Wall clock time and date at job start Tue Mar 31 2020 05:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46742 * 2 1 4 4 C 1.50697 * 109.46875 * 119.99735 * 2 1 3 5 5 O 1.21291 * 119.99800 * 239.99820 * 4 2 1 6 6 N 1.34779 * 120.00225 * 60.00531 * 4 2 1 7 7 C 1.47610 * 118.74428 * 0.02562 * 6 4 2 8 8 C 1.53798 * 111.29947 * 138.29749 * 7 6 4 9 9 C 1.51275 * 109.63143 * 319.95845 * 8 7 6 10 10 N 1.46200 * 109.09967 * 92.40929 * 9 8 7 11 11 C 1.46902 * 110.99998 * 144.76999 * 10 9 8 12 12 H 1.08995 * 109.47343 * 322.74986 * 11 10 9 13 13 C 1.52999 * 109.47018 * 202.74801 * 11 10 9 14 14 C 1.53005 * 109.46797 * 82.74732 * 11 10 9 15 15 C 1.50691 * 109.47187 * 293.77083 * 14 11 10 16 16 H 1.07997 * 120.00343 * 354.57835 * 15 14 11 17 17 C 1.37880 * 119.99857 * 174.58581 * 15 14 11 18 18 N 1.31513 * 119.99996 * 359.97438 * 17 15 14 19 19 Si 1.86809 * 119.99963 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46998 * 59.99880 * 19 17 15 21 21 H 1.48494 * 109.47029 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46912 * 299.99763 * 19 17 15 23 23 C 1.41446 * 116.34466 * 272.97217 * 10 9 8 24 24 C 1.44882 * 118.74577 * 180.02562 * 6 4 2 25 25 H 1.08989 * 109.47425 * 300.00169 * 1 2 3 26 26 H 1.08999 * 109.46796 * 60.00569 * 1 2 3 27 27 H 1.08999 * 109.46839 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47365 * 240.00252 * 2 1 3 29 29 H 1.09008 * 109.46646 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47010 * 299.99299 * 3 2 1 31 31 H 1.08996 * 109.47439 * 60.00114 * 3 2 1 32 32 H 1.09001 * 109.11072 * 258.76788 * 7 6 4 33 33 H 1.08998 * 109.11550 * 17.82818 * 7 6 4 34 34 H 1.09004 * 109.44320 * 80.00665 * 8 7 6 35 35 H 1.08999 * 109.44587 * 199.94001 * 8 7 6 36 36 H 1.08998 * 109.53024 * 332.52494 * 9 8 7 37 37 H 1.08992 * 109.53479 * 212.29641 * 9 8 7 38 38 H 1.08994 * 109.47131 * 64.34840 * 13 11 10 39 39 H 1.08997 * 109.46775 * 184.34580 * 13 11 10 40 40 H 1.09003 * 109.47205 * 304.34761 * 13 11 10 41 41 H 1.09002 * 109.47059 * 53.77063 * 14 11 10 42 42 H 1.08999 * 109.46731 * 173.76794 * 14 11 10 43 43 H 0.97002 * 119.99802 * 180.02562 * 18 17 15 44 44 H 1.09002 * 109.38419 * 183.63700 * 23 10 9 45 45 H 1.09001 * 109.38561 * 303.43368 * 23 10 9 46 46 H 1.08995 * 109.43249 * 149.68433 * 24 6 4 47 47 H 1.09000 * 109.40411 * 29.78856 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.7296 -0.1208 2.0288 6 7 1.7068 -2.0007 1.4438 7 6 0.8572 -2.6915 0.4539 8 6 1.3573 -4.1217 0.1897 9 6 2.8692 -4.1301 0.1382 10 7 3.3916 -4.4253 1.4714 11 6 4.6160 -5.2330 1.3900 12 1 4.5259 -5.9480 0.5723 13 6 4.8183 -5.9863 2.7062 14 6 5.8152 -4.3172 1.1369 15 6 5.6902 -3.6917 -0.2284 16 1 4.8884 -3.9898 -0.8876 17 6 6.5995 -2.7387 -0.6359 18 7 7.5756 -2.3753 0.1670 19 14 6.4450 -1.9638 -2.3287 20 1 5.1324 -1.2786 -2.4414 21 1 7.5367 -0.9760 -2.5224 22 1 6.5427 -3.0204 -3.3675 23 6 3.5705 -3.3192 2.3346 24 6 2.2041 -2.6569 2.6360 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 -0.1652 -2.7345 0.8292 33 1 0.8699 -2.1306 -0.4806 34 1 1.0179 -4.7785 0.9906 35 1 0.9604 -4.4749 -0.7620 36 1 3.2282 -3.1532 -0.1858 37 1 3.2058 -4.8940 -0.5625 38 1 4.0024 -6.6949 2.8485 39 1 5.7656 -6.5246 2.6748 40 1 4.8312 -5.2762 3.5331 41 1 5.8404 -3.5339 1.8945 42 1 6.7346 -4.9005 1.1865 43 1 8.2151 -1.7047 -0.1196 44 1 4.0220 -3.6574 3.2672 45 1 4.2267 -2.5908 1.8581 46 1 1.4933 -3.4198 2.9532 47 1 2.3249 -1.9208 3.4308 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351492080.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:22 Heat of formation + Delta-G solvation = -29.764327 kcal Electronic energy + Delta-G solvation = -24906.954995 eV Core-core repulsion = 21703.830201 eV Total energy + Delta-G solvation = -3203.124793 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.31470 -38.28385 -35.61289 -34.47815 -32.68781 -32.28237 -30.82974 -27.60119 -27.38652 -27.08742 -25.36751 -23.74820 -22.95539 -21.28916 -20.59179 -19.05830 -18.23463 -16.94083 -16.24228 -16.02725 -15.53675 -15.00968 -14.68871 -14.47299 -14.29514 -13.98157 -13.36051 -13.01357 -12.76204 -12.67693 -12.54088 -12.21388 -12.08585 -11.85239 -11.67640 -11.58838 -11.36815 -11.25051 -11.04005 -11.00065 -10.94447 -10.85415 -10.67572 -10.55886 -10.28773 -10.05128 -9.86811 -9.47742 -9.26947 -8.95654 -8.36307 -8.25433 -7.15050 -5.99416 -4.00996 2.99235 3.28864 3.34519 3.34663 3.35430 4.43908 4.59387 4.70302 4.93195 5.03800 5.07247 5.22914 5.37119 5.37740 5.42599 5.62140 5.68663 5.70934 5.76368 5.86541 5.88271 5.92264 5.96098 6.04713 6.06217 6.14865 6.21003 6.22169 6.28140 6.37865 6.40076 6.49418 6.70345 6.78518 6.81643 6.86939 6.98250 7.16255 7.55378 7.65793 7.69114 7.97154 8.14431 8.29327 8.40664 8.55996 9.03942 9.62026 11.11878 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012639 B = 0.008429 C = 0.006198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.847026 B = 3320.889467 C = 4516.485798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.131 4.131 4 C 0.514 3.486 5 O -0.538 6.538 6 N -0.602 5.602 7 C 0.108 3.892 8 C -0.136 4.136 9 C 0.080 3.920 10 N -0.547 5.547 11 C 0.087 3.913 12 H 0.064 0.936 13 C -0.138 4.138 14 C -0.006 4.006 15 C -0.521 4.521 16 H 0.059 0.941 17 C 0.061 3.939 18 N -0.891 5.891 19 Si 0.883 3.117 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.059 3.941 24 C 0.119 3.881 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.096 0.904 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.045 0.955 39 H 0.049 0.951 40 H 0.048 0.952 41 H 0.027 0.973 42 H 0.012 0.988 43 H 0.260 0.740 44 H 0.072 0.928 45 H 0.054 0.946 46 H 0.073 0.927 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.841 -0.354 0.186 15.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.139 4.139 3 C -0.188 4.188 4 C 0.302 3.698 5 O -0.414 6.414 6 N -0.335 5.335 7 C -0.015 4.015 8 C -0.175 4.175 9 C -0.048 4.048 10 N -0.271 5.271 11 C -0.021 4.021 12 H 0.082 0.918 13 C -0.196 4.196 14 C -0.044 4.044 15 C -0.559 4.559 16 H 0.077 0.923 17 C -0.141 4.141 18 N -0.530 5.530 19 Si 0.711 3.289 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.071 4.071 24 C -0.005 4.005 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.114 0.886 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.045 0.955 42 H 0.030 0.970 43 H 0.070 0.930 44 H 0.090 0.910 45 H 0.072 0.928 46 H 0.092 0.908 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.649 -0.178 0.849 15.673 hybrid contribution 0.723 0.891 -1.432 1.835 sum -14.925 0.713 -0.583 14.954 Atomic orbital electron populations 1.22081 0.93351 1.03201 1.02497 1.21291 0.97202 0.98077 0.97351 1.21583 1.02193 0.93564 1.01483 1.20650 0.79831 0.81799 0.87506 1.90682 1.37389 1.66196 1.47154 1.47754 1.51259 1.10945 1.23497 1.22199 0.92841 0.94483 0.91966 1.22031 0.98228 0.95331 1.01938 1.21498 0.91778 1.01523 0.90003 1.58735 1.31747 1.23528 1.13096 1.21791 0.89737 0.94763 0.95775 0.91823 1.21843 1.00027 0.99510 0.98211 1.19750 0.92625 0.94772 0.97261 1.21282 1.12173 1.21899 1.00552 0.92332 1.24980 0.95441 0.96819 0.96814 1.69944 1.15409 1.31649 1.35952 0.86801 0.77713 0.79219 0.85168 1.20341 1.21296 1.20303 1.21607 0.95393 0.93091 0.97057 1.21620 0.96037 0.96178 0.86627 0.92339 0.91773 0.91070 0.88608 0.91790 0.92430 0.92168 0.92187 0.90033 0.90646 0.91111 0.92734 0.91578 0.93635 0.93146 0.93306 0.95498 0.96992 0.93037 0.90959 0.92777 0.90844 0.90297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 8.71 37.16 0.32 -1.25 16 2 C -0.12 -1.65 2.43 -91.77 -0.22 -1.87 16 3 C -0.13 -1.83 8.48 37.16 0.32 -1.51 16 4 C 0.51 9.04 7.04 -10.99 -0.08 8.96 16 5 O -0.54 -11.60 15.41 5.55 0.09 -11.52 16 6 N -0.60 -9.44 2.18 -172.43 -0.38 -9.82 16 7 C 0.11 1.32 4.46 -3.02 -0.01 1.30 16 8 C -0.14 -1.78 5.78 -27.19 -0.16 -1.94 16 9 C 0.08 1.41 3.46 -5.07 -0.02 1.40 16 10 N -0.55 -10.11 3.72 -231.45 -0.86 -10.97 16 11 C 0.09 1.75 2.48 -67.71 -0.17 1.59 16 12 H 0.06 1.30 7.41 -51.93 -0.38 0.92 16 13 C -0.14 -2.40 9.30 37.16 0.35 -2.05 16 14 C -0.01 -0.15 3.96 -27.88 -0.11 -0.26 16 15 C -0.52 -14.18 7.52 -34.44 -0.26 -14.44 16 16 H 0.06 1.52 5.11 -52.49 -0.27 1.26 16 17 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 18 N -0.89 -27.09 13.29 55.43 0.74 -26.36 16 19 Si 0.88 21.76 29.54 -169.99 -5.02 16.74 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 C 0.06 1.14 4.14 -5.72 -0.02 1.11 16 24 C 0.12 1.94 5.52 -3.95 -0.02 1.92 16 25 H 0.06 0.61 8.14 -51.94 -0.42 0.19 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.65 4.61 -51.93 -0.24 0.41 16 28 H 0.10 1.34 7.41 -51.93 -0.38 0.96 16 29 H 0.06 1.05 8.10 -51.92 -0.42 0.63 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.84 8.10 -51.93 -0.42 0.42 16 32 H 0.06 0.60 7.55 -51.93 -0.39 0.21 16 33 H 0.08 0.92 4.95 -51.93 -0.26 0.66 16 34 H 0.07 0.98 7.98 -51.93 -0.41 0.56 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.05 1.15 6.24 -51.93 -0.32 0.82 16 37 H 0.07 1.21 6.51 -51.93 -0.34 0.87 16 38 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.05 0.84 6.40 -51.93 -0.33 0.51 16 41 H 0.03 0.75 6.21 -51.93 -0.32 0.42 16 42 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.07 1.37 6.15 -51.93 -0.32 1.05 16 45 H 0.05 1.34 6.53 -51.93 -0.34 1.00 16 46 H 0.07 1.05 8.11 -51.93 -0.42 0.63 16 47 H 0.08 1.35 7.28 -51.93 -0.38 0.97 16 LS Contribution 344.13 15.07 5.19 5.19 Total: -1.00 -31.88 344.13 -8.48 -40.36 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -8.05 Total: 1.77 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -0.18 Total: -5.40 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: -0.50 Total: -47.15 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.09 Total: -11.52 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.88 -8.48 -40.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351492080.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.599 kcal (2) G-P(sol) polarization free energy of solvation -31.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds