Wall clock time and date at job start Tue Mar 31 2020 05:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47271 * 2 1 4 4 C 1.53005 * 109.46841 * 119.99557 * 2 1 3 5 5 C 1.50700 * 109.46778 * 183.42191 * 4 2 1 6 6 H 1.07997 * 120.00569 * 5.04186 * 5 4 2 7 7 C 1.37883 * 119.99709 * 184.76775 * 5 4 2 8 8 N 1.31511 * 119.99916 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99675 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47466 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46796 * 120.00373 * 9 7 5 12 12 H 1.48501 * 109.47019 * 239.99976 * 9 7 5 13 13 N 1.46892 * 109.47179 * 239.99406 * 2 1 3 14 14 C 1.46960 * 111.00022 * 72.16101 * 13 2 1 15 15 C 1.53043 * 109.36574 * 176.81046 * 14 13 2 16 16 N 1.46961 * 109.36689 * 58.40287 * 15 14 13 17 17 C 1.46904 * 111.00119 * 176.81007 * 16 15 14 18 18 C 1.53175 * 109.54223 * 63.62191 * 17 16 15 19 19 C 1.53101 * 109.15798 * 183.24007 * 18 17 16 20 20 O 1.42907 * 109.48534 * 57.47294 * 19 18 17 21 21 C 1.42903 * 114.09745 * 298.88841 * 20 19 18 22 22 C 1.53092 * 109.41153 * 61.15963 * 21 20 19 23 23 C 1.46959 * 110.87709 * 300.67641 * 16 15 14 24 24 C 1.46951 * 111.00339 * 308.36209 * 13 2 1 25 25 H 1.08998 * 109.47014 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47194 * 300.00606 * 1 2 3 27 27 H 1.08996 * 109.46993 * 60.00071 * 1 2 3 28 28 H 1.08995 * 109.47363 * 63.42609 * 4 2 1 29 29 H 1.09000 * 109.47043 * 303.42267 * 4 2 1 30 30 H 0.97005 * 119.99833 * 180.02562 * 8 7 5 31 31 H 1.09004 * 109.48765 * 296.78178 * 14 13 2 32 32 H 1.09007 * 109.48777 * 56.84280 * 14 13 2 33 33 H 1.08998 * 109.49147 * 298.43330 * 15 14 13 34 34 H 1.09002 * 109.49091 * 178.36991 * 15 14 13 35 35 H 1.08992 * 109.54039 * 183.79787 * 17 16 15 36 36 H 1.09001 * 109.52397 * 303.05926 * 18 17 16 37 37 H 1.09001 * 109.52395 * 63.24380 * 18 17 16 38 38 H 1.09001 * 109.40773 * 297.49431 * 19 18 17 39 39 H 1.09003 * 109.49250 * 177.50839 * 19 18 17 40 40 H 1.08994 * 109.48166 * 301.17452 * 21 20 19 41 41 H 1.09003 * 109.48851 * 181.14457 * 21 20 19 42 42 H 1.09000 * 109.51925 * 182.48396 * 22 21 20 43 43 H 1.08999 * 109.57286 * 62.32862 * 22 21 20 44 44 H 1.09000 * 109.49167 * 299.35709 * 23 16 15 45 45 H 1.08997 * 109.48850 * 179.28622 * 23 16 15 46 46 H 1.09001 * 109.48718 * 303.15237 * 24 13 2 47 47 H 1.08999 * 109.49193 * 63.19736 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5446 -0.6482 1.2925 6 1 4.0786 -0.0700 0.5529 7 6 4.2391 -1.3149 2.2795 8 7 3.5885 -2.0149 3.1830 9 14 6.1041 -1.2237 2.3334 10 1 6.5910 -0.3780 1.2141 11 1 6.5335 -0.6299 3.6250 12 1 6.6704 -2.5905 2.2044 13 7 2.0197 -0.6926 -1.1993 14 6 1.7990 0.1200 -2.4037 15 6 2.3927 -0.5994 -3.6171 16 7 1.7655 -1.9212 -3.7550 17 6 2.2552 -2.6138 -4.9544 18 6 3.7573 -2.8795 -4.8152 19 6 4.2742 -3.5280 -6.1022 20 8 3.9896 -2.6754 -7.2132 21 6 2.5968 -2.4318 -7.4201 22 6 2.0131 -1.7372 -6.1869 23 6 1.9863 -2.7339 -2.5506 24 6 1.3925 -2.0144 -1.3372 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.7276 -1.7650 1.2193 29 1 1.6274 -0.2439 2.1382 30 1 4.0771 -2.4836 3.8776 31 1 0.7290 0.2643 -2.5541 32 1 2.2834 1.0890 -2.2825 33 1 3.4672 -0.7193 -3.4789 34 1 2.2047 -0.0121 -4.5160 35 1 1.7267 -3.5599 -5.0703 36 1 4.2799 -1.9377 -4.6481 37 1 3.9323 -3.5487 -3.9728 38 1 3.7814 -4.4895 -6.2465 39 1 5.3510 -3.6791 -6.0263 40 1 2.0822 -3.3789 -7.5815 41 1 2.4651 -1.7930 -8.2935 42 1 0.9419 -1.5903 -6.3247 43 1 2.4984 -0.7712 -6.0480 44 1 3.0562 -2.8780 -2.4002 45 1 1.5019 -3.7027 -2.6718 46 1 1.5806 -2.6016 -0.4383 47 1 0.3179 -1.8945 -1.4750 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351412096.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:29 Heat of formation + Delta-G solvation = -37.610448 kcal Electronic energy + Delta-G solvation = -23923.394907 eV Core-core repulsion = 20719.929880 eV Total energy + Delta-G solvation = -3203.465026 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.19314 -38.58007 -36.33410 -33.20058 -32.06600 -31.40623 -30.58251 -29.75797 -27.29173 -25.95091 -24.12742 -23.46493 -23.20625 -22.60047 -20.80351 -19.32449 -18.36843 -16.77790 -16.23712 -16.15047 -15.56275 -15.24821 -14.99111 -14.52072 -14.43674 -14.26623 -14.00476 -13.75190 -13.54207 -13.15020 -12.88629 -12.40553 -12.02966 -11.86179 -11.75044 -11.61475 -11.42399 -11.39601 -11.10449 -10.90031 -10.81750 -10.72111 -10.57951 -10.49890 -10.25314 -10.07518 -9.89403 -9.73101 -9.14813 -8.94440 -8.25686 -8.13055 -7.40954 -5.88257 -3.85446 3.37380 3.45026 3.50491 3.69631 3.96766 4.54243 4.57386 4.60498 4.67068 4.84214 5.00306 5.02883 5.15242 5.27076 5.37562 5.42450 5.48599 5.50162 5.52843 5.61831 5.68295 5.73869 5.78727 5.83609 5.87112 5.90293 5.93404 6.00652 6.04073 6.11227 6.21684 6.30443 6.40301 6.49369 6.61379 6.71826 7.01215 7.02016 7.16916 7.22276 7.56497 7.70240 7.93761 8.05220 8.13549 8.59345 9.20109 9.75863 11.23799 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018389 B = 0.004695 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.267802 B = 5961.846187 C = 6942.284791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.087 3.913 3 H 0.067 0.933 4 C 0.030 3.970 5 C -0.486 4.486 6 H 0.059 0.941 7 C 0.051 3.949 8 N -0.904 5.904 9 Si 0.887 3.113 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.287 1.287 13 N -0.510 5.510 14 C 0.055 3.945 15 C 0.054 3.946 16 N -0.531 5.531 17 C 0.085 3.915 18 C -0.192 4.192 19 C 0.066 3.934 20 O -0.385 6.385 21 C 0.063 3.937 22 C -0.151 4.151 23 C 0.056 3.944 24 C 0.059 3.941 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.039 0.961 28 H 0.022 0.978 29 H 0.015 0.985 30 H 0.256 0.744 31 H 0.032 0.968 32 H 0.071 0.929 33 H 0.045 0.955 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.049 0.951 39 H 0.092 0.908 40 H 0.049 0.951 41 H 0.093 0.907 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.048 0.952 45 H 0.070 0.930 46 H 0.089 0.911 47 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.549 -1.383 -18.645 19.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.021 4.021 3 H 0.085 0.915 4 C -0.007 4.007 5 C -0.524 4.524 6 H 0.077 0.923 7 C -0.148 4.148 8 N -0.545 5.545 9 Si 0.716 3.284 10 H -0.199 1.199 11 H -0.214 1.214 12 H -0.214 1.214 13 N -0.234 5.234 14 C -0.074 4.074 15 C -0.074 4.074 16 N -0.254 5.254 17 C -0.024 4.024 18 C -0.232 4.232 19 C -0.011 4.011 20 O -0.304 6.304 21 C -0.015 4.015 22 C -0.189 4.189 23 C -0.072 4.072 24 C -0.069 4.069 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.040 0.960 29 H 0.033 0.967 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.067 0.933 39 H 0.110 0.890 40 H 0.067 0.933 41 H 0.111 0.889 42 H 0.098 0.902 43 H 0.094 0.906 44 H 0.066 0.934 45 H 0.088 0.912 46 H 0.107 0.893 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -4.381 -1.397 -18.591 19.151 hybrid contribution 0.822 -0.169 0.417 0.937 sum -3.559 -1.566 -18.174 18.585 Atomic orbital electron populations 1.22502 0.99684 1.01381 1.00544 1.21895 0.90118 0.98144 0.91946 0.91490 1.19185 0.96313 0.95485 0.89691 1.21177 0.91592 1.28925 1.10732 0.92316 1.24986 0.97902 0.95952 0.96008 1.69972 1.34979 1.33422 1.16152 0.86604 0.86645 0.77540 0.77591 1.19870 1.21404 1.21371 1.62278 1.57571 1.02202 1.01314 1.22134 0.98363 0.96610 0.90299 1.22240 0.97398 0.90035 0.97763 1.62454 1.57226 1.03447 1.02310 1.21709 0.92664 0.97370 0.90608 1.22915 0.98464 1.02913 0.98868 1.22513 1.00976 0.92258 0.85342 1.87925 1.24134 1.69171 1.49170 1.22569 0.82004 0.99389 0.97514 1.22327 1.02176 0.99993 0.94364 1.22207 1.00067 0.95786 0.89101 1.22131 0.95715 0.91588 0.97451 0.92760 0.92695 0.94163 0.96019 0.96724 0.93423 0.94981 0.91057 0.93701 0.90853 0.90233 0.90496 0.90302 0.93315 0.88997 0.93282 0.88892 0.90223 0.90613 0.93402 0.91200 0.89262 0.94865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.17 8.39 37.16 0.31 -2.86 16 2 C 0.09 1.77 2.26 -67.71 -0.15 1.62 16 3 H 0.07 1.39 7.98 -51.93 -0.41 0.98 16 4 C 0.03 0.77 4.39 -27.88 -0.12 0.64 16 5 C -0.49 -13.57 8.80 -34.44 -0.30 -13.87 16 6 H 0.06 1.65 7.75 -52.49 -0.41 1.25 16 7 C 0.05 1.45 5.46 -17.82 -0.10 1.36 16 8 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 9 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 10 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 N -0.51 -9.70 4.32 -226.49 -0.98 -10.68 16 14 C 0.05 0.87 5.36 -3.77 -0.02 0.85 16 15 C 0.05 0.76 4.84 -3.77 -0.02 0.74 16 16 N -0.53 -7.23 4.74 -226.27 -1.07 -8.30 16 17 C 0.09 0.97 2.39 -67.53 -0.16 0.81 16 18 C -0.19 -2.22 4.70 -26.59 -0.13 -2.35 16 19 C 0.07 0.68 6.84 37.21 0.25 0.93 16 20 O -0.39 -4.41 10.77 -35.23 -0.38 -4.79 16 21 C 0.06 0.57 6.84 37.20 0.25 0.82 16 22 C -0.15 -1.49 5.17 -26.60 -0.14 -1.63 16 23 C 0.06 0.86 5.14 -3.76 -0.02 0.84 16 24 C 0.06 1.06 4.70 -3.77 -0.02 1.04 16 25 H 0.05 0.95 6.39 -51.93 -0.33 0.61 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.04 0.63 6.84 -51.93 -0.36 0.28 16 28 H 0.02 0.58 6.43 -51.93 -0.33 0.25 16 29 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.03 0.50 6.84 -51.93 -0.36 0.15 16 32 H 0.07 1.11 8.05 -51.93 -0.42 0.70 16 33 H 0.04 0.70 6.50 -51.93 -0.34 0.36 16 34 H 0.07 0.91 6.00 -51.93 -0.31 0.60 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 1.01 6.42 -51.93 -0.33 0.67 16 37 H 0.08 0.95 6.67 -51.93 -0.35 0.60 16 38 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.08 0.81 6.11 -51.93 -0.32 0.49 16 44 H 0.05 0.80 6.57 -51.93 -0.34 0.46 16 45 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.09 1.81 6.36 -51.93 -0.33 1.48 16 47 H 0.03 0.57 6.40 -51.93 -0.33 0.24 16 LS Contribution 342.17 15.07 5.16 5.16 Total: -1.00 -30.10 342.17 -10.12 -40.22 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -8.21 Total: -1.17 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -0.35 Total: -11.06 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: -1.31 Total: -45.43 kcal Atomic # 8 Polarization: -4.41 SS G_CDS: -0.38 Total: -4.79 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.10 -10.12 -40.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351412096.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.607 kcal (2) G-P(sol) polarization free energy of solvation -30.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds