Wall clock time and date at job start Tue Mar 31 2020 05:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47335 * 2 1 4 4 C 1.53000 * 109.46928 * 239.99930 * 2 1 3 5 5 C 1.50696 * 109.47456 * 176.98060 * 4 2 1 6 6 H 1.08008 * 119.99823 * 4.88452 * 5 4 2 7 7 C 1.37869 * 120.00674 * 184.88135 * 5 4 2 8 8 N 1.31521 * 119.99796 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00575 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47164 * 59.99771 * 9 7 5 11 11 H 1.48494 * 109.47314 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46845 * 300.00177 * 9 7 5 13 13 N 1.46904 * 109.47176 * 120.00436 * 2 1 3 14 14 C 1.47888 * 111.01121 * 298.04392 * 13 2 1 15 15 C 1.54913 * 104.76983 * 146.32991 * 14 13 2 16 16 C 1.55137 * 101.68908 * 322.98440 * 15 14 13 17 17 H 1.09003 * 110.70198 * 277.25091 * 16 15 14 18 18 C 1.53000 * 110.70478 * 154.01812 * 16 15 14 19 19 N 1.46900 * 109.47488 * 64.23551 * 18 16 15 20 20 C 1.47007 * 111.00394 * 199.19874 * 19 18 16 21 21 C 1.53090 * 109.26207 * 177.60714 * 20 19 18 22 22 O 1.43019 * 109.25784 * 56.84585 * 21 20 19 23 23 C 1.43014 * 113.73919 * 301.32854 * 22 21 20 24 24 C 1.47015 * 110.99927 * 75.56022 * 19 18 16 25 25 C 1.47435 * 111.00034 * 58.92363 * 13 2 1 26 26 H 1.08996 * 109.46857 * 186.17419 * 1 2 3 27 27 H 1.09000 * 109.46801 * 306.17083 * 1 2 3 28 28 H 1.09002 * 109.47116 * 66.17184 * 1 2 3 29 29 H 1.08997 * 109.47413 * 296.98410 * 4 2 1 30 30 H 1.09006 * 109.47254 * 56.98562 * 4 2 1 31 31 H 0.97002 * 119.99922 * 180.02562 * 8 7 5 32 32 H 1.09006 * 110.35803 * 27.52829 * 14 13 2 33 33 H 1.08994 * 110.41753 * 265.16628 * 14 13 2 34 34 H 1.09003 * 110.99062 * 204.87239 * 15 14 13 35 35 H 1.09004 * 110.98626 * 81.09437 * 15 14 13 36 36 H 1.08997 * 109.46864 * 184.23455 * 18 16 15 37 37 H 1.08994 * 109.47016 * 304.23123 * 18 16 15 38 38 H 1.09000 * 109.50551 * 297.54279 * 20 19 18 39 39 H 1.08996 * 109.50645 * 57.66683 * 20 19 18 40 40 H 1.09001 * 109.50701 * 296.91128 * 21 20 19 41 41 H 1.08999 * 109.50801 * 176.78222 * 21 20 19 42 42 H 1.09000 * 109.51138 * 298.73770 * 23 22 21 43 43 H 1.09000 * 109.50607 * 178.60026 * 23 22 21 44 44 H 1.08998 * 109.50889 * 302.32870 * 24 19 18 45 45 H 1.09000 * 109.50868 * 62.41757 * 24 19 18 46 46 H 1.09002 * 109.88495 * 117.33559 * 25 13 2 47 47 H 1.09001 * 109.88977 * 356.15292 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5451 -0.6569 -1.2874 6 1 4.0881 -0.2219 -0.4612 7 6 4.2291 -1.1532 -2.3766 8 7 3.5679 -1.6825 -3.3829 9 14 6.0948 -1.0740 -2.4235 10 1 6.6515 -1.8323 -1.2744 11 1 6.5839 -1.6699 -3.6927 12 1 6.5323 0.3427 -2.3403 13 7 2.0197 -0.6926 1.1994 14 6 1.5846 0.0044 2.4290 15 6 1.3634 -1.1251 3.4659 16 6 0.7702 -2.2527 2.5808 17 1 -0.3007 -2.1078 2.4385 18 6 1.0554 -3.6262 3.1914 19 7 0.3654 -3.7408 4.4831 20 6 0.9524 -4.8121 5.3009 21 6 0.2448 -4.8572 6.6577 22 8 -1.1586 -5.0403 6.4519 23 6 -1.7631 -4.0143 5.6600 24 6 -1.0757 -3.9608 4.2930 25 6 1.5260 -2.0810 1.2464 26 1 -0.3633 -1.0217 0.1105 27 1 -0.3633 0.6065 0.8296 28 1 -0.3633 0.4152 -0.9401 29 1 1.7215 -1.7633 -1.2227 30 1 1.6332 -0.2396 -2.1385 31 1 4.0492 -2.0321 -4.1491 32 1 0.6539 0.5430 2.2504 33 1 2.3601 0.6887 2.7729 34 1 0.6534 -0.8169 4.2335 35 1 2.3080 -1.4354 3.9126 36 1 0.6971 -4.4047 2.5178 37 1 2.1288 -3.7414 3.3413 38 1 0.8266 -5.7683 4.7929 39 1 2.0141 -4.6157 5.4504 40 1 0.4157 -3.9207 7.1886 41 1 0.6377 -5.6866 7.2458 42 1 -1.6506 -3.0532 6.1618 43 1 -2.8223 -4.2341 5.5264 44 1 -1.4946 -3.1428 3.7068 45 1 -1.2340 -4.9029 3.7682 46 1 2.3657 -2.7748 1.2039 47 1 0.8497 -2.2626 0.4111 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351335310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:20 Heat of formation + Delta-G solvation = -37.609014 kcal Electronic energy + Delta-G solvation = -23409.560841 eV Core-core repulsion = 20206.095877 eV Total energy + Delta-G solvation = -3203.464964 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.91254 -38.92569 -36.15817 -33.93528 -32.18764 -31.41484 -30.10624 -28.23095 -27.39768 -27.12456 -24.26062 -23.83029 -23.13564 -21.20480 -20.72611 -19.86155 -18.48588 -16.87571 -16.36322 -16.12952 -16.02641 -15.30247 -15.23339 -15.07736 -14.45024 -14.21680 -13.90491 -13.57421 -13.46568 -13.01207 -12.69374 -12.30166 -12.12225 -11.82621 -11.72195 -11.61979 -11.45411 -11.30966 -11.13328 -10.92981 -10.84893 -10.69139 -10.60726 -10.48873 -10.37391 -10.18907 -9.82729 -9.81768 -9.11489 -8.99424 -8.52207 -8.23525 -7.39535 -5.86887 -3.84665 3.42226 3.45634 3.49659 3.52175 3.68408 4.57697 4.62738 4.71337 4.75138 4.77060 4.91243 4.94793 5.06327 5.10921 5.24216 5.29784 5.39226 5.48606 5.52629 5.55103 5.58639 5.62576 5.69421 5.77471 5.79570 5.91391 5.94522 5.99697 6.06876 6.12261 6.27015 6.41125 6.53938 6.56230 6.68312 6.74176 6.79192 6.84378 6.90473 7.01394 7.57862 7.73157 7.89190 8.06116 8.15494 8.61782 9.22487 9.77253 11.25122 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024189 B = 0.003664 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.273416 B = 7639.225248 C = 8101.667099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.079 3.921 3 H 0.069 0.931 4 C 0.029 3.971 5 C -0.491 4.491 6 H 0.062 0.938 7 C 0.050 3.950 8 N -0.905 5.905 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.291 1.291 12 H -0.279 1.279 13 N -0.500 5.500 14 C 0.031 3.969 15 C -0.103 4.103 16 C -0.104 4.104 17 H 0.067 0.933 18 C 0.067 3.933 19 N -0.533 5.533 20 C 0.017 3.983 21 C 0.064 3.936 22 O -0.389 6.389 23 C 0.064 3.936 24 C 0.016 3.984 25 C 0.055 3.945 26 H 0.051 0.949 27 H 0.042 0.958 28 H 0.055 0.945 29 H 0.014 0.986 30 H 0.021 0.979 31 H 0.257 0.743 32 H 0.041 0.959 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.037 0.963 37 H 0.079 0.921 38 H 0.041 0.959 39 H 0.087 0.913 40 H 0.059 0.941 41 H 0.096 0.904 42 H 0.059 0.941 43 H 0.095 0.905 44 H 0.087 0.913 45 H 0.041 0.959 46 H 0.072 0.928 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.553 -4.066 18.200 20.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.029 4.029 3 H 0.088 0.912 4 C -0.008 4.008 5 C -0.530 4.530 6 H 0.080 0.920 7 C -0.149 4.149 8 N -0.546 5.546 9 Si 0.719 3.281 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.205 1.205 13 N -0.223 5.223 14 C -0.097 4.097 15 C -0.141 4.141 16 C -0.124 4.124 17 H 0.085 0.915 18 C -0.061 4.061 19 N -0.258 5.258 20 C -0.111 4.111 21 C -0.013 4.013 22 O -0.307 6.307 23 C -0.013 4.013 24 C -0.112 4.112 25 C -0.074 4.074 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.032 0.968 30 H 0.039 0.961 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.056 0.944 37 H 0.097 0.903 38 H 0.059 0.941 39 H 0.105 0.895 40 H 0.077 0.923 41 H 0.114 0.886 42 H 0.077 0.923 43 H 0.113 0.887 44 H 0.105 0.895 45 H 0.060 0.940 46 H 0.091 0.909 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.004 -3.854 18.313 20.768 hybrid contribution 0.204 -0.540 -0.807 0.992 sum -8.800 -4.394 17.506 20.080 Atomic orbital electron populations 1.22557 0.99914 1.00954 1.00872 1.22040 0.89910 0.98635 0.92322 0.91245 1.19213 0.96457 0.95034 0.90056 1.21180 0.91599 1.37580 1.02605 0.91963 1.25018 0.98015 0.96006 0.95894 1.69961 1.35212 1.41590 1.07873 0.86687 0.86407 0.78145 0.76871 1.20398 1.21700 1.20473 1.63732 1.56767 1.00843 1.00993 1.23162 0.98709 0.96827 0.91021 1.22519 1.00525 0.94440 0.96665 1.22416 0.99594 0.94247 0.96104 0.91491 1.22144 0.98936 0.96695 0.88287 1.62198 1.02499 1.44084 1.17054 1.22790 0.99969 0.93437 0.94947 1.22659 0.80974 1.02045 0.95577 1.87970 1.22019 1.48740 1.71986 1.22661 0.96875 0.91600 0.90118 1.22818 0.89230 1.01176 0.97980 1.22749 0.97943 0.92051 0.94649 0.93049 0.93940 0.92564 0.96760 0.96110 0.93312 0.94047 0.91228 0.91685 0.91228 0.94430 0.90261 0.94080 0.89508 0.92260 0.88635 0.92278 0.88651 0.89509 0.94049 0.90926 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.18 8.60 37.16 0.32 -2.86 16 2 C 0.08 1.63 2.33 -67.71 -0.16 1.47 16 3 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 4 C 0.03 0.75 4.28 -27.88 -0.12 0.63 16 5 C -0.49 -13.89 8.80 -34.45 -0.30 -14.19 16 6 H 0.06 1.77 7.69 -52.48 -0.40 1.36 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.35 16 8 N -0.91 -27.46 13.29 55.43 0.74 -26.72 16 9 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 13 N -0.50 -9.54 4.81 -223.25 -1.07 -10.62 16 14 C 0.03 0.48 6.50 -2.27 -0.01 0.46 16 15 C -0.10 -1.38 6.29 -24.59 -0.15 -1.53 16 16 C -0.10 -1.40 2.97 -88.80 -0.26 -1.67 16 17 H 0.07 0.89 6.94 -51.93 -0.36 0.53 16 18 C 0.07 0.82 4.30 -3.82 -0.02 0.80 16 19 N -0.53 -5.78 4.42 -234.32 -1.04 -6.82 16 20 C 0.02 0.16 5.60 -3.72 -0.02 0.14 16 21 C 0.06 0.57 7.01 37.20 0.26 0.83 16 22 O -0.39 -4.18 10.83 -35.23 -0.38 -4.56 16 23 C 0.06 0.59 7.01 37.21 0.26 0.85 16 24 C 0.02 0.16 5.47 -3.71 -0.02 0.14 16 25 C 0.05 0.95 5.06 -2.84 -0.01 0.94 16 26 H 0.05 0.87 6.10 -51.93 -0.32 0.55 16 27 H 0.04 0.65 6.32 -51.93 -0.33 0.32 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.01 0.38 6.49 -51.93 -0.34 0.05 16 30 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.04 0.62 5.75 -51.93 -0.30 0.32 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.96 8.04 -51.93 -0.42 0.54 16 36 H 0.04 0.47 7.99 -51.93 -0.42 0.05 16 37 H 0.08 0.99 7.86 -51.93 -0.41 0.58 16 38 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.09 0.77 8.02 -51.93 -0.42 0.35 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.09 0.85 6.83 -51.93 -0.35 0.49 16 45 H 0.04 0.44 8.13 -51.93 -0.42 0.02 16 46 H 0.07 1.38 7.82 -51.93 -0.41 0.97 16 47 H 0.06 1.12 4.80 -51.93 -0.25 0.87 16 LS Contribution 352.40 15.07 5.31 5.31 Total: -1.00 -30.65 352.40 -10.30 -40.96 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -8.50 Total: -2.13 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: -0.34 Total: -12.62 kcal Atomic # 7 Polarization: -42.78 SS G_CDS: -1.37 Total: -44.15 kcal Atomic # 8 Polarization: -4.18 SS G_CDS: -0.38 Total: -4.56 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.65 -10.30 -40.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351335310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.347 kcal (2) G-P(sol) polarization free energy of solvation -30.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds