.54 16 33 H 0.08 1.72 8.13 -51.93 -0.42 1.30 16 34 H 0.06 0.82 7.80 -51.93 -0.41 0.42 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.03 0.36 8.12 -51.93 -0.42 -0.06 16 37 H 0.07 0.80 7.97 -51.93 -0.41 0.39 16 38 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.09 0.95 6.34 -51.93 -0.33 0.62 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.10 0.64 8.14 -51.92 -0.42 0.22 16 44 H 0.08 0.68 8.09 -51.93 -0.42 0.26 16 45 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 47 H 0.04 0.63 5.52 -51.93 -0.29 0.34 16 LS Contribution 351.79 15.07 5.30 5.30 Total: -1.00 -30.69 351.79 -10.39 -41.08 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -8.49 Total: -2.17 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -0.36 Total: -13.09 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: -1.44 Total: -43.79 kcal Atomic # 8 Polarization: -4.16 SS G_CDS: -0.38 Total: -4.54 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.69 -10.39 -41.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351335306.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.031 kcal (2) G-P(sol) polarization free energy of solvation -30.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds