Wall clock time and date at job start Tue Mar 31 2020 05:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46836 * 2 1 4 4 C 1.53003 * 109.47028 * 240.00132 * 2 1 3 5 5 C 1.50700 * 109.47142 * 174.99768 * 4 2 1 6 6 H 1.08002 * 119.99990 * 0.02562 * 5 4 2 7 7 C 1.37873 * 119.99909 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00111 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00081 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46996 * 59.99890 * 9 7 5 11 11 H 1.48499 * 109.47247 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46715 * 299.99778 * 9 7 5 13 13 N 1.46897 * 109.47299 * 120.00072 * 2 1 3 14 14 C 1.48530 * 110.99896 * 49.10192 * 13 2 1 15 15 C 1.55198 * 103.23572 * 200.25417 * 14 13 2 16 16 C 1.54602 * 102.80040 * 37.43848 * 15 14 13 17 17 H 1.08993 * 110.30969 * 96.97984 * 16 15 14 18 18 C 1.53003 * 110.30721 * 219.04823 * 16 15 14 19 19 N 1.46905 * 109.46908 * 292.20981 * 18 16 15 20 20 C 1.47011 * 110.99756 * 293.63328 * 19 18 16 21 21 C 1.53094 * 109.25751 * 177.61214 * 20 19 18 22 22 O 1.43011 * 109.26121 * 56.84893 * 21 20 19 23 23 C 1.43018 * 113.73503 * 301.33189 * 22 21 20 24 24 C 1.47010 * 110.99607 * 169.99880 * 19 18 16 25 25 C 1.47900 * 110.99877 * 291.70434 * 13 2 1 26 26 H 1.09003 * 109.47145 * 172.45644 * 1 2 3 27 27 H 1.09006 * 109.46884 * 292.45704 * 1 2 3 28 28 H 1.08998 * 109.47356 * 52.45391 * 1 2 3 29 29 H 1.09005 * 109.46976 * 295.00344 * 4 2 1 30 30 H 1.09000 * 109.47007 * 54.99729 * 4 2 1 31 31 H 0.97005 * 120.00349 * 180.02562 * 8 7 5 32 32 H 1.09001 * 110.67217 * 318.71168 * 14 13 2 33 33 H 1.08999 * 110.66900 * 81.84455 * 14 13 2 34 34 H 1.08997 * 110.76309 * 279.12677 * 15 14 13 35 35 H 1.09002 * 110.79755 * 155.76236 * 15 14 13 36 36 H 1.09001 * 109.46686 * 52.20666 * 18 16 15 37 37 H 1.08999 * 109.46815 * 172.20719 * 18 16 15 38 38 H 1.09007 * 109.50502 * 297.54434 * 20 19 18 39 39 H 1.09000 * 109.50504 * 57.67384 * 20 19 18 40 40 H 1.09001 * 109.50441 * 296.90935 * 21 20 19 41 41 H 1.09002 * 109.50863 * 176.78640 * 21 20 19 42 42 H 1.08998 * 109.51072 * 298.73183 * 23 22 21 43 43 H 1.09002 * 109.54192 * 178.62926 * 23 22 21 44 44 H 1.08999 * 109.51217 * 302.32600 * 24 19 18 45 45 H 1.09003 * 109.50625 * 62.45953 * 24 19 18 46 46 H 1.09003 * 109.91669 * 26.49650 * 25 13 2 47 47 H 1.08999 * 110.08470 * 265.28739 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 1 4.0790 -0.0861 -0.5393 7 6 4.2304 -1.1934 -2.3579 8 7 3.5764 -1.8377 -3.2996 9 14 6.0921 -1.0622 -2.4363 10 1 6.6838 -1.6882 -1.2267 11 1 6.5872 -1.7632 -3.6482 12 1 6.4854 0.3685 -2.4961 13 7 2.0197 -0.6925 1.1994 14 6 1.3412 -2.0024 1.3720 15 6 1.5608 -2.3210 2.8749 16 6 1.4292 -0.9327 3.5422 17 1 0.4204 -0.7937 3.9307 18 6 2.4556 -0.7847 4.6672 19 7 2.1157 -1.7014 5.7637 20 6 0.8493 -1.3134 6.4014 21 6 0.5038 -2.3266 7.4958 22 8 1.5825 -2.3958 8.4322 23 6 2.8312 -2.7717 7.8451 24 6 3.2004 -1.7630 6.7542 25 6 1.7150 0.0836 2.4210 26 1 -0.3633 -1.0188 -0.1349 27 1 -0.3633 0.3926 0.9498 28 1 -0.3634 0.6262 -0.8148 29 1 1.7516 -1.7715 -1.2057 30 1 1.6053 -0.2617 -2.1370 31 1 4.0608 -2.2452 -4.0347 32 1 0.2779 -1.9175 1.1478 33 1 1.8079 -2.7629 0.7458 34 1 2.5550 -2.7360 3.0407 35 1 0.7918 -3.0003 3.2430 36 1 3.4484 -1.0252 4.2871 37 1 2.4460 0.2412 5.0351 38 1 0.9528 -0.3220 6.8427 39 1 0.0553 -1.2990 5.6548 40 1 0.3475 -3.3077 7.0473 41 1 -0.4046 -2.0118 8.0096 42 1 2.7428 -3.7657 7.4068 43 1 3.6066 -2.7794 8.6111 44 1 4.1226 -2.0768 6.2652 45 1 3.3414 -0.7788 7.2011 46 1 0.8379 0.7090 2.2544 47 1 2.5682 0.7053 2.6921 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351335308.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:16 Heat of formation + Delta-G solvation = -36.260443 kcal Electronic energy + Delta-G solvation = -23295.529538 eV Core-core repulsion = 20092.123052 eV Total energy + Delta-G solvation = -3203.406486 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.93965 -38.86481 -36.21945 -33.98732 -32.21988 -31.41847 -29.77264 -28.70800 -27.25987 -27.11146 -24.27721 -23.80731 -22.96622 -21.65578 -20.65302 -19.65149 -18.65717 -16.89273 -16.34454 -16.13514 -15.63353 -15.31428 -15.23771 -15.14894 -14.56373 -14.31450 -13.91365 -13.71052 -13.47607 -13.06729 -12.70276 -12.23409 -12.09773 -11.75095 -11.74384 -11.62920 -11.55273 -11.42334 -11.01263 -10.91407 -10.80628 -10.70358 -10.58565 -10.50393 -10.38689 -10.09795 -9.90378 -9.80682 -9.14456 -8.97552 -8.53260 -8.22822 -7.48764 -5.85537 -3.83212 3.42793 3.46301 3.50049 3.51803 3.67491 4.58690 4.61804 4.66783 4.75872 4.76383 4.91032 4.93503 5.05148 5.09176 5.17700 5.28846 5.38585 5.49597 5.51664 5.53460 5.58801 5.65923 5.69291 5.76209 5.79955 5.85743 5.90910 5.94540 6.06137 6.09958 6.25843 6.37090 6.50861 6.56601 6.64759 6.77120 6.78331 6.83875 6.90060 7.02927 7.54409 7.66201 7.87513 8.04833 8.15781 8.61981 9.22277 9.78172 11.26541 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022912 B = 0.003672 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.785320 B = 7623.358923 C = 8377.663405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.077 3.923 3 H 0.067 0.933 4 C 0.034 3.966 5 C -0.490 4.490 6 H 0.059 0.941 7 C 0.050 3.950 8 N -0.905 5.905 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.291 1.291 12 H -0.280 1.280 13 N -0.485 5.485 14 C 0.030 3.970 15 C -0.101 4.101 16 C -0.092 4.092 17 H 0.066 0.934 18 C 0.067 3.933 19 N -0.533 5.533 20 C 0.015 3.985 21 C 0.064 3.936 22 O -0.389 6.389 23 C 0.064 3.936 24 C 0.017 3.983 25 C 0.035 3.965 26 H 0.056 0.944 27 H 0.041 0.959 28 H 0.054 0.946 29 H 0.017 0.983 30 H 0.017 0.983 31 H 0.257 0.743 32 H 0.043 0.957 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.083 0.917 37 H 0.032 0.968 38 H 0.040 0.960 39 H 0.088 0.912 40 H 0.060 0.940 41 H 0.095 0.905 42 H 0.060 0.940 43 H 0.096 0.904 44 H 0.087 0.913 45 H 0.040 0.960 46 H 0.039 0.961 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.243 0.075 20.573 21.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.032 4.032 3 H 0.085 0.915 4 C -0.003 4.003 5 C -0.528 4.528 6 H 0.077 0.923 7 C -0.149 4.149 8 N -0.546 5.546 9 Si 0.718 3.282 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.205 1.205 13 N -0.208 5.208 14 C -0.097 4.097 15 C -0.139 4.139 16 C -0.112 4.112 17 H 0.085 0.915 18 C -0.060 4.060 19 N -0.258 5.258 20 C -0.113 4.113 21 C -0.013 4.013 22 O -0.307 6.307 23 C -0.013 4.013 24 C -0.111 4.111 25 C -0.094 4.094 26 H 0.075 0.925 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.036 0.964 30 H 0.035 0.965 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.102 0.898 37 H 0.050 0.950 38 H 0.058 0.942 39 H 0.106 0.894 40 H 0.078 0.922 41 H 0.113 0.887 42 H 0.078 0.922 43 H 0.114 0.886 44 H 0.106 0.894 45 H 0.058 0.942 46 H 0.057 0.943 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.715 -0.504 20.330 21.124 hybrid contribution 0.286 1.015 -0.097 1.059 sum -5.429 0.511 20.233 20.955 Atomic orbital electron populations 1.22527 0.99835 1.01579 1.00327 1.22047 0.90057 0.98445 0.92641 0.91465 1.19115 0.96274 0.95283 0.89645 1.21135 0.91849 1.32954 1.06883 0.92282 1.25000 0.97977 0.95901 0.96003 1.69955 1.35281 1.36957 1.12394 0.86694 0.86434 0.77954 0.77074 1.20374 1.21665 1.20544 1.64969 1.53392 1.02029 1.00432 1.23358 0.97063 0.93506 0.95815 1.22428 1.02045 0.95193 0.94271 1.21994 0.97950 0.96732 0.94491 0.91532 1.22249 0.99939 0.93184 0.90639 1.62187 1.02432 1.51240 1.09975 1.22823 0.93663 0.97538 0.97265 1.22663 0.89782 0.98834 0.90033 1.87965 1.17928 1.90118 1.34732 1.22662 0.86041 0.97264 0.95329 1.22775 0.95446 0.99151 0.93712 1.22912 0.99502 0.96015 0.91001 0.92530 0.94055 0.92697 0.96423 0.96519 0.93299 0.93935 0.89795 0.90834 0.92036 0.89819 0.95002 0.94214 0.89353 0.92195 0.88680 0.92162 0.88608 0.89426 0.94170 0.94283 0.91217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.17 8.18 37.16 0.30 -2.87 16 2 C 0.08 1.57 2.22 -67.71 -0.15 1.42 16 3 H 0.07 1.42 8.10 -51.93 -0.42 1.00 16 4 C 0.03 0.87 4.46 -27.88 -0.12 0.75 16 5 C -0.49 -13.90 8.84 -34.44 -0.30 -14.20 16 6 H 0.06 1.67 7.74 -52.49 -0.41 1.27 16 7 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 8 N -0.90 -27.55 13.29 55.43 0.74 -26.81 16 9 Si 0.89 22.26 29.54 -169.99 -5.02 17.24 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 N -0.49 -9.23 4.96 -222.33 -1.10 -10.33 16 14 C 0.03 0.53 5.57 -1.76 -0.01 0.52 16 15 C -0.10 -1.44 6.46 -24.73 -0.16 -1.60 16 16 C -0.09 -1.19 2.93 -89.26 -0.26 -1.45 16 17 H 0.07 0.79 6.34 -51.93 -0.33 0.46 16 18 C 0.07 0.79 4.04 -3.82 -0.02 0.78 16 19 N -0.53 -5.76 4.56 -234.31 -1.07 -6.82 16 20 C 0.02 0.15 5.45 -3.72 -0.02 0.13 16 21 C 0.06 0.57 7.01 37.21 0.26 0.83 16 22 O -0.39 -4.15 10.83 -35.23 -0.38 -4.53 16 23 C 0.06 0.57 7.01 37.21 0.26 0.84 16 24 C 0.02 0.17 5.64 -3.71 -0.02 0.15 16 25 C 0.03 0.53 6.10 -2.75 -0.02 0.51 16 26 H 0.06 0.98 6.40 -51.93 -0.33 0.65 16 27 H 0.04 0.63 6.28 -51.93 -0.33 0.30 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.02 0.48 7.09 -51.93 -0.37 0.11 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.04 0.71 5.46 -51.93 -0.28 0.43 16 33 H 0.08 1.67 7.65 -51.93 -0.40 1.27 16 34 H 0.07 1.12 7.79 -51.93 -0.40 0.72 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.08 1.07 7.93 -51.93 -0.41 0.66 16 37 H 0.03 0.36 8.12 -51.93 -0.42 -0.06 16 38 H 0.04 0.40 8.14 -51.92 -0.42 -0.03 16 39 H 0.09 0.81 6.29 -51.93 -0.33 0.49 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.09 0.80 8.09 -51.93 -0.42 0.38 16 45 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.04 0.58 6.01 -51.93 -0.31 0.26 16 47 H 0.07 1.07 7.68 -51.93 -0.40 0.67 16 LS Contribution 352.40 15.07 5.31 5.31 Total: -1.00 -30.84 352.40 -10.38 -41.22 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -8.50 Total: -2.45 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -0.36 Total: -12.83 kcal Atomic # 7 Polarization: -42.53 SS G_CDS: -1.43 Total: -43.97 kcal Atomic # 8 Polarization: -4.15 SS G_CDS: -0.38 Total: -4.53 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.84 -10.38 -41.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351335308.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.961 kcal (2) G-P(sol) polarization free energy of solvation -30.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds