Wall clock time and date at job start Tue Mar 31 2020 05:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46976 * 2 1 4 4 C 1.52999 * 109.46957 * 120.00368 * 2 1 3 5 5 C 1.50700 * 109.46923 * 185.15610 * 4 2 1 6 6 H 1.08001 * 119.99893 * 5.01074 * 5 4 2 7 7 C 1.37871 * 119.99920 * 185.00752 * 5 4 2 8 8 N 1.31516 * 120.00262 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00054 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47210 * 59.99811 * 9 7 5 11 11 H 1.48501 * 109.47400 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47059 * 300.00120 * 9 7 5 13 13 N 1.46894 * 109.46872 * 240.00392 * 2 1 3 14 14 C 1.47903 * 111.00202 * 67.84079 * 13 2 1 15 15 C 1.53996 * 107.22953 * 214.25456 * 14 13 2 16 16 C 1.54594 * 105.13776 * 1.12671 * 15 14 13 17 17 H 1.09005 * 110.72812 * 263.59801 * 16 15 14 18 18 C 1.52999 * 110.72627 * 140.49314 * 16 15 14 19 19 N 1.46898 * 109.47116 * 64.54102 * 18 16 15 20 20 C 1.47015 * 111.00277 * 199.00311 * 19 18 16 21 21 C 1.53093 * 109.25902 * 177.61064 * 20 19 18 22 22 O 1.43009 * 109.26126 * 56.85068 * 21 20 19 23 23 C 1.43020 * 113.73737 * 301.33036 * 22 21 20 24 24 C 1.47013 * 110.99713 * 75.37088 * 19 18 16 25 25 C 1.48814 * 111.18652 * 310.50595 * 13 2 1 26 26 H 1.09004 * 109.46772 * 307.80954 * 1 2 3 27 27 H 1.09000 * 109.47314 * 67.80175 * 1 2 3 28 28 H 1.08995 * 109.47155 * 187.81078 * 1 2 3 29 29 H 1.08998 * 109.47241 * 305.15470 * 4 2 1 30 30 H 1.09002 * 109.47201 * 65.15570 * 4 2 1 31 31 H 0.97004 * 119.99959 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.91507 * 94.80263 * 14 13 2 33 33 H 1.08998 * 109.92005 * 333.70840 * 14 13 2 34 34 H 1.08999 * 110.30711 * 120.03969 * 15 14 13 35 35 H 1.08996 * 110.31157 * 242.11641 * 15 14 13 36 36 H 1.09000 * 109.47752 * 184.54545 * 18 16 15 37 37 H 1.09007 * 109.47052 * 304.54531 * 18 16 15 38 38 H 1.08999 * 109.50703 * 297.54578 * 20 19 18 39 39 H 1.09002 * 109.50002 * 57.67588 * 20 19 18 40 40 H 1.09005 * 109.50642 * 296.91612 * 21 20 19 41 41 H 1.09001 * 109.50751 * 176.78870 * 21 20 19 42 42 H 1.08994 * 109.50836 * 298.73617 * 23 22 21 43 43 H 1.09000 * 109.50491 * 178.60208 * 23 22 21 44 44 H 1.08998 * 109.50744 * 302.32717 * 24 19 18 45 45 H 1.09004 * 109.50835 * 62.41783 * 24 19 18 46 46 H 1.09005 * 110.51777 * 41.07058 * 25 13 2 47 47 H 1.08996 * 110.84180 * 278.09360 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5416 -0.6117 1.3147 6 1 4.0715 -0.0133 0.5884 7 6 4.2388 -1.2753 2.3018 8 7 3.5934 -2.0035 3.1866 9 14 6.1000 -1.1388 2.3835 10 1 6.4845 0.2837 2.5671 11 1 6.6055 -1.9403 3.5269 12 1 6.6898 -1.6519 1.1209 13 7 2.0196 -0.6924 -1.1995 14 6 1.7053 0.0785 -2.4219 15 6 1.4186 -0.9391 -3.5417 16 6 1.5609 -2.3257 -2.8733 17 1 2.5561 -2.7362 -3.0445 18 6 0.4859 -3.2865 -3.3852 19 7 0.6892 -3.5295 -4.8196 20 6 -0.5330 -4.0579 -5.4429 21 6 -0.2960 -4.2398 -6.9444 22 8 0.8288 -5.1003 -7.1436 23 6 2.0365 -4.6159 -6.5500 24 6 1.8231 -4.4377 -5.0445 25 6 1.3491 -2.0098 -1.3713 26 1 -0.3633 0.6300 0.8120 27 1 -0.3634 0.3883 -0.9515 28 1 -0.3633 -1.0181 0.1397 29 1 1.6032 -0.2637 2.1368 30 1 1.7540 -1.7722 1.2042 31 1 4.0840 -2.4707 3.8809 32 1 2.5557 0.7027 -2.6962 33 1 0.8270 0.7014 -2.2526 34 1 0.4067 -0.8056 -3.9242 35 1 2.1446 -0.8296 -4.3474 36 1 0.5539 -4.2300 -2.8436 37 1 -0.4991 -2.8471 -3.2272 38 1 -0.7836 -5.0194 -4.9949 39 1 -1.3534 -3.3576 -5.2861 40 1 -0.0981 -3.2704 -7.4017 41 1 -1.1800 -4.6848 -7.4012 42 1 2.3022 -3.6574 -6.9958 43 1 2.8394 -5.3329 -6.7215 44 1 2.7225 -4.0148 -4.5969 45 1 1.6104 -5.4052 -4.5895 46 1 0.2867 -1.9307 -1.1409 47 1 1.8211 -2.7693 -0.7481 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351335309.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:18 Heat of formation + Delta-G solvation = -37.572906 kcal Electronic energy + Delta-G solvation = -23351.825225 eV Core-core repulsion = 20148.361827 eV Total energy + Delta-G solvation = -3203.463399 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.88583 -38.84008 -36.16751 -33.98877 -32.21976 -31.39819 -30.08676 -28.19580 -27.41785 -27.11368 -24.25489 -23.88256 -23.15368 -21.25419 -20.70113 -19.67144 -18.66443 -16.72008 -16.34678 -16.13128 -15.73654 -15.53797 -15.26554 -14.91240 -14.50583 -14.28476 -14.05915 -13.56721 -13.47290 -12.93196 -12.74867 -12.30418 -12.18083 -11.86565 -11.69302 -11.64049 -11.56193 -11.16320 -11.13230 -10.90974 -10.84546 -10.70594 -10.57476 -10.42140 -10.34670 -10.06550 -9.94500 -9.80349 -9.14414 -8.98266 -8.52367 -8.23376 -7.47621 -5.86124 -3.83689 3.42685 3.46017 3.50085 3.52499 3.69139 4.56012 4.59151 4.68794 4.78217 4.85380 4.92245 4.98526 5.09733 5.14974 5.21938 5.31986 5.41287 5.47856 5.51810 5.55893 5.56509 5.61379 5.71086 5.74278 5.79760 5.89014 5.93772 6.02907 6.06266 6.09233 6.24857 6.43370 6.47320 6.58334 6.61685 6.74633 6.80778 6.83802 6.92122 7.03307 7.53371 7.65770 7.86801 8.05040 8.15123 8.60892 9.21284 9.77580 11.25882 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021242 B = 0.003791 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.807565 B = 7384.568814 C = 8048.815001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.077 3.923 3 H 0.068 0.932 4 C 0.033 3.967 5 C -0.489 4.489 6 H 0.058 0.942 7 C 0.051 3.949 8 N -0.905 5.905 9 Si 0.890 3.110 10 H -0.279 1.279 11 H -0.291 1.291 12 H -0.278 1.278 13 N -0.485 5.485 14 C 0.025 3.975 15 C -0.105 4.105 16 C -0.085 4.085 17 H 0.079 0.921 18 C 0.065 3.935 19 N -0.533 5.533 20 C 0.017 3.983 21 C 0.065 3.935 22 O -0.389 6.389 23 C 0.064 3.936 24 C 0.016 3.984 25 C 0.041 3.959 26 H 0.054 0.946 27 H 0.042 0.958 28 H 0.054 0.946 29 H 0.013 0.987 30 H 0.021 0.979 31 H 0.257 0.743 32 H 0.068 0.932 33 H 0.037 0.963 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.039 0.961 37 H 0.072 0.928 38 H 0.041 0.959 39 H 0.084 0.916 40 H 0.059 0.941 41 H 0.095 0.905 42 H 0.060 0.940 43 H 0.097 0.903 44 H 0.091 0.909 45 H 0.042 0.958 46 H 0.044 0.956 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.713 -3.176 -18.615 20.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.031 4.031 3 H 0.086 0.914 4 C -0.004 4.004 5 C -0.527 4.527 6 H 0.076 0.924 7 C -0.148 4.148 8 N -0.546 5.546 9 Si 0.718 3.282 10 H -0.205 1.205 11 H -0.217 1.217 12 H -0.204 1.204 13 N -0.208 5.208 14 C -0.103 4.103 15 C -0.143 4.143 16 C -0.105 4.105 17 H 0.097 0.903 18 C -0.063 4.063 19 N -0.258 5.258 20 C -0.111 4.111 21 C -0.012 4.012 22 O -0.307 6.307 23 C -0.013 4.013 24 C -0.113 4.113 25 C -0.087 4.087 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.032 0.968 30 H 0.039 0.961 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.055 0.945 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.057 0.943 37 H 0.091 0.909 38 H 0.059 0.941 39 H 0.103 0.897 40 H 0.077 0.923 41 H 0.113 0.887 42 H 0.078 0.922 43 H 0.115 0.885 44 H 0.109 0.891 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.009 -3.053 -18.707 20.577 hybrid contribution -0.045 -0.359 0.724 0.809 sum -8.054 -3.411 -17.983 19.998 Atomic orbital electron populations 1.22528 0.99855 1.01486 1.00419 1.22037 0.90037 0.98439 0.92596 0.91396 1.19125 0.96251 0.95456 0.89575 1.21119 0.91841 1.28370 1.11409 0.92382 1.24988 0.98002 0.95815 0.96031 1.69956 1.35286 1.32489 1.16877 0.86696 0.86407 0.77840 0.77227 1.20515 1.21672 1.20369 1.64995 1.53398 1.01744 1.00709 1.22962 0.99331 0.96628 0.91421 1.22209 1.01015 0.93812 0.97264 1.22039 0.98543 0.94908 0.94987 0.90295 1.22160 0.99384 0.98506 0.86217 1.62188 1.04219 1.45405 1.13998 1.22788 0.93328 0.99200 0.95814 1.22644 0.89328 0.94845 0.94427 1.87970 1.18205 1.48006 1.76542 1.22676 0.86976 1.00038 0.91585 1.22839 0.95771 0.95302 0.97354 1.23268 0.97358 0.93759 0.94308 0.92707 0.93910 0.92662 0.96833 0.96100 0.93315 0.91363 0.94461 0.92210 0.91763 0.94273 0.90926 0.94110 0.89744 0.92292 0.88700 0.92216 0.88534 0.89081 0.93980 0.93797 0.89866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.17 8.19 37.16 0.30 -2.87 16 2 C 0.08 1.60 2.23 -67.71 -0.15 1.45 16 3 H 0.07 1.44 8.11 -51.93 -0.42 1.02 16 4 C 0.03 0.85 4.45 -27.88 -0.12 0.72 16 5 C -0.49 -13.88 8.84 -34.44 -0.30 -14.19 16 6 H 0.06 1.65 7.75 -52.49 -0.41 1.24 16 7 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 8 N -0.91 -27.48 13.29 55.43 0.74 -26.74 16 9 Si 0.89 22.27 29.54 -169.99 -5.02 17.25 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 N -0.49 -9.35 4.97 -222.25 -1.10 -10.46 16 14 C 0.02 0.39 6.42 -2.75 -0.02 0.38 16 15 C -0.10 -1.41 6.28 -25.37 -0.16 -1.57 16 16 C -0.09 -1.19 3.08 -88.76 -0.27 -1.46 16 17 H 0.08 1.18 6.91 -51.93 -0.36 0.82 16 18 C 0.07 0.77 4.34 -3.83 -0.02 0.75 16 19 N -0.53 -5.78 4.43 -234.31 -1.04 -6.82 16 20 C 0.02 0.16 5.60 -3.71 -0.02 0.14 16 21 C 0.06 0.57 7.01 37.21 0.26 0.83 16 22 O -0.39 -4.23 10.83 -35.23 -0.38 -4.61 16 23 C 0.06 0.61 7.01 37.21 0.26 0.87 16 24 C 0.02 0.16 5.47 -3.71 -0.02 0.14 16 25 C 0.04 0.71 5.03 -1.74 -0.01 0.70 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.04 0.65 6.24 -51.93 -0.32 0.33 16 28 H 0.05 0.95 6.42 -51.93 -0.33 0.62 16 29 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.02 0.57 7.09 -51.93 -0.37 0.20 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.04 0.56 5.98 -51.93 -0.31 0.25 16 34 H 0.06 0.75 7.83 -51.93 -0.41 0.34 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.04 0.48 8.00 -51.93 -0.42 0.06 16 37 H 0.07 0.83 7.84 -51.92 -0.41 0.42 16 38 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.70 8.02 -51.93 -0.42 0.28 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.09 0.97 6.81 -51.93 -0.35 0.61 16 45 H 0.04 0.46 8.13 -51.93 -0.42 0.04 16 46 H 0.04 0.72 5.40 -51.93 -0.28 0.44 16 47 H 0.08 1.64 7.66 -51.93 -0.40 1.25 16 LS Contribution 353.55 15.07 5.33 5.33 Total: -1.00 -30.82 353.55 -10.41 -41.23 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -8.56 Total: -2.46 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -0.37 Total: -12.72 kcal Atomic # 7 Polarization: -42.61 SS G_CDS: -1.40 Total: -44.01 kcal Atomic # 8 Polarization: -4.23 SS G_CDS: -0.38 Total: -4.61 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.82 -10.41 -41.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351335309.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.659 kcal (2) G-P(sol) polarization free energy of solvation -30.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds