Wall clock time and date at job start Tue Mar 31 2020 05:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47008 * 2 1 4 4 C 1.53000 * 109.47261 * 240.00464 * 2 1 3 5 5 C 1.50693 * 109.47314 * 174.99805 * 4 2 1 6 6 H 1.08006 * 120.00192 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00069 * 179.97438 * 5 4 2 8 8 N 1.31520 * 120.00011 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00157 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47120 * 59.99647 * 9 7 5 11 11 H 1.48502 * 109.47197 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46861 * 299.99542 * 9 7 5 13 13 N 1.46899 * 109.47332 * 119.99709 * 2 1 3 14 14 C 1.46954 * 111.00194 * 300.00217 * 13 2 1 15 15 C 1.53051 * 109.36231 * 183.18443 * 14 13 2 16 16 N 1.46954 * 109.36779 * 301.60067 * 15 14 13 17 17 C 1.46899 * 111.00127 * 183.18787 * 16 15 14 18 18 C 1.53179 * 109.54381 * 60.17787 * 17 16 15 19 19 C 1.53280 * 109.06328 * 176.85289 * 18 17 16 20 20 O 1.42901 * 109.46155 * 302.44168 * 19 18 17 21 21 C 1.42903 * 114.09356 * 61.15994 * 20 19 18 22 22 C 1.53091 * 109.41633 * 298.84001 * 21 20 19 23 23 C 1.46954 * 110.88135 * 59.32050 * 16 15 14 24 24 C 1.46962 * 110.99667 * 63.80493 * 13 2 1 25 25 H 1.09004 * 109.47008 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47351 * 299.99671 * 1 2 3 27 27 H 1.08999 * 109.47532 * 59.99798 * 1 2 3 28 28 H 1.09006 * 109.46676 * 294.99781 * 4 2 1 29 29 H 1.09006 * 109.47355 * 54.99173 * 4 2 1 30 30 H 0.96998 * 120.00078 * 179.97438 * 8 7 5 31 31 H 1.09002 * 109.48771 * 63.22334 * 14 13 2 32 32 H 1.08997 * 109.50537 * 303.16190 * 14 13 2 33 33 H 1.09003 * 109.48841 * 181.62999 * 15 14 13 34 34 H 1.09001 * 109.48962 * 61.56672 * 15 14 13 35 35 H 1.09002 * 109.54251 * 299.99916 * 17 16 15 36 36 H 1.09006 * 109.52033 * 296.84393 * 18 17 16 37 37 H 1.09002 * 109.52377 * 57.02462 * 18 17 16 38 38 H 1.09007 * 109.45633 * 182.44534 * 19 18 17 39 39 H 1.09003 * 109.46692 * 62.44798 * 19 18 17 40 40 H 1.09000 * 109.47917 * 178.85973 * 21 20 19 41 41 H 1.09000 * 109.49157 * 58.82974 * 21 20 19 42 42 H 1.09004 * 109.52607 * 297.70481 * 22 21 20 43 43 H 1.08999 * 109.57497 * 177.54830 * 22 21 20 44 44 H 1.09002 * 109.49232 * 60.64650 * 23 16 15 45 45 H 1.08997 * 109.48911 * 180.71702 * 23 16 15 46 46 H 1.09001 * 109.48478 * 296.77683 * 24 13 2 47 47 H 1.08996 * 109.48920 * 56.81960 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5418 -0.6148 -1.3128 6 1 4.0789 -0.0853 -0.5396 7 6 4.2304 -1.1933 -2.3579 8 7 3.5764 -1.8384 -3.2991 9 14 6.0921 -1.0621 -2.4362 10 1 6.6838 -1.6880 -1.2266 11 1 6.5871 -1.7619 -3.6489 12 1 6.4854 0.3687 -2.4960 13 7 2.0197 -0.6924 1.1994 14 6 1.5485 -0.0261 2.4215 15 6 2.1436 -0.7286 3.6442 16 7 1.7481 -2.1438 3.6335 17 6 2.2378 -2.8363 4.8329 18 6 1.6480 -2.1757 6.0828 19 6 2.1025 -2.9544 7.3224 20 8 1.6940 -4.3186 7.2040 21 6 2.2524 -4.9992 6.0784 22 6 1.8040 -4.3048 4.7898 23 6 2.2193 -2.8102 2.4115 24 6 1.6242 -2.1078 1.1888 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.7516 -1.7715 -1.2056 29 1 1.6053 -0.2617 -2.1371 30 1 4.0608 -2.2451 -4.0346 31 1 0.4606 -0.0765 2.4669 32 1 1.8642 1.0172 2.4120 33 1 1.7725 -0.2541 4.5526 34 1 3.2306 -0.6545 3.6129 35 1 3.3257 -2.7784 4.8688 36 1 1.9970 -1.1451 6.1491 37 1 0.5598 -2.1896 6.0230 38 1 1.6512 -2.5157 8.2124 39 1 3.1884 -2.9059 7.4039 40 1 1.9091 -6.0337 6.0721 41 1 3.3403 -4.9777 6.1433 42 1 0.7188 -4.3616 4.7040 43 1 2.2634 -4.7953 3.9317 44 1 3.3072 -2.7598 2.3661 45 1 1.9033 -3.8533 2.4211 46 1 0.5372 -2.1818 1.2201 47 1 1.9950 -2.5821 0.2802 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351412093.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:27 Heat of formation + Delta-G solvation = -38.233554 kcal Electronic energy + Delta-G solvation = -23758.062929 eV Core-core repulsion = 20554.570883 eV Total energy + Delta-G solvation = -3203.492046 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.02167 -38.65719 -36.30881 -33.24828 -32.13894 -31.63579 -30.38605 -29.86390 -27.32680 -25.89788 -24.37163 -23.53209 -22.89731 -22.27449 -20.37964 -19.93201 -18.49051 -16.85067 -16.19903 -16.14253 -15.58344 -15.11409 -15.02545 -14.78811 -14.52791 -14.16914 -13.92580 -13.48852 -13.38304 -13.33276 -12.93679 -12.65364 -12.13143 -11.79987 -11.66607 -11.55216 -11.45919 -11.36602 -11.22461 -11.05338 -10.78035 -10.61424 -10.47387 -10.37910 -10.30676 -10.14710 -9.82057 -9.74816 -9.11693 -8.99731 -8.26916 -8.19745 -7.43414 -5.90513 -3.88695 3.38805 3.42788 3.46249 3.65927 3.92543 4.52673 4.53663 4.58677 4.73103 4.81866 5.02447 5.03571 5.14900 5.29496 5.36894 5.41879 5.46005 5.48150 5.49564 5.57967 5.65752 5.74566 5.80410 5.84197 5.86722 5.91409 5.95046 6.02237 6.04440 6.14937 6.15821 6.28038 6.43047 6.51056 6.67583 6.75444 6.98175 6.98625 7.19070 7.23608 7.55646 7.70742 7.92935 8.02947 8.11995 8.56465 9.17469 9.73256 11.21271 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020695 B = 0.004197 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.650544 B = 6670.176206 C = 7305.799850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.087 3.913 3 H 0.069 0.931 4 C 0.027 3.973 5 C -0.492 4.492 6 H 0.059 0.941 7 C 0.052 3.948 8 N -0.903 5.903 9 Si 0.889 3.111 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.279 1.279 13 N -0.513 5.513 14 C 0.053 3.947 15 C 0.058 3.942 16 N -0.533 5.533 17 C 0.084 3.916 18 C -0.148 4.148 19 C 0.063 3.937 20 O -0.384 6.384 21 C 0.063 3.937 22 C -0.151 4.151 23 C 0.056 3.944 24 C 0.058 3.942 25 H 0.051 0.949 26 H 0.042 0.958 27 H 0.054 0.946 28 H 0.021 0.979 29 H 0.018 0.982 30 H 0.258 0.742 31 H 0.036 0.964 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.039 0.961 35 H 0.039 0.961 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.048 0.952 40 H 0.095 0.905 41 H 0.048 0.952 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.042 0.958 45 H 0.074 0.926 46 H 0.031 0.969 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.472 -2.303 18.485 19.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.021 4.021 3 H 0.087 0.913 4 C -0.010 4.010 5 C -0.531 4.531 6 H 0.078 0.922 7 C -0.148 4.148 8 N -0.544 5.544 9 Si 0.718 3.282 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.205 1.205 13 N -0.237 5.237 14 C -0.075 4.075 15 C -0.070 4.070 16 N -0.259 5.259 17 C -0.025 4.025 18 C -0.186 4.186 19 C -0.015 4.015 20 O -0.303 6.303 21 C -0.014 4.014 22 C -0.189 4.189 23 C -0.071 4.071 24 C -0.070 4.070 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.039 0.961 29 H 0.037 0.963 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.112 0.888 39 H 0.066 0.934 40 H 0.113 0.887 41 H 0.067 0.933 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.060 0.940 45 H 0.093 0.907 46 H 0.049 0.951 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.552 -2.480 18.434 19.149 hybrid contribution 1.260 0.229 -0.430 1.351 sum -3.292 -2.251 18.004 18.441 Atomic orbital electron populations 1.22505 0.99752 1.01278 1.00650 1.21893 0.90088 0.98445 0.91704 0.91282 1.19259 0.96329 0.95391 0.90002 1.21141 0.91798 1.33103 1.07056 0.92236 1.24998 0.97943 0.95859 0.95960 1.69953 1.35307 1.36804 1.12339 0.86705 0.86434 0.78031 0.77042 1.20486 1.21624 1.20488 1.62287 1.58789 1.01626 1.00973 1.22134 0.97523 0.97664 0.90219 1.22173 0.98490 0.88289 0.98053 1.62247 1.59728 1.02343 1.01533 1.21591 0.96627 0.93697 0.90537 1.22321 1.02709 0.99566 0.94031 1.22609 0.98811 0.82104 0.97930 1.87915 1.71682 1.23866 1.46854 1.22588 0.97356 0.96301 0.85180 1.22317 1.03243 0.95042 0.98282 1.22249 0.98359 0.97625 0.88914 1.22180 0.97285 0.89659 0.97894 0.93024 0.93941 0.92672 0.96114 0.96350 0.93241 0.94593 0.91132 0.90974 0.94270 0.94328 0.90828 0.90148 0.88838 0.93400 0.88729 0.93346 0.90097 0.90502 0.93986 0.90730 0.95077 0.88395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.20 8.50 37.16 0.32 -2.89 16 2 C 0.09 1.77 2.37 -67.71 -0.16 1.61 16 3 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 4 C 0.03 0.68 4.14 -27.89 -0.12 0.57 16 5 C -0.49 -13.68 8.84 -34.44 -0.30 -13.98 16 6 H 0.06 1.66 7.74 -52.48 -0.41 1.26 16 7 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 8 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 9 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 N -0.51 -9.75 4.45 -226.49 -1.01 -10.76 16 14 C 0.05 0.84 5.13 -3.77 -0.02 0.82 16 15 C 0.06 0.81 5.32 -3.77 -0.02 0.79 16 16 N -0.53 -7.42 4.58 -226.27 -1.04 -8.45 16 17 C 0.08 0.99 2.02 -67.53 -0.14 0.85 16 18 C -0.15 -1.50 5.12 -26.49 -0.14 -1.63 16 19 C 0.06 0.58 6.85 37.30 0.26 0.83 16 20 O -0.38 -4.26 10.77 -35.23 -0.38 -4.64 16 21 C 0.06 0.60 6.84 37.20 0.25 0.86 16 22 C -0.15 -1.62 4.97 -26.59 -0.13 -1.75 16 23 C 0.06 0.88 5.24 -3.77 -0.02 0.86 16 24 C 0.06 1.06 4.84 -3.76 -0.02 1.04 16 25 H 0.05 0.91 6.56 -51.93 -0.34 0.57 16 26 H 0.04 0.66 6.48 -51.93 -0.34 0.33 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.02 0.55 6.00 -51.93 -0.31 0.24 16 29 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.04 0.57 6.48 -51.93 -0.34 0.23 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 0.86 6.22 -51.93 -0.32 0.53 16 34 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.69 6.53 -51.93 -0.34 0.35 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.09 0.71 8.14 -51.92 -0.42 0.29 16 39 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.08 0.81 6.47 -51.93 -0.34 0.48 16 44 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.07 1.05 6.14 -51.93 -0.32 0.73 16 46 H 0.03 0.56 6.56 -51.93 -0.34 0.22 16 47 H 0.10 2.08 5.95 -51.93 -0.31 1.77 16 LS Contribution 344.86 15.07 5.20 5.20 Total: -1.00 -29.86 344.86 -10.17 -40.04 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -8.33 Total: -1.43 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -0.33 Total: -10.64 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: -1.31 Total: -45.46 kcal Atomic # 8 Polarization: -4.26 SS G_CDS: -0.38 Total: -4.64 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.86 -10.17 -40.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351412093.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.802 kcal (2) G-P(sol) polarization free energy of solvation -29.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds