Wall clock time and date at job start Tue Mar 31 2020 05:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47335 * 2 1 4 4 C 1.53000 * 109.46928 * 239.99930 * 2 1 3 5 5 C 1.50696 * 109.47456 * 176.98060 * 4 2 1 6 6 H 1.08008 * 119.99823 * 4.88452 * 5 4 2 7 7 C 1.37869 * 120.00674 * 184.88135 * 5 4 2 8 8 N 1.31521 * 119.99796 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00575 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47164 * 59.99771 * 9 7 5 11 11 H 1.48494 * 109.47314 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46845 * 300.00177 * 9 7 5 13 13 N 1.46904 * 109.47176 * 120.00436 * 2 1 3 14 14 C 1.47888 * 111.01121 * 298.04392 * 13 2 1 15 15 C 1.54913 * 104.76983 * 146.32991 * 14 13 2 16 16 C 1.55137 * 101.68908 * 322.98440 * 15 14 13 17 17 H 1.09003 * 110.70198 * 277.25091 * 16 15 14 18 18 C 1.53000 * 110.70478 * 154.01812 * 16 15 14 19 19 N 1.46900 * 109.47488 * 64.23551 * 18 16 15 20 20 C 1.47007 * 111.00394 * 199.19874 * 19 18 16 21 21 C 1.53090 * 109.26207 * 177.60714 * 20 19 18 22 22 O 1.43019 * 109.25784 * 56.84585 * 21 20 19 23 23 C 1.43014 * 113.73919 * 301.32854 * 22 21 20 24 24 C 1.47015 * 110.99927 * 75.56022 * 19 18 16 25 25 C 1.47435 * 111.00034 * 58.92363 * 13 2 1 26 26 H 1.08996 * 109.46857 * 186.17419 * 1 2 3 27 27 H 1.09000 * 109.46801 * 306.17083 * 1 2 3 28 28 H 1.09002 * 109.47116 * 66.17184 * 1 2 3 29 29 H 1.08997 * 109.47413 * 296.98410 * 4 2 1 30 30 H 1.09006 * 109.47254 * 56.98562 * 4 2 1 31 31 H 0.97002 * 119.99922 * 180.02562 * 8 7 5 32 32 H 1.09006 * 110.35803 * 27.52829 * 14 13 2 33 33 H 1.08994 * 110.41753 * 265.16628 * 14 13 2 34 34 H 1.09003 * 110.99062 * 204.87239 * 15 14 13 35 35 H 1.09004 * 110.98626 * 81.09437 * 15 14 13 36 36 H 1.08997 * 109.46864 * 184.23455 * 18 16 15 37 37 H 1.08994 * 109.47016 * 304.23123 * 18 16 15 38 38 H 1.09000 * 109.50551 * 297.54279 * 20 19 18 39 39 H 1.08996 * 109.50645 * 57.66683 * 20 19 18 40 40 H 1.09001 * 109.50701 * 296.91128 * 21 20 19 41 41 H 1.08999 * 109.50801 * 176.78222 * 21 20 19 42 42 H 1.09000 * 109.51138 * 298.73770 * 23 22 21 43 43 H 1.09000 * 109.50607 * 178.60026 * 23 22 21 44 44 H 1.08998 * 109.50889 * 302.32870 * 24 19 18 45 45 H 1.09000 * 109.50868 * 62.41757 * 24 19 18 46 46 H 1.09002 * 109.88495 * 117.33559 * 25 13 2 47 47 H 1.09001 * 109.88977 * 356.15292 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5451 -0.6569 -1.2874 6 1 4.0881 -0.2219 -0.4612 7 6 4.2291 -1.1532 -2.3766 8 7 3.5679 -1.6825 -3.3829 9 14 6.0948 -1.0740 -2.4235 10 1 6.6515 -1.8323 -1.2744 11 1 6.5839 -1.6699 -3.6927 12 1 6.5323 0.3427 -2.3403 13 7 2.0197 -0.6926 1.1994 14 6 1.5846 0.0044 2.4290 15 6 1.3634 -1.1251 3.4659 16 6 0.7702 -2.2527 2.5808 17 1 -0.3007 -2.1078 2.4385 18 6 1.0554 -3.6262 3.1914 19 7 0.3654 -3.7408 4.4831 20 6 0.9524 -4.8121 5.3009 21 6 0.2448 -4.8572 6.6577 22 8 -1.1586 -5.0403 6.4519 23 6 -1.7631 -4.0143 5.6600 24 6 -1.0757 -3.9608 4.2930 25 6 1.5260 -2.0810 1.2464 26 1 -0.3633 -1.0217 0.1105 27 1 -0.3633 0.6065 0.8296 28 1 -0.3633 0.4152 -0.9401 29 1 1.7215 -1.7633 -1.2227 30 1 1.6332 -0.2396 -2.1385 31 1 4.0492 -2.0321 -4.1491 32 1 0.6539 0.5430 2.2504 33 1 2.3601 0.6887 2.7729 34 1 0.6534 -0.8169 4.2335 35 1 2.3080 -1.4354 3.9126 36 1 0.6971 -4.4047 2.5178 37 1 2.1288 -3.7414 3.3413 38 1 0.8266 -5.7683 4.7929 39 1 2.0141 -4.6157 5.4504 40 1 0.4157 -3.9207 7.1886 41 1 0.6377 -5.6866 7.2458 42 1 -1.6506 -3.0532 6.1618 43 1 -2.8223 -4.2341 5.5264 44 1 -1.4946 -3.1428 3.7068 45 1 -1.2340 -4.9029 3.7682 46 1 2.3657 -2.7748 1.2039 47 1 0.8497 -2.2626 0.4111 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351335310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:19 Heat of formation + Delta-G solvation = -58.505788 kcal Electronic energy + Delta-G solvation = -23410.466993 eV Core-core repulsion = 20206.095877 eV Total energy + Delta-G solvation = -3204.371116 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.89148 -40.09216 -37.17079 -35.53484 -34.06364 -32.14711 -31.36938 -29.58391 -29.22066 -28.19954 -25.20802 -24.99946 -24.78166 -22.65975 -21.57950 -20.92944 -20.05911 -18.35926 -17.87161 -17.21098 -17.05529 -16.52123 -16.19393 -16.11206 -15.93346 -15.28091 -15.06063 -14.93845 -14.62261 -14.38266 -14.14070 -13.66645 -13.41189 -13.26455 -13.16930 -12.86271 -12.70105 -12.62607 -12.52672 -12.33925 -12.29559 -12.17269 -11.87637 -11.76774 -11.61306 -11.50108 -11.27025 -11.12122 -10.99314 -10.62187 -10.47459 -9.39006 -8.85930 -8.10428 -6.15652 1.41234 1.44052 1.51701 2.47107 2.69753 2.97915 3.20222 3.33548 3.73629 3.83261 3.93761 3.96006 4.06224 4.20854 4.23045 4.25744 4.33612 4.42701 4.46117 4.52100 4.57158 4.58806 4.64069 4.69819 4.74736 4.82753 4.83726 4.85859 4.92169 5.00737 5.03372 5.14310 5.18161 5.21649 5.26026 5.31100 5.47760 5.50440 5.73048 5.89971 5.94006 5.98128 6.19438 6.33890 6.41366 6.57499 6.98933 7.50613 9.01359 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024189 B = 0.003664 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.273416 B = 7639.225248 C = 8101.667099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.088 3.912 3 H 0.061 0.939 4 C 0.037 3.963 5 C -0.503 4.503 6 H 0.058 0.942 7 C -0.005 4.005 8 N -0.941 5.941 9 Si 0.957 3.043 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.270 1.270 13 N -0.525 5.525 14 C 0.031 3.969 15 C -0.090 4.090 16 C -0.088 4.088 17 H 0.076 0.924 18 C 0.074 3.926 19 N -0.534 5.534 20 C 0.016 3.984 21 C 0.065 3.935 22 O -0.407 6.407 23 C 0.065 3.935 24 C 0.016 3.984 25 C 0.057 3.943 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.053 0.947 29 H -0.007 1.007 30 H -0.008 1.008 31 H 0.259 0.741 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.066 0.934 36 H 0.030 0.970 37 H 0.074 0.926 38 H 0.033 0.967 39 H 0.095 0.905 40 H 0.064 0.936 41 H 0.113 0.887 42 H 0.064 0.936 43 H 0.111 0.889 44 H 0.091 0.909 45 H 0.032 0.968 46 H 0.049 0.951 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.754 -3.653 20.412 22.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.021 4.021 3 H 0.079 0.921 4 C -0.001 4.001 5 C -0.541 4.541 6 H 0.077 0.923 7 C -0.201 4.201 8 N -0.583 5.583 9 Si 0.783 3.217 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.195 1.195 13 N -0.249 5.249 14 C -0.096 4.096 15 C -0.128 4.128 16 C -0.108 4.108 17 H 0.094 0.906 18 C -0.054 4.054 19 N -0.259 5.259 20 C -0.112 4.112 21 C -0.012 4.012 22 O -0.326 6.326 23 C -0.011 4.011 24 C -0.112 4.112 25 C -0.071 4.071 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.011 0.989 30 H 0.010 0.990 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.085 0.915 36 H 0.048 0.952 37 H 0.093 0.907 38 H 0.051 0.949 39 H 0.113 0.887 40 H 0.082 0.918 41 H 0.131 0.869 42 H 0.083 0.917 43 H 0.129 0.871 44 H 0.109 0.891 45 H 0.050 0.950 46 H 0.067 0.933 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.210 -3.434 20.547 22.777 hybrid contribution 0.264 -0.679 -1.503 1.670 sum -8.946 -4.112 19.044 21.439 Atomic orbital electron populations 1.22409 0.97143 1.01662 1.01929 1.21714 0.92089 0.97290 0.90974 0.92067 1.19061 0.95309 0.94041 0.91645 1.21494 0.93096 1.37109 1.02393 0.92336 1.25871 1.02985 0.95684 0.95575 1.70093 1.37116 1.42586 1.08516 0.85621 0.80503 0.78555 0.77034 1.19722 1.21250 1.19470 1.63580 1.57935 1.01661 1.01711 1.23228 0.99201 0.97368 0.89828 1.22439 1.00903 0.93148 0.96286 1.22248 0.99404 0.95280 0.93862 0.90555 1.21985 0.98850 0.95602 0.88992 1.62195 1.02932 1.44714 1.16016 1.22853 1.00573 0.92640 0.95149 1.22768 0.80169 1.03102 0.95125 1.87951 1.22918 1.49492 1.72203 1.22755 0.97545 0.91602 0.89237 1.22866 0.88775 1.00874 0.98731 1.22630 0.97097 0.90958 0.96454 0.92876 0.91135 0.92824 0.98906 0.98999 0.93268 0.92854 0.91108 0.89487 0.91535 0.95174 0.90735 0.94861 0.88719 0.91766 0.86915 0.91734 0.87073 0.89061 0.94965 0.93273 0.93996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.79 8.60 71.98 0.62 -5.17 16 2 C 0.09 3.64 2.33 44.92 0.10 3.75 16 3 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 4 C 0.04 1.94 4.28 29.85 0.13 2.07 16 5 C -0.50 -29.06 8.80 25.60 0.23 -28.83 16 6 H 0.06 3.36 7.69 -2.91 -0.02 3.34 16 7 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 8 N -0.94 -58.43 13.29 21.45 0.28 -58.14 16 9 Si 0.96 46.00 29.54 68.60 2.03 48.02 16 10 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 12 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 13 N -0.53 -19.88 4.81 -860.24 -4.14 -24.02 16 14 C 0.03 0.90 6.50 86.77 0.56 1.46 16 15 C -0.09 -2.17 6.29 31.98 0.20 -1.97 16 16 C -0.09 -2.25 2.97 -9.62 -0.03 -2.28 16 17 H 0.08 1.85 6.94 -2.39 -0.02 1.84 16 18 C 0.07 1.72 4.30 86.30 0.37 2.09 16 19 N -0.53 -10.57 4.42 -895.26 -3.96 -14.53 16 20 C 0.02 0.28 5.60 86.31 0.48 0.76 16 21 C 0.07 1.01 7.01 72.01 0.50 1.52 16 22 O -0.41 -7.90 10.83 -148.98 -1.61 -9.52 16 23 C 0.07 1.04 7.01 72.02 0.50 1.55 16 24 C 0.02 0.29 5.47 86.32 0.47 0.76 16 25 C 0.06 2.02 5.06 86.65 0.44 2.45 16 26 H 0.05 1.75 6.10 -2.39 -0.01 1.74 16 27 H 0.07 1.97 6.32 -2.39 -0.02 1.95 16 28 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 29 H -0.01 -0.41 6.49 -2.39 -0.02 -0.43 16 30 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 31 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 32 H 0.05 1.43 5.75 -2.38 -0.01 1.42 16 33 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.07 1.67 8.04 -2.39 -0.02 1.65 16 36 H 0.03 0.74 7.99 -2.39 -0.02 0.72 16 37 H 0.07 1.81 7.86 -2.39 -0.02 1.79 16 38 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.09 1.50 8.02 -2.39 -0.02 1.48 16 40 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.09 1.57 6.83 -2.39 -0.02 1.55 16 45 H 0.03 0.65 8.13 -2.39 -0.02 0.63 16 46 H 0.05 1.93 7.82 -2.39 -0.02 1.91 16 47 H 0.04 1.61 4.80 -2.39 -0.01 1.60 16 Total: -1.00 -66.52 352.40 -1.43 -67.95 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 0.92 Total: 11.92 kcal Atomic # 6 Polarization: -26.74 SS G_CDS: 5.05 Total: -21.69 kcal Atomic # 7 Polarization: -88.88 SS G_CDS: -7.81 Total: -96.69 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: -1.61 Total: -9.52 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.02 kcal Total: -66.52 -1.43 -67.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351335310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.445 kcal (2) G-P(sol) polarization free energy of solvation -66.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds